Wall clock time and date at job start Tue Mar 31 2020 05:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47162 * 2 1 4 4 C 1.52996 * 109.46919 * 120.00380 * 2 1 3 5 5 H 1.09005 * 108.76763 * 305.04963 * 4 2 1 6 6 C 1.50474 * 108.87904 * 63.56248 * 4 2 1 7 7 C 1.54243 * 108.52393 * 214.92673 * 6 4 2 8 8 C 1.45536 * 112.40655 * 280.01597 * 7 6 4 9 9 C 1.54243 * 112.40924 * 61.93451 * 8 7 6 10 10 H 1.08996 * 109.62884 * 39.91788 * 9 8 7 11 11 N 1.46502 * 109.62769 * 160.30259 * 9 8 7 12 12 C 1.34778 * 120.00146 * 274.99781 * 11 9 8 13 13 O 1.21592 * 119.99710 * 0.02562 * 12 11 9 14 14 N 1.34770 * 120.00013 * 180.02562 * 12 11 9 15 15 C 1.46508 * 119.99813 * 180.02562 * 14 12 11 16 16 C 1.50694 * 109.46949 * 180.02562 * 15 14 12 17 17 H 1.08000 * 120.00326 * 359.97438 * 16 15 14 18 18 C 1.37880 * 120.00109 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99799 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00174 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46974 * 90.00162 * 20 18 16 22 22 H 1.48500 * 109.47154 * 330.00171 * 20 18 16 23 23 H 1.48502 * 109.46985 * 209.99845 * 20 18 16 24 24 C 1.50469 * 108.52069 * 280.01270 * 9 8 7 25 25 C 1.54065 * 112.49938 * 94.14909 * 24 9 8 26 26 H 1.09005 * 109.47053 * 54.12019 * 1 2 3 27 27 H 1.08997 * 109.47532 * 174.12078 * 1 2 3 28 28 H 1.08993 * 109.47380 * 294.12370 * 1 2 3 29 29 H 1.09005 * 109.47011 * 240.00071 * 2 1 3 30 30 H 1.09000 * 109.47117 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47282 * 300.00148 * 3 2 1 32 32 H 1.09005 * 109.47100 * 60.00125 * 3 2 1 33 33 H 1.08997 * 109.62542 * 95.22041 * 6 4 2 34 34 H 1.08997 * 109.62448 * 334.63682 * 6 4 2 35 35 H 1.09001 * 108.89547 * 159.25823 * 7 6 4 36 36 H 1.09001 * 108.81479 * 40.71424 * 7 6 4 37 37 H 1.09001 * 108.89375 * 301.18112 * 8 7 6 38 38 H 1.08998 * 108.81809 * 182.63813 * 8 7 6 39 39 H 0.97000 * 119.99786 * 95.00631 * 11 9 8 40 40 H 0.96994 * 120.00649 * 0.02562 * 14 12 11 41 41 H 1.08998 * 109.46974 * 60.00204 * 15 14 12 42 42 H 1.09004 * 109.46597 * 299.99670 * 15 14 12 43 43 H 0.97003 * 119.99542 * 0.02562 * 19 18 16 44 44 H 1.09000 * 108.87848 * 214.92453 * 24 9 8 45 45 H 1.09003 * 108.87430 * 333.37211 * 24 9 8 46 46 H 1.09000 * 108.81249 * 197.42346 * 25 24 9 47 47 H 1.09005 * 108.72526 * 79.08528 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.5980 -0.2537 2.1291 6 6 1.6046 -2.1606 1.1922 7 6 1.2969 -2.6367 2.6266 8 6 2.5014 -2.9826 3.3666 9 6 3.4490 -1.7785 3.5436 10 1 2.8663 -0.8818 3.7542 11 7 4.3719 -2.0372 4.6516 12 6 3.9990 -1.7625 5.9173 13 8 2.8965 -1.3004 6.1396 14 7 4.8482 -2.0000 6.9366 15 6 4.4426 -1.7019 8.3125 16 6 5.5645 -2.0552 9.2545 17 1 6.4872 -2.4615 8.8672 18 6 5.4127 -1.8606 10.6111 19 7 4.2890 -1.3663 11.0828 20 14 6.8032 -2.2991 11.7789 21 1 7.6876 -1.1201 11.9604 22 1 7.5889 -3.4248 11.2125 23 1 6.2384 -2.7010 13.0922 24 6 4.2281 -1.5922 2.2699 25 6 3.5716 -0.5712 1.3212 26 1 -0.3633 0.6023 -0.8327 27 1 -0.3634 -1.0222 -0.1053 28 1 -0.3634 0.4200 0.9378 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 2.4039 -2.7683 0.7682 34 1 0.7088 -2.2480 0.5773 35 1 0.6495 -3.5122 2.5768 36 1 0.7735 -1.8408 3.1565 37 1 3.0297 -3.7719 2.8319 38 1 2.2151 -3.3540 4.3506 39 1 5.2513 -2.4061 4.4743 40 1 5.7278 -2.3683 6.7593 41 1 3.5579 -2.2863 8.5652 42 1 4.2144 -0.6398 8.4019 43 1 3.5669 -1.1389 10.4763 44 1 5.2323 -1.2483 2.5178 45 1 4.3023 -2.5519 1.7583 46 1 3.9852 -0.7038 0.3214 47 1 3.8103 0.4338 1.6693 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426450620.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:34 Heat of formation + Delta-G solvation = -73.528301 kcal Electronic energy + Delta-G solvation = -22927.951807 eV Core-core repulsion = 19722.929265 eV Total energy + Delta-G solvation = -3205.022541 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.14900 -38.78885 -36.12477 -34.29737 -33.55572 -32.41163 -31.95856 -29.68499 -27.64498 -26.50620 -24.59599 -24.28239 -22.55966 -21.02776 -20.65686 -20.13996 -19.26169 -18.04390 -16.67162 -16.20877 -15.30444 -15.19737 -14.85084 -14.60354 -14.22554 -14.04242 -13.81778 -13.70631 -13.34898 -13.16041 -13.07190 -12.48946 -12.30703 -12.14448 -12.02254 -11.97655 -11.85537 -11.56446 -11.18068 -11.07591 -10.97316 -10.86151 -10.73970 -10.57142 -10.30439 -10.29987 -10.16229 -10.10835 -9.46144 -8.75841 -8.74267 -8.59496 -7.84120 -6.48533 -4.21262 3.34965 3.40144 3.42742 3.58361 3.90778 4.38883 4.45887 4.52436 4.55422 4.77436 4.89093 4.97323 5.11394 5.14209 5.16130 5.21684 5.26286 5.30574 5.39587 5.43981 5.51065 5.51442 5.64412 5.67842 5.72670 5.78491 5.88202 5.95100 5.98518 6.06105 6.09440 6.13035 6.14693 6.23844 6.36153 6.40709 6.42858 6.95236 6.96585 7.30581 7.41114 7.53179 7.92529 8.33036 8.67287 8.88215 9.33225 9.53739 10.91886 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035038 B = 0.002896 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.948991 B = 9665.644536 C = 9673.294588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.092 4.092 3 C -0.151 4.151 4 C -0.086 4.086 5 H 0.072 0.928 6 C -0.117 4.117 7 C -0.114 4.114 8 C -0.127 4.127 9 C 0.169 3.831 10 H 0.087 0.913 11 N -0.753 5.753 12 C 0.693 3.307 13 O -0.602 6.602 14 N -0.727 5.727 15 C 0.258 3.742 16 C -0.621 4.621 17 H 0.056 0.944 18 C 0.022 3.978 19 N -0.903 5.903 20 Si 1.079 2.921 21 H -0.286 1.286 22 H -0.288 1.288 23 H -0.282 1.282 24 C -0.127 4.127 25 C -0.105 4.105 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.056 0.944 38 H 0.065 0.935 39 H 0.390 0.610 40 H 0.388 0.612 41 H 0.014 0.986 42 H 0.014 0.986 43 H 0.273 0.727 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.062 0.938 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.231 -0.503 -24.780 24.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.111 4.111 3 C -0.208 4.208 4 C -0.104 4.104 5 H 0.091 0.909 6 C -0.154 4.154 7 C -0.152 4.152 8 C -0.166 4.166 9 C 0.064 3.936 10 H 0.105 0.895 11 N -0.409 5.409 12 C 0.393 3.607 13 O -0.481 6.481 14 N -0.379 5.379 15 C 0.136 3.864 16 C -0.660 4.660 17 H 0.075 0.925 18 C -0.184 4.184 19 N -0.538 5.538 20 Si 0.906 3.094 21 H -0.213 1.213 22 H -0.214 1.214 23 H -0.208 1.208 24 C -0.165 4.165 25 C -0.143 4.143 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.223 0.777 40 H 0.220 0.780 41 H 0.032 0.968 42 H 0.032 0.968 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.080 0.920 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.834 -0.071 -22.904 23.079 hybrid contribution 0.414 -0.364 -1.777 1.860 sum -2.420 -0.435 -24.681 24.803 Atomic orbital electron populations 1.21924 0.95396 1.01655 1.01745 1.21227 0.95628 0.96111 0.98114 1.21917 1.01230 0.96102 1.01573 1.21097 0.95236 0.95983 0.98099 0.90944 1.21527 1.01206 0.95739 0.96913 1.20409 0.97875 1.01518 0.95413 1.20876 0.96681 0.98107 1.00961 1.20381 0.90268 0.98414 0.84576 0.89463 1.45337 1.18924 1.71343 1.05256 1.16182 0.84812 0.79248 0.80500 1.90857 1.21454 1.52005 1.83816 1.45518 1.17320 1.67690 1.07322 1.19014 0.96162 0.95568 0.75652 1.22095 1.01445 1.48582 0.93851 0.92541 1.25874 1.01424 0.94164 0.96946 1.70721 1.04810 1.39008 1.39285 0.83407 0.74125 0.76268 0.75557 1.21299 1.21417 1.20798 1.21666 0.99406 1.00157 0.95267 1.21918 0.94687 0.98910 0.98793 0.93012 0.92408 0.92560 0.91485 0.92400 0.93120 0.92622 0.91843 0.91457 0.92382 0.91793 0.92556 0.91604 0.77747 0.77988 0.96832 0.96839 0.91624 0.91493 0.91618 0.91976 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 8.86 37.16 0.33 -0.80 16 2 C -0.09 -0.72 2.35 -90.62 -0.21 -0.93 16 3 C -0.15 -1.16 8.71 37.16 0.32 -0.84 16 4 C -0.09 -0.77 1.31 -91.33 -0.12 -0.89 16 5 H 0.07 0.78 6.63 -51.93 -0.34 0.44 16 6 C -0.12 -1.02 4.98 -27.34 -0.14 -1.16 16 7 C -0.11 -1.25 5.27 -29.60 -0.16 -1.40 16 8 C -0.13 -1.61 4.89 -29.60 -0.14 -1.76 16 9 C 0.17 2.25 2.11 -68.54 -0.14 2.11 16 10 H 0.09 1.39 6.45 -51.93 -0.34 1.05 16 11 N -0.75 -11.53 5.00 -59.28 -0.30 -11.83 16 12 C 0.69 14.63 8.44 -86.92 -0.73 13.89 16 13 O -0.60 -15.19 16.02 5.29 0.08 -15.11 16 14 N -0.73 -16.06 5.55 -66.41 -0.37 -16.43 16 15 C 0.26 7.03 4.74 -5.19 -0.02 7.01 16 16 C -0.62 -17.43 9.28 -34.44 -0.32 -17.75 16 17 H 0.06 1.50 7.60 -52.49 -0.40 1.10 16 18 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 19 N -0.90 -27.79 13.65 55.43 0.76 -27.03 16 20 Si 1.08 24.78 29.90 -169.99 -5.08 19.70 16 21 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 C -0.13 -1.24 4.93 -27.44 -0.14 -1.38 16 25 C -0.11 -0.93 4.08 -25.62 -0.10 -1.03 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.41 6.34 -51.93 -0.33 0.08 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.43 6.66 -51.93 -0.35 0.08 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.53 6.98 -51.93 -0.36 0.17 16 34 H 0.07 0.54 5.73 -51.93 -0.30 0.24 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.79 7.46 -51.93 -0.39 0.40 16 37 H 0.06 0.63 7.47 -51.93 -0.39 0.24 16 38 H 0.07 1.04 8.01 -51.93 -0.42 0.63 16 39 H 0.39 4.82 8.51 -40.82 -0.35 4.47 16 40 H 0.39 7.43 8.33 -40.82 -0.34 7.09 16 41 H 0.01 0.41 8.01 -51.93 -0.42 -0.01 16 42 H 0.01 0.41 8.01 -51.93 -0.42 -0.01 16 43 H 0.27 8.53 7.22 -40.82 -0.29 8.24 16 44 H 0.07 0.64 7.85 -51.93 -0.41 0.23 16 45 H 0.07 0.58 6.63 -51.93 -0.34 0.23 16 46 H 0.06 0.47 7.98 -51.93 -0.41 0.06 16 47 H 0.06 0.58 7.33 -51.93 -0.38 0.20 16 LS Contribution 354.89 15.07 5.35 5.35 Total: -1.00 -32.92 354.89 -9.53 -42.45 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -8.30 Total: 7.31 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -1.68 Total: -4.40 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: 0.09 Total: -55.29 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: 0.08 Total: -15.11 kcal Atomic # 14 Polarization: 24.78 SS G_CDS: -5.08 Total: 19.70 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.92 -9.53 -42.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426450620.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.076 kcal (2) G-P(sol) polarization free energy of solvation -32.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds