Wall clock time and date at job start Tue Mar 31 2020 06:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34781 * 119.99900 * 2 1 4 4 O 1.21681 * 120.00088 * 180.02562 * 3 2 1 5 5 C 1.46375 * 119.99993 * 0.02562 * 3 2 1 6 6 H 1.08000 * 119.99499 * 359.97438 * 5 3 2 7 7 C 1.40042 * 120.00113 * 179.97438 * 5 3 2 8 8 N 1.30670 * 119.99960 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 120.00004 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46958 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46899 * 120.00176 * 9 7 5 12 12 H 1.48497 * 109.47156 * 240.00184 * 9 7 5 13 13 C 1.46497 * 120.00197 * 180.02562 * 2 1 3 14 14 C 1.53004 * 109.47192 * 230.86204 * 13 2 1 15 15 C 1.53000 * 109.47308 * 110.86370 * 13 2 1 16 16 C 1.53004 * 109.47236 * 350.86425 * 13 2 1 17 17 N 1.46901 * 109.46875 * 304.78866 * 16 13 2 18 18 C 1.48001 * 111.00487 * 277.91802 * 17 16 13 19 19 C 1.50443 * 112.82910 * 191.34657 * 18 17 16 20 20 C 1.54315 * 108.49796 * 93.72570 * 19 18 17 21 21 C 1.45877 * 112.18506 * 281.45973 * 20 19 18 22 22 C 1.54316 * 112.18236 * 61.12160 * 21 20 19 23 23 C 1.48001 * 110.99827 * 149.19409 * 17 16 13 24 24 H 1.09003 * 109.47182 * 265.75710 * 1 2 3 25 25 H 1.08996 * 109.47320 * 25.75958 * 1 2 3 26 26 H 1.09007 * 109.47339 * 145.75903 * 1 2 3 27 27 H 0.97002 * 119.99823 * 179.97438 * 8 7 5 28 28 H 1.08996 * 109.47112 * 155.77235 * 14 13 2 29 29 H 1.08995 * 109.47184 * 275.77395 * 14 13 2 30 30 H 1.09001 * 109.46817 * 35.77687 * 14 13 2 31 31 H 1.09001 * 109.47219 * 300.00132 * 15 13 2 32 32 H 1.08994 * 109.47244 * 59.99964 * 15 13 2 33 33 H 1.09001 * 109.47022 * 179.97438 * 15 13 2 34 34 H 1.08993 * 109.46798 * 64.78995 * 16 13 2 35 35 H 1.09002 * 109.47252 * 184.79579 * 16 13 2 36 36 H 1.09008 * 108.80942 * 312.20733 * 18 17 16 37 37 H 1.08996 * 108.81258 * 70.48079 * 18 17 16 38 38 H 1.08998 * 109.62963 * 334.02677 * 19 18 17 39 39 H 1.08999 * 109.63117 * 213.42791 * 19 18 17 40 40 H 1.09005 * 108.93672 * 160.76851 * 20 19 18 41 41 H 1.08995 * 108.87235 * 42.10795 * 20 19 18 42 42 H 1.09002 * 108.94504 * 300.43097 * 21 20 19 43 43 H 1.08992 * 108.94265 * 181.82091 * 21 20 19 44 44 H 1.09000 * 109.63042 * 161.75613 * 22 21 20 45 45 H 1.08998 * 109.63207 * 41.16783 * 22 21 20 46 46 H 1.09005 * 108.81184 * 205.70696 * 23 17 16 47 47 H 1.09000 * 108.81210 * 324.08727 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3556 1.1673 -0.0005 5 6 1.4069 2.4349 0.0006 6 1 0.3269 2.4348 0.0006 7 6 2.1071 3.6477 0.0011 8 7 3.4138 3.6477 0.0006 9 14 1.1730 5.2654 0.0011 10 1 -0.2869 4.9940 0.0011 11 1 1.5313 6.0439 1.2139 12 1 1.5322 6.0444 -1.2111 13 6 2.1975 -1.2687 -0.0006 14 6 3.2410 -1.2556 1.1183 15 6 2.8974 -1.4529 -1.3486 16 6 1.2191 -2.4226 0.2280 17 7 0.4647 -2.1870 1.4662 18 6 1.2443 -2.6098 2.6510 19 6 0.4210 -2.6437 3.9098 20 6 -0.1208 -4.0758 4.1020 21 6 -1.2709 -4.3489 3.2471 22 6 -0.9240 -4.2298 1.7482 23 6 -0.8922 -2.7716 1.3799 24 1 -0.3634 -0.0760 1.0249 25 1 -0.3634 0.9255 -0.4466 26 1 -0.3634 -0.8496 -0.5783 27 1 3.8988 4.4878 0.0006 28 1 3.4766 -2.2798 1.4074 29 1 4.1457 -0.7604 0.7656 30 1 2.8441 -0.7173 1.9790 31 1 2.1540 -1.4622 -2.1457 32 1 3.5944 -0.6309 -1.5114 33 1 3.4428 -2.3966 -1.3488 34 1 0.5279 -2.4847 -0.6125 35 1 1.7733 -3.3575 0.3126 36 1 1.6487 -3.6055 2.4686 37 1 2.0734 -1.9165 2.7920 38 1 -0.4117 -1.9459 3.8216 39 1 1.0433 -2.3702 4.7618 40 1 -0.4154 -4.2057 5.1434 41 1 0.6712 -4.7868 3.8673 42 1 -2.0642 -3.6399 3.4839 43 1 -1.6293 -5.3584 3.4481 44 1 -1.6823 -4.7410 1.1551 45 1 0.0529 -4.6760 1.5618 46 1 -1.5539 -2.2249 2.0519 47 1 -1.2586 -2.6603 0.3594 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428447073.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:03 Heat of formation + Delta-G solvation = -20.438997 kcal Electronic energy + Delta-G solvation = -24656.750929 eV Core-core repulsion = 21454.030512 eV Total energy + Delta-G solvation = -3202.720417 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.74056 -37.96055 -35.39213 -33.26357 -32.30582 -32.22468 -31.45283 -27.61311 -26.71510 -26.03381 -24.86231 -24.51101 -23.95280 -20.94550 -20.35917 -19.50984 -17.86786 -16.34431 -16.03115 -15.87804 -15.33357 -14.70883 -14.39381 -14.28620 -13.80724 -13.69131 -13.20625 -13.15073 -12.95074 -12.57940 -12.30524 -12.24795 -11.78433 -11.62907 -11.45062 -11.32185 -11.17085 -11.10972 -11.07036 -10.86005 -10.78234 -10.73949 -10.66451 -10.50067 -10.32846 -10.12753 -10.03349 -9.83415 -9.66138 -8.73135 -7.82487 -7.26196 -6.83539 -6.04313 -4.48031 3.19156 3.27621 3.31785 4.03446 4.20148 4.60578 4.69702 4.72167 4.77277 4.92032 5.12694 5.20605 5.41139 5.42935 5.47101 5.62653 5.64859 5.74233 5.80631 5.86849 5.93606 5.98039 5.99336 6.01099 6.08905 6.11634 6.15727 6.26105 6.28304 6.34799 6.36577 6.40555 6.51152 6.61373 6.76313 6.84169 7.01997 7.08266 7.31243 7.42780 7.46857 7.58567 7.91353 8.36736 8.61523 9.17230 9.70268 10.73823 10.96995 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022471 B = 0.005027 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.773223 B = 5569.095896 C = 5979.387274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.116 3.884 2 N -0.626 5.626 3 C 0.562 3.438 4 O -0.576 6.576 5 C -0.542 4.542 6 H 0.070 0.930 7 C 0.089 3.911 8 N -0.770 5.770 9 Si 0.901 3.099 10 H -0.265 1.265 11 H -0.278 1.278 12 H -0.278 1.278 13 C 0.191 3.809 14 C -0.140 4.140 15 C -0.154 4.154 16 C 0.062 3.938 17 N -0.530 5.530 18 C 0.052 3.948 19 C -0.120 4.120 20 C -0.120 4.120 21 C -0.115 4.115 22 C -0.148 4.148 23 C 0.059 3.941 24 H 0.045 0.955 25 H 0.056 0.944 26 H 0.028 0.972 27 H 0.264 0.736 28 H 0.030 0.970 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.043 0.957 32 H 0.076 0.924 33 H 0.042 0.958 34 H 0.069 0.931 35 H 0.036 0.964 36 H 0.025 0.975 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.063 0.937 45 H 0.061 0.939 46 H 0.072 0.928 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.492 -14.588 4.350 17.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.364 5.364 3 C 0.367 3.633 4 O -0.459 6.459 5 C -0.579 4.579 6 H 0.088 0.912 7 C -0.130 4.130 8 N -0.400 5.400 9 Si 0.726 3.274 10 H -0.189 1.189 11 H -0.204 1.204 12 H -0.204 1.204 13 C 0.104 3.896 14 C -0.198 4.198 15 C -0.213 4.213 16 C -0.066 4.066 17 N -0.254 5.254 18 C -0.074 4.074 19 C -0.158 4.158 20 C -0.158 4.158 21 C -0.152 4.152 22 C -0.188 4.188 23 C -0.069 4.069 24 H 0.063 0.937 25 H 0.074 0.926 26 H 0.046 0.954 27 H 0.075 0.925 28 H 0.049 0.951 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.061 0.939 34 H 0.087 0.913 35 H 0.054 0.946 36 H 0.043 0.957 37 H 0.107 0.893 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.090 0.910 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.728 -14.014 4.414 16.601 hybrid contribution -0.508 -0.158 -0.078 0.537 sum -8.236 -14.172 4.337 16.955 Atomic orbital electron populations 1.21369 0.82388 0.99137 0.99928 1.47834 1.04908 1.04047 1.79625 1.18087 0.86927 0.82151 0.76117 1.90545 1.13976 1.86354 1.55045 1.21081 0.93659 0.89466 1.53724 0.91177 1.25693 0.94517 1.00039 0.92759 1.70039 1.06921 1.26709 1.36322 0.86434 0.80631 0.82338 0.78031 1.18861 1.20354 1.20379 1.19890 0.90797 0.84868 0.94045 1.22282 1.00374 0.98513 0.98641 1.22177 1.00764 1.01384 0.96937 1.22486 0.96180 0.96361 0.91589 1.61860 1.02059 1.59601 1.01916 1.22191 0.96954 0.98886 0.89411 1.21438 1.00587 0.96394 0.97393 1.20607 0.98296 0.97430 0.99421 1.20527 0.98515 1.01153 0.95021 1.21954 1.01651 0.98866 0.96278 1.21968 0.91213 0.92120 1.01578 0.93660 0.92580 0.95352 0.92512 0.95071 0.91018 0.92094 0.93790 0.90508 0.93862 0.91261 0.94622 0.95684 0.89264 0.90622 0.91453 0.92520 0.92616 0.92027 0.92861 0.91846 0.92020 0.91017 0.91593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.25 8.35 59.84 0.50 2.75 16 2 N -0.63 -14.16 2.74 -168.25 -0.46 -14.62 16 3 C 0.56 15.80 7.04 -12.99 -0.09 15.71 16 4 O -0.58 -17.93 11.73 5.21 0.06 -17.87 16 5 C -0.54 -15.40 8.75 -35.63 -0.31 -15.71 16 6 H 0.07 1.86 5.91 -52.49 -0.31 1.55 16 7 C 0.09 2.50 5.50 -17.37 -0.10 2.40 16 8 N -0.77 -23.20 11.83 55.55 0.66 -22.54 16 9 Si 0.90 20.50 29.56 -169.99 -5.02 15.47 16 10 H -0.26 -5.82 7.11 56.52 0.40 -5.42 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 13 C 0.19 3.69 0.79 -131.82 -0.10 3.58 16 14 C -0.14 -2.81 6.10 37.16 0.23 -2.58 16 15 C -0.15 -2.93 8.41 37.16 0.31 -2.62 16 16 C 0.06 0.95 3.38 -3.82 -0.01 0.93 16 17 N -0.53 -7.58 2.32 -235.90 -0.55 -8.13 16 18 C 0.05 0.71 4.00 -4.49 -0.02 0.69 16 19 C -0.12 -1.41 5.63 -27.32 -0.15 -1.56 16 20 C -0.12 -1.18 5.30 -29.41 -0.16 -1.33 16 21 C -0.11 -1.07 5.30 -29.41 -0.16 -1.22 16 22 C -0.15 -1.49 5.60 -27.32 -0.15 -1.64 16 23 C 0.06 0.69 4.45 -4.50 -0.02 0.67 16 24 H 0.04 0.86 6.98 -51.93 -0.36 0.50 16 25 H 0.06 1.15 5.86 -51.93 -0.30 0.85 16 26 H 0.03 0.47 5.49 -51.93 -0.29 0.19 16 27 H 0.26 7.26 8.29 -40.82 -0.34 6.93 16 28 H 0.03 0.52 7.08 -51.93 -0.37 0.15 16 29 H 0.07 1.66 6.63 -51.93 -0.34 1.31 16 30 H 0.06 1.33 6.46 -51.93 -0.34 0.99 16 31 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 1.76 6.83 -51.93 -0.35 1.41 16 33 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 1.02 6.08 -51.93 -0.32 0.70 16 35 H 0.04 0.51 7.53 -51.93 -0.39 0.12 16 36 H 0.03 0.33 6.18 -51.92 -0.32 0.01 16 37 H 0.09 1.42 4.52 -51.93 -0.23 1.19 16 38 H 0.08 0.95 7.08 -51.93 -0.37 0.58 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.56 7.51 -51.93 -0.39 0.17 16 42 H 0.06 0.57 7.52 -51.93 -0.39 0.18 16 43 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.68 7.00 -51.93 -0.36 0.31 16 46 H 0.07 0.85 6.59 -51.93 -0.34 0.51 16 47 H 0.07 0.76 6.82 -51.93 -0.35 0.41 16 LS Contribution 333.31 15.07 5.02 5.02 Total: -1.00 -32.07 333.31 -8.33 -40.40 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -7.80 Total: 2.20 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -0.23 Total: 0.07 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: -0.35 Total: -45.29 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: 0.06 Total: -17.87 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.07 -8.33 -40.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428447073.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.958 kcal (2) G-P(sol) polarization free energy of solvation -32.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds