Wall clock time and date at job start Tue Mar 31 2020 05:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47162 * 2 1 4 4 C 1.52996 * 109.46919 * 120.00380 * 2 1 3 5 5 H 1.09005 * 108.76763 * 305.04963 * 4 2 1 6 6 C 1.50474 * 108.87904 * 63.56248 * 4 2 1 7 7 C 1.54243 * 108.52393 * 214.92673 * 6 4 2 8 8 C 1.45536 * 112.40655 * 280.01597 * 7 6 4 9 9 C 1.54243 * 112.40924 * 61.93451 * 8 7 6 10 10 H 1.08996 * 109.62884 * 39.91788 * 9 8 7 11 11 N 1.46502 * 109.62769 * 160.30259 * 9 8 7 12 12 C 1.34778 * 120.00146 * 274.99781 * 11 9 8 13 13 O 1.21592 * 119.99710 * 0.02562 * 12 11 9 14 14 N 1.34770 * 120.00013 * 180.02562 * 12 11 9 15 15 C 1.46508 * 119.99813 * 180.02562 * 14 12 11 16 16 C 1.50694 * 109.46949 * 180.02562 * 15 14 12 17 17 H 1.08000 * 120.00326 * 359.97438 * 16 15 14 18 18 C 1.37880 * 120.00109 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99799 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00174 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46974 * 90.00162 * 20 18 16 22 22 H 1.48500 * 109.47154 * 330.00171 * 20 18 16 23 23 H 1.48502 * 109.46985 * 209.99845 * 20 18 16 24 24 C 1.50469 * 108.52069 * 280.01270 * 9 8 7 25 25 C 1.54065 * 112.49938 * 94.14909 * 24 9 8 26 26 H 1.09005 * 109.47053 * 54.12019 * 1 2 3 27 27 H 1.08997 * 109.47532 * 174.12078 * 1 2 3 28 28 H 1.08993 * 109.47380 * 294.12370 * 1 2 3 29 29 H 1.09005 * 109.47011 * 240.00071 * 2 1 3 30 30 H 1.09000 * 109.47117 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47282 * 300.00148 * 3 2 1 32 32 H 1.09005 * 109.47100 * 60.00125 * 3 2 1 33 33 H 1.08997 * 109.62542 * 95.22041 * 6 4 2 34 34 H 1.08997 * 109.62448 * 334.63682 * 6 4 2 35 35 H 1.09001 * 108.89547 * 159.25823 * 7 6 4 36 36 H 1.09001 * 108.81479 * 40.71424 * 7 6 4 37 37 H 1.09001 * 108.89375 * 301.18112 * 8 7 6 38 38 H 1.08998 * 108.81809 * 182.63813 * 8 7 6 39 39 H 0.97000 * 119.99786 * 95.00631 * 11 9 8 40 40 H 0.96994 * 120.00649 * 0.02562 * 14 12 11 41 41 H 1.08998 * 109.46974 * 60.00204 * 15 14 12 42 42 H 1.09004 * 109.46597 * 299.99670 * 15 14 12 43 43 H 0.97003 * 119.99542 * 0.02562 * 19 18 16 44 44 H 1.09000 * 108.87848 * 214.92453 * 24 9 8 45 45 H 1.09003 * 108.87430 * 333.37211 * 24 9 8 46 46 H 1.09000 * 108.81249 * 197.42346 * 25 24 9 47 47 H 1.09005 * 108.72526 * 79.08528 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.5980 -0.2537 2.1291 6 6 1.6046 -2.1606 1.1922 7 6 1.2969 -2.6367 2.6266 8 6 2.5014 -2.9826 3.3666 9 6 3.4490 -1.7785 3.5436 10 1 2.8663 -0.8818 3.7542 11 7 4.3719 -2.0372 4.6516 12 6 3.9990 -1.7625 5.9173 13 8 2.8965 -1.3004 6.1396 14 7 4.8482 -2.0000 6.9366 15 6 4.4426 -1.7019 8.3125 16 6 5.5645 -2.0552 9.2545 17 1 6.4872 -2.4615 8.8672 18 6 5.4127 -1.8606 10.6111 19 7 4.2890 -1.3663 11.0828 20 14 6.8032 -2.2991 11.7789 21 1 7.6876 -1.1201 11.9604 22 1 7.5889 -3.4248 11.2125 23 1 6.2384 -2.7010 13.0922 24 6 4.2281 -1.5922 2.2699 25 6 3.5716 -0.5712 1.3212 26 1 -0.3633 0.6023 -0.8327 27 1 -0.3634 -1.0222 -0.1053 28 1 -0.3634 0.4200 0.9378 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 2.4039 -2.7683 0.7682 34 1 0.7088 -2.2480 0.5773 35 1 0.6495 -3.5122 2.5768 36 1 0.7735 -1.8408 3.1565 37 1 3.0297 -3.7719 2.8319 38 1 2.2151 -3.3540 4.3506 39 1 5.2513 -2.4061 4.4743 40 1 5.7278 -2.3683 6.7593 41 1 3.5579 -2.2863 8.5652 42 1 4.2144 -0.6398 8.4019 43 1 3.5669 -1.1389 10.4763 44 1 5.2323 -1.2483 2.5178 45 1 4.3023 -2.5519 1.7583 46 1 3.9852 -0.7038 0.3214 47 1 3.8103 0.4338 1.6693 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426450620.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:33 Heat of formation + Delta-G solvation = -95.286985 kcal Electronic energy + Delta-G solvation = -22928.895334 eV Core-core repulsion = 19722.929265 eV Total energy + Delta-G solvation = -3205.966069 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.40029 -40.09798 -37.21065 -36.29555 -34.87721 -34.25209 -32.93768 -30.74150 -28.67787 -28.14152 -25.51235 -25.40185 -24.50445 -21.98189 -21.87366 -21.42412 -20.18086 -19.82312 -18.51453 -17.51651 -16.55142 -16.47187 -15.92848 -15.75813 -15.58139 -15.29869 -15.16465 -15.02813 -14.65631 -14.37312 -14.24078 -14.07120 -13.83732 -13.15686 -13.11580 -12.95468 -12.82283 -12.68622 -12.56328 -12.22175 -12.05851 -12.01078 -11.88980 -11.67436 -11.45019 -11.31220 -11.09099 -11.02137 -10.92440 -10.87826 -10.77414 -10.28808 -9.68668 -8.80675 -6.55632 1.55214 1.65280 1.80507 1.84567 2.15927 2.55408 3.08001 3.42723 3.59105 3.69299 3.84913 4.04292 4.06294 4.21342 4.33894 4.37107 4.41057 4.43781 4.59564 4.66958 4.72233 4.80720 4.81265 4.88551 4.96666 4.97733 5.01661 5.05613 5.07307 5.15140 5.21356 5.26833 5.33216 5.34957 5.36732 5.39992 5.46551 5.47061 5.51551 5.61416 5.64637 5.70540 6.05863 6.16702 6.36453 7.17580 7.32382 7.64590 8.58871 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035038 B = 0.002896 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.948991 B = 9665.644536 C = 9673.294588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.088 4.088 3 C -0.151 4.151 4 C -0.085 4.085 5 H 0.043 0.957 6 C -0.107 4.107 7 C -0.114 4.114 8 C -0.121 4.121 9 C 0.166 3.834 10 H 0.055 0.945 11 N -0.727 5.727 12 C 0.690 3.310 13 O -0.649 6.649 14 N -0.721 5.721 15 C 0.273 3.727 16 C -0.628 4.628 17 H 0.076 0.924 18 C -0.034 4.034 19 N -0.930 5.930 20 Si 1.134 2.866 21 H -0.270 1.270 22 H -0.260 1.260 23 H -0.285 1.285 24 C -0.120 4.120 25 C -0.103 4.103 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.040 0.960 29 H 0.083 0.917 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.039 0.961 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.037 0.963 37 H 0.083 0.917 38 H 0.025 0.975 39 H 0.410 0.590 40 H 0.405 0.595 41 H -0.021 1.021 42 H -0.021 1.021 43 H 0.254 0.746 44 H 0.075 0.925 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.205 -1.815 -27.299 27.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.106 4.106 3 C -0.209 4.209 4 C -0.104 4.104 5 H 0.061 0.939 6 C -0.144 4.144 7 C -0.152 4.152 8 C -0.159 4.159 9 C 0.061 3.939 10 H 0.073 0.927 11 N -0.384 5.384 12 C 0.390 3.610 13 O -0.532 6.532 14 N -0.375 5.375 15 C 0.149 3.851 16 C -0.665 4.665 17 H 0.094 0.906 18 C -0.232 4.232 19 N -0.566 5.566 20 Si 0.953 3.047 21 H -0.195 1.195 22 H -0.184 1.184 23 H -0.210 1.210 24 C -0.158 4.158 25 C -0.141 4.141 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.059 0.941 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.056 0.944 37 H 0.101 0.899 38 H 0.044 0.956 39 H 0.246 0.754 40 H 0.241 0.759 41 H -0.003 1.003 42 H -0.003 1.003 43 H 0.063 0.937 44 H 0.094 0.906 45 H 0.108 0.892 46 H 0.105 0.895 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.359 -1.403 -25.520 25.561 hybrid contribution -0.421 0.067 -1.065 1.147 sum -0.780 -1.337 -26.584 26.629 Atomic orbital electron populations 1.21932 0.95469 1.02091 1.01295 1.21204 0.95564 0.96001 0.97862 1.21923 1.01512 0.96147 1.01274 1.21062 0.95456 0.96196 0.97648 0.93890 1.21478 1.02386 0.95485 0.95081 1.20391 0.96986 1.01074 0.96721 1.20836 0.97477 0.98267 0.99352 1.20590 0.90445 0.97500 0.85354 0.92690 1.45167 1.20079 1.69700 1.03437 1.16373 0.83912 0.78845 0.81894 1.90828 1.23547 1.53971 1.84814 1.45138 1.18343 1.68208 1.05811 1.18509 0.95176 0.92837 0.78534 1.22437 1.01934 1.47985 0.94181 0.90560 1.27702 1.02901 0.92989 0.99605 1.70872 1.05587 1.41221 1.38938 0.82746 0.71305 0.77465 0.73182 1.19536 1.18414 1.21022 1.21627 0.99047 1.01823 0.93274 1.21920 0.94385 0.98097 0.99664 0.92117 0.91803 0.94119 0.89847 0.91944 0.92179 0.94182 0.90102 0.90227 0.91493 0.94413 0.89887 0.95643 0.75397 0.75931 1.00311 1.00290 0.93718 0.90627 0.89239 0.89486 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 8.86 71.98 0.64 -1.47 16 2 C -0.09 -1.20 2.35 -10.80 -0.03 -1.22 16 3 C -0.15 -2.14 8.71 71.98 0.63 -1.51 16 4 C -0.09 -1.42 1.31 -11.25 -0.01 -1.43 16 5 H 0.04 0.98 6.63 -2.38 -0.02 0.96 16 6 C -0.11 -1.65 4.98 30.20 0.15 -1.50 16 7 C -0.11 -2.46 5.27 28.74 0.15 -2.31 16 8 C -0.12 -3.00 4.89 28.74 0.14 -2.86 16 9 C 0.17 4.35 2.11 44.59 0.09 4.45 16 10 H 0.05 1.84 6.45 -2.39 -0.02 1.82 16 11 N -0.73 -21.92 5.00 -459.73 -2.30 -24.22 16 12 C 0.69 29.98 8.44 179.06 1.51 31.49 16 13 O -0.65 -34.73 16.02 -4.00 -0.06 -34.80 16 14 N -0.72 -32.41 5.55 -482.29 -2.68 -35.09 16 15 C 0.27 15.54 4.74 85.63 0.41 15.95 16 16 C -0.63 -35.34 9.28 25.60 0.24 -35.10 16 17 H 0.08 3.92 7.60 -2.91 -0.02 3.90 16 18 C -0.03 -1.94 5.46 84.66 0.46 -1.47 16 19 N -0.93 -58.88 13.65 21.45 0.29 -58.59 16 20 Si 1.13 48.68 29.90 68.60 2.05 50.73 16 21 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 22 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 23 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 24 C -0.12 -2.03 4.93 30.14 0.15 -1.88 16 25 C -0.10 -1.58 4.08 31.32 0.13 -1.45 16 26 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 27 H 0.06 0.80 6.34 -2.39 -0.02 0.79 16 28 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.06 0.82 6.66 -2.39 -0.02 0.80 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.04 0.68 8.14 -2.38 -0.02 0.66 16 33 H 0.08 1.01 6.98 -2.39 -0.02 1.00 16 34 H 0.08 1.06 5.73 -2.39 -0.01 1.05 16 35 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.04 1.00 7.46 -2.39 -0.02 0.99 16 37 H 0.08 1.62 7.47 -2.39 -0.02 1.61 16 38 H 0.02 0.83 8.01 -2.39 -0.02 0.81 16 39 H 0.41 9.23 8.51 -92.71 -0.79 8.45 16 40 H 0.41 15.14 8.33 -92.71 -0.77 14.37 16 41 H -0.02 -1.32 8.01 -2.39 -0.02 -1.34 16 42 H -0.02 -1.31 8.01 -2.39 -0.02 -1.33 16 43 H 0.25 16.73 7.22 -92.71 -0.67 16.06 16 44 H 0.08 1.20 7.85 -2.39 -0.02 1.18 16 45 H 0.09 1.15 6.63 -2.39 -0.02 1.14 16 46 H 0.09 0.97 7.98 -2.39 -0.02 0.95 16 47 H 0.05 0.93 7.33 -2.38 -0.02 0.91 16 Total: -1.00 -75.62 354.89 1.45 -74.17 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: -0.51 Total: 28.12 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: 4.65 Total: -0.32 kcal Atomic # 7 Polarization: -113.22 SS G_CDS: -4.68 Total: -117.90 kcal Atomic # 8 Polarization: -34.73 SS G_CDS: -0.06 Total: -34.80 kcal Atomic # 14 Polarization: 48.68 SS G_CDS: 2.05 Total: 50.73 kcal Total: -75.62 1.45 -74.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426450620.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.121 kcal (2) G-P(sol) polarization free energy of solvation -75.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds