Wall clock time and date at job start Tue Mar 31 2020 05:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47444 * 2 1 4 4 C 1.52998 * 109.46902 * 299.99983 * 3 2 1 5 5 C 1.53007 * 109.46842 * 59.99689 * 3 2 1 6 6 N 1.46892 * 109.47334 * 179.97438 * 3 2 1 7 7 C 1.46901 * 111.00157 * 178.19949 * 6 3 2 8 8 H 1.09000 * 109.47272 * 6.77010 * 7 6 3 9 9 C 1.53000 * 109.47042 * 246.77484 * 7 6 3 10 10 C 1.50700 * 109.47498 * 126.77348 * 7 6 3 11 11 O 1.21283 * 119.99915 * 22.77614 * 10 7 6 12 12 N 1.34776 * 120.00115 * 202.77340 * 10 7 6 13 13 C 1.46500 * 119.99714 * 185.43840 * 12 10 7 14 14 C 1.53000 * 109.46761 * 184.81005 * 13 12 10 15 15 C 1.50705 * 115.55033 * 64.91247 * 14 13 12 16 16 H 1.07996 * 119.99848 * 264.70321 * 15 14 13 17 17 C 1.37875 * 119.99697 * 84.71093 * 15 14 13 18 18 N 1.31518 * 120.00323 * 2.00534 * 17 15 14 19 19 Si 1.86800 * 120.00036 * 182.00841 * 17 15 14 20 20 H 1.48502 * 109.47110 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47076 * 119.99437 * 19 17 15 22 22 H 1.48489 * 109.47563 * 239.99952 * 19 17 15 23 23 C 1.53002 * 117.49921 * 279.24595 * 14 13 12 24 24 C 1.52998 * 117.49858 * 210.58552 * 14 13 12 25 25 H 1.08997 * 109.47285 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46970 * 300.00144 * 1 2 3 27 27 H 1.08999 * 109.47096 * 60.00081 * 1 2 3 28 28 H 1.09003 * 109.47326 * 239.99779 * 2 1 3 29 29 H 1.08999 * 109.47096 * 119.99919 * 2 1 3 30 30 H 1.09006 * 109.47263 * 58.77108 * 4 3 2 31 31 H 1.09003 * 109.46837 * 178.77083 * 4 3 2 32 32 H 1.08996 * 109.47201 * 298.77400 * 4 3 2 33 33 H 1.08997 * 109.46819 * 61.94492 * 5 3 2 34 34 H 1.09000 * 109.46449 * 181.93854 * 5 3 2 35 35 H 1.09002 * 109.47177 * 301.93974 * 5 3 2 36 36 H 1.00902 * 111.00345 * 54.24197 * 6 3 2 37 37 H 1.08995 * 109.47494 * 184.64657 * 9 7 6 38 38 H 1.09004 * 109.47262 * 304.65055 * 9 7 6 39 39 H 1.09003 * 109.47070 * 64.64654 * 9 7 6 40 40 H 0.97003 * 119.99976 * 5.43695 * 12 10 7 41 41 H 1.09001 * 109.47034 * 304.80534 * 13 12 10 42 42 H 1.09001 * 109.47405 * 64.80943 * 13 12 10 43 43 H 0.96992 * 120.00211 * 174.99945 * 18 17 15 44 44 H 1.09001 * 117.49792 * 359.97438 * 23 14 13 45 45 H 1.08999 * 117.50185 * 145.02588 * 23 14 13 46 46 H 1.09008 * 117.49788 * 214.98227 * 24 14 13 47 47 H 1.09007 * 117.49984 * 359.97201 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5301 2.1637 -1.2492 5 6 1.5300 2.1637 1.2493 6 7 3.5090 1.4424 0.0006 7 6 4.0356 2.8132 -0.0425 8 1 3.2131 3.5216 0.0560 9 6 4.7500 3.0434 -1.3757 10 6 5.0092 3.0132 1.0903 11 8 5.5583 2.0563 1.5941 12 7 5.2699 4.2554 1.5434 13 6 6.3028 4.4620 2.5616 14 6 6.3154 5.9324 2.9842 15 6 5.0699 6.4198 3.6785 16 1 4.2937 6.9127 3.1120 17 6 4.9214 6.2367 5.0370 18 7 5.8836 5.6721 5.7335 19 14 3.3536 6.7904 5.8883 20 1 2.4340 7.3920 4.8895 21 1 2.6966 5.6208 6.5252 22 1 3.6838 7.7990 6.9268 23 6 7.0525 6.9213 2.0788 24 6 7.6522 6.5275 3.4310 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 0.4403 2.1447 -1.2603 31 1 1.8754 3.1975 -1.2383 32 1 1.9113 1.6627 -2.1391 33 1 1.9215 1.6704 2.1389 34 1 1.8648 3.2009 1.2320 35 1 0.4406 2.1337 1.2668 36 1 3.8710 0.8918 -0.7636 37 1 5.2113 4.0309 -1.3750 38 1 5.5191 2.2831 -1.5119 39 1 4.0284 2.9801 -2.1902 40 1 4.7736 5.0128 1.1953 41 1 6.0887 3.8366 3.4283 42 1 7.2763 4.1934 2.1513 43 1 5.8107 5.6087 6.6986 44 1 7.5288 6.5243 1.1824 45 1 6.6369 7.9247 1.9858 46 1 7.6308 7.2719 4.2271 47 1 8.5227 5.8713 3.4244 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435958891.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:41 Heat of formation + Delta-G solvation = -25.258483 kcal Electronic energy + Delta-G solvation = -23454.411455 eV Core-core repulsion = 20251.482050 eV Total energy + Delta-G solvation = -3202.929405 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.65661 -38.10989 -36.57603 -33.99185 -33.09929 -31.92928 -30.18511 -28.41338 -27.43921 -26.43017 -25.29851 -24.35415 -22.60305 -21.13621 -19.54851 -19.14347 -18.91560 -17.04078 -16.24366 -15.64591 -15.30446 -14.78353 -14.66247 -14.40099 -14.19041 -13.98142 -13.74670 -13.37280 -12.94318 -12.85210 -12.67106 -12.32300 -12.22478 -12.13876 -11.92554 -11.69304 -11.51976 -11.24569 -11.21902 -11.03181 -10.99608 -10.87409 -10.77761 -10.51333 -10.47246 -10.23350 -9.55667 -9.20424 -8.98309 -8.46277 -8.31938 -8.13250 -7.94495 -6.04660 -4.13996 3.26416 3.35530 3.36239 3.36954 3.73358 4.33665 4.38733 4.66913 4.83235 5.05158 5.07675 5.13949 5.20867 5.23614 5.24420 5.33976 5.39028 5.46386 5.55396 5.61788 5.73069 5.74243 5.81146 5.86245 5.97232 6.02489 6.05359 6.07427 6.09949 6.30253 6.36205 6.42739 6.50970 6.58845 6.70865 6.92965 7.08265 7.13793 7.39809 7.46344 7.48250 7.56043 7.84059 8.36622 8.45421 8.87093 9.09032 9.53124 11.03126 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016613 B = 0.004839 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.054796 B = 5784.725235 C = 6803.104878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.110 4.110 3 C 0.110 3.890 4 C -0.184 4.184 5 C -0.145 4.145 6 N -0.655 5.655 7 C 0.065 3.935 8 H 0.090 0.910 9 C -0.165 4.165 10 C 0.510 3.490 11 O -0.536 6.536 12 N -0.709 5.709 13 C 0.165 3.835 14 C 0.027 3.973 15 C -0.496 4.496 16 H 0.059 0.941 17 C 0.073 3.927 18 N -0.875 5.875 19 Si 0.888 3.112 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.212 4.212 24 C -0.145 4.145 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.344 0.656 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.395 0.605 41 H 0.071 0.929 42 H 0.032 0.968 43 H 0.260 0.740 44 H 0.064 0.936 45 H 0.077 0.923 46 H 0.085 0.915 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.024 -5.993 -14.296 17.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.148 4.148 3 C 0.019 3.981 4 C -0.243 4.243 5 C -0.202 4.202 6 N -0.287 5.287 7 C -0.048 4.048 8 H 0.108 0.892 9 C -0.224 4.224 10 C 0.294 3.706 11 O -0.413 6.413 12 N -0.359 5.359 13 C 0.042 3.958 14 C 0.026 3.974 15 C -0.534 4.534 16 H 0.077 0.923 17 C -0.131 4.131 18 N -0.511 5.511 19 Si 0.716 3.284 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.249 4.249 24 C -0.183 4.183 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.164 0.836 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.229 0.771 41 H 0.089 0.911 42 H 0.050 0.950 43 H 0.070 0.930 44 H 0.082 0.918 45 H 0.096 0.904 46 H 0.103 0.897 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.515 -6.866 -13.046 16.547 hybrid contribution -1.136 1.011 -0.442 1.584 sum -8.651 -5.856 -13.488 17.060 Atomic orbital electron populations 1.21898 0.95683 1.01504 1.02086 1.21487 0.95532 0.95213 1.02531 1.21020 0.87023 0.95514 0.94561 1.22708 1.02205 1.01012 0.98343 1.21986 1.00342 1.00363 0.97540 1.60165 1.05884 1.10937 1.51693 1.21503 0.97253 0.92075 0.93999 0.89238 1.22265 1.01105 1.03395 0.95646 1.20449 0.82928 0.83198 0.84065 1.90628 1.51731 1.40368 1.58543 1.45963 1.40044 1.07892 1.42016 1.20935 0.87382 0.97838 0.89636 1.19054 0.93126 0.88248 0.96960 1.20368 1.01806 1.38608 0.92600 0.92274 1.24972 0.96217 0.94317 0.97567 1.69995 1.32270 1.42272 1.06536 0.86602 0.83806 0.78305 0.79672 1.19766 1.20958 1.21033 1.23020 1.07679 1.00816 0.93418 1.22463 0.96846 1.03389 0.95594 0.92865 0.92177 0.92632 0.92308 0.90908 0.91787 0.92322 0.92807 0.91483 0.92530 0.92088 0.83640 0.91208 0.91545 0.91917 0.77135 0.91112 0.94979 0.92960 0.91762 0.90444 0.89677 0.91831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.21 37.16 0.34 -0.96 16 2 C -0.11 -1.10 5.23 -26.73 -0.14 -1.24 16 3 C 0.11 1.23 0.72 -131.60 -0.10 1.13 16 4 C -0.18 -1.69 7.50 37.16 0.28 -1.41 16 5 C -0.14 -1.86 8.04 37.16 0.30 -1.56 16 6 N -0.66 -8.74 5.60 -94.25 -0.53 -9.27 16 7 C 0.07 0.90 1.93 -68.86 -0.13 0.77 16 8 H 0.09 1.16 4.73 -51.93 -0.25 0.92 16 9 C -0.17 -1.83 8.98 37.16 0.33 -1.50 16 10 C 0.51 9.71 7.05 -10.99 -0.08 9.63 16 11 O -0.54 -12.50 16.57 5.55 0.09 -12.41 16 12 N -0.71 -13.85 5.45 -60.29 -0.33 -14.18 16 13 C 0.17 3.81 5.53 -4.04 -0.02 3.79 16 14 C 0.03 0.63 1.42 -155.66 -0.22 0.41 16 15 C -0.50 -12.85 8.70 -34.44 -0.30 -13.15 16 16 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 17 C 0.07 1.96 5.43 -17.82 -0.10 1.87 16 18 N -0.87 -24.62 12.72 55.43 0.71 -23.92 16 19 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 C -0.21 -4.39 9.96 -26.69 -0.27 -4.65 16 24 C -0.14 -3.33 9.23 -26.69 -0.25 -3.58 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.53 6.39 -51.93 -0.33 0.20 16 27 H 0.05 0.43 6.40 -51.93 -0.33 0.09 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.54 6.36 -51.93 -0.33 0.21 16 31 H 0.06 0.55 6.37 -51.93 -0.33 0.22 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.77 6.43 -51.93 -0.33 0.44 16 35 H 0.06 0.66 6.33 -51.93 -0.33 0.33 16 36 H 0.34 4.08 8.08 -39.29 -0.32 3.76 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.77 8.10 -51.93 -0.42 0.34 16 39 H 0.06 0.56 7.58 -51.93 -0.39 0.16 16 40 H 0.40 6.99 8.45 -40.82 -0.34 6.65 16 41 H 0.07 1.91 8.10 -51.93 -0.42 1.49 16 42 H 0.03 0.72 8.09 -51.93 -0.42 0.30 16 43 H 0.26 7.05 8.32 -40.82 -0.34 6.71 16 44 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 45 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 46 H 0.08 2.10 8.14 -51.92 -0.42 1.67 16 47 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16 LS Contribution 369.10 15.07 5.56 5.56 Total: -1.00 -30.14 369.10 -8.19 -38.33 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -8.32 Total: 10.53 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: -0.34 Total: -10.46 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: -0.15 Total: -47.37 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.09 Total: -12.41 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.14 -8.19 -38.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435958891.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.071 kcal (2) G-P(sol) polarization free energy of solvation -30.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds