Wall clock time and date at job start Tue Mar 31 2020 05:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47444 * 2 1 4 4 C 1.52998 * 109.46902 * 299.99983 * 3 2 1 5 5 C 1.53007 * 109.46842 * 59.99689 * 3 2 1 6 6 N 1.46892 * 109.47334 * 179.97438 * 3 2 1 7 7 C 1.46901 * 111.00157 * 178.19949 * 6 3 2 8 8 H 1.09000 * 109.47272 * 6.77010 * 7 6 3 9 9 C 1.53000 * 109.47042 * 246.77484 * 7 6 3 10 10 C 1.50700 * 109.47498 * 126.77348 * 7 6 3 11 11 O 1.21283 * 119.99915 * 22.77614 * 10 7 6 12 12 N 1.34776 * 120.00115 * 202.77340 * 10 7 6 13 13 C 1.46500 * 119.99714 * 185.43840 * 12 10 7 14 14 C 1.53000 * 109.46761 * 184.81005 * 13 12 10 15 15 C 1.50705 * 115.55033 * 64.91247 * 14 13 12 16 16 H 1.07996 * 119.99848 * 264.70321 * 15 14 13 17 17 C 1.37875 * 119.99697 * 84.71093 * 15 14 13 18 18 N 1.31518 * 120.00323 * 2.00534 * 17 15 14 19 19 Si 1.86800 * 120.00036 * 182.00841 * 17 15 14 20 20 H 1.48502 * 109.47110 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47076 * 119.99437 * 19 17 15 22 22 H 1.48489 * 109.47563 * 239.99952 * 19 17 15 23 23 C 1.53002 * 117.49921 * 279.24595 * 14 13 12 24 24 C 1.52998 * 117.49858 * 210.58552 * 14 13 12 25 25 H 1.08997 * 109.47285 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46970 * 300.00144 * 1 2 3 27 27 H 1.08999 * 109.47096 * 60.00081 * 1 2 3 28 28 H 1.09003 * 109.47326 * 239.99779 * 2 1 3 29 29 H 1.08999 * 109.47096 * 119.99919 * 2 1 3 30 30 H 1.09006 * 109.47263 * 58.77108 * 4 3 2 31 31 H 1.09003 * 109.46837 * 178.77083 * 4 3 2 32 32 H 1.08996 * 109.47201 * 298.77400 * 4 3 2 33 33 H 1.08997 * 109.46819 * 61.94492 * 5 3 2 34 34 H 1.09000 * 109.46449 * 181.93854 * 5 3 2 35 35 H 1.09002 * 109.47177 * 301.93974 * 5 3 2 36 36 H 1.00902 * 111.00345 * 54.24197 * 6 3 2 37 37 H 1.08995 * 109.47494 * 184.64657 * 9 7 6 38 38 H 1.09004 * 109.47262 * 304.65055 * 9 7 6 39 39 H 1.09003 * 109.47070 * 64.64654 * 9 7 6 40 40 H 0.97003 * 119.99976 * 5.43695 * 12 10 7 41 41 H 1.09001 * 109.47034 * 304.80534 * 13 12 10 42 42 H 1.09001 * 109.47405 * 64.80943 * 13 12 10 43 43 H 0.96992 * 120.00211 * 174.99945 * 18 17 15 44 44 H 1.09001 * 117.49792 * 359.97438 * 23 14 13 45 45 H 1.08999 * 117.50185 * 145.02588 * 23 14 13 46 46 H 1.09008 * 117.49788 * 214.98227 * 24 14 13 47 47 H 1.09007 * 117.49984 * 359.97201 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5301 2.1637 -1.2492 5 6 1.5300 2.1637 1.2493 6 7 3.5090 1.4424 0.0006 7 6 4.0356 2.8132 -0.0425 8 1 3.2131 3.5216 0.0560 9 6 4.7500 3.0434 -1.3757 10 6 5.0092 3.0132 1.0903 11 8 5.5583 2.0563 1.5941 12 7 5.2699 4.2554 1.5434 13 6 6.3028 4.4620 2.5616 14 6 6.3154 5.9324 2.9842 15 6 5.0699 6.4198 3.6785 16 1 4.2937 6.9127 3.1120 17 6 4.9214 6.2367 5.0370 18 7 5.8836 5.6721 5.7335 19 14 3.3536 6.7904 5.8883 20 1 2.4340 7.3920 4.8895 21 1 2.6966 5.6208 6.5252 22 1 3.6838 7.7990 6.9268 23 6 7.0525 6.9213 2.0788 24 6 7.6522 6.5275 3.4310 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 0.4403 2.1447 -1.2603 31 1 1.8754 3.1975 -1.2383 32 1 1.9113 1.6627 -2.1391 33 1 1.9215 1.6704 2.1389 34 1 1.8648 3.2009 1.2320 35 1 0.4406 2.1337 1.2668 36 1 3.8710 0.8918 -0.7636 37 1 5.2113 4.0309 -1.3750 38 1 5.5191 2.2831 -1.5119 39 1 4.0284 2.9801 -2.1902 40 1 4.7736 5.0128 1.1953 41 1 6.0887 3.8366 3.4283 42 1 7.2763 4.1934 2.1513 43 1 5.8107 5.6087 6.6986 44 1 7.5288 6.5243 1.1824 45 1 6.6369 7.9247 1.9858 46 1 7.6308 7.2719 4.2271 47 1 8.5227 5.8713 3.4244 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435958891.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:40 Heat of formation + Delta-G solvation = -45.195786 kcal Electronic energy + Delta-G solvation = -23455.276001 eV Core-core repulsion = 20251.482050 eV Total energy + Delta-G solvation = -3203.793951 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.95515 -39.38667 -38.32678 -35.07688 -34.75212 -33.94392 -31.05156 -29.40521 -28.40429 -28.05768 -27.18575 -25.27957 -23.78442 -22.90290 -21.30080 -20.72588 -19.86102 -18.48365 -17.88652 -16.86046 -16.81674 -16.56203 -15.93760 -15.69976 -15.62855 -15.22944 -14.92075 -14.56122 -14.31644 -14.19138 -13.83982 -13.54460 -13.42275 -13.17600 -13.13444 -12.97316 -12.93240 -12.84611 -12.72745 -12.35382 -12.16347 -12.14496 -12.01519 -11.99127 -11.59093 -11.42011 -11.32062 -10.91446 -10.73779 -10.43769 -10.04185 -9.73974 -9.23715 -8.09857 -6.23427 1.38568 1.42259 1.51053 1.87614 2.35383 2.42266 3.19183 3.25127 3.52995 3.81217 3.91910 4.04159 4.10798 4.19570 4.24978 4.28253 4.47632 4.56710 4.57819 4.62381 4.66831 4.72181 4.73333 4.75523 4.82403 4.88942 4.99424 5.01253 5.07815 5.10480 5.15753 5.18212 5.24167 5.27333 5.29638 5.48412 5.51735 5.60002 5.64400 5.75226 5.80053 6.11717 6.36969 6.55446 6.84156 6.92475 7.46312 7.55702 8.97941 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016613 B = 0.004839 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.054796 B = 5784.725235 C = 6803.104878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.107 4.107 3 C 0.111 3.889 4 C -0.177 4.177 5 C -0.145 4.145 6 N -0.678 5.678 7 C 0.078 3.922 8 H 0.103 0.897 9 C -0.158 4.158 10 C 0.503 3.497 11 O -0.586 6.586 12 N -0.704 5.704 13 C 0.182 3.818 14 C 0.003 3.997 15 C -0.498 4.498 16 H 0.064 0.936 17 C 0.022 3.978 18 N -0.910 5.910 19 Si 0.946 3.054 20 H -0.259 1.259 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.173 4.173 24 C -0.158 4.158 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.048 0.952 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.032 0.968 34 H 0.045 0.955 35 H 0.081 0.919 36 H 0.353 0.647 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.094 0.906 40 H 0.407 0.593 41 H 0.019 0.981 42 H 0.033 0.967 43 H 0.257 0.743 44 H 0.091 0.909 45 H 0.086 0.914 46 H 0.063 0.937 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.772 -5.265 -17.239 20.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.145 4.145 3 C 0.021 3.979 4 C -0.236 4.236 5 C -0.203 4.203 6 N -0.311 5.311 7 C -0.035 4.035 8 H 0.120 0.880 9 C -0.216 4.216 10 C 0.290 3.710 11 O -0.465 6.465 12 N -0.354 5.354 13 C 0.057 3.943 14 C 0.002 3.998 15 C -0.536 4.536 16 H 0.082 0.918 17 C -0.178 4.178 18 N -0.548 5.548 19 Si 0.772 3.228 20 H -0.183 1.183 21 H -0.219 1.219 22 H -0.208 1.208 23 C -0.210 4.210 24 C -0.196 4.196 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.051 0.949 34 H 0.064 0.936 35 H 0.099 0.901 36 H 0.174 0.826 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.113 0.887 40 H 0.242 0.758 41 H 0.038 0.962 42 H 0.052 0.948 43 H 0.066 0.934 44 H 0.110 0.890 45 H 0.105 0.895 46 H 0.081 0.919 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.293 -6.113 -16.029 19.510 hybrid contribution -0.573 0.737 0.495 1.057 sum -9.866 -5.375 -15.534 19.171 Atomic orbital electron populations 1.21874 0.94223 1.02238 1.02456 1.21468 0.96743 0.94326 1.02010 1.21053 0.85716 0.96338 0.94840 1.22629 1.02978 1.00696 0.97313 1.22011 1.01627 0.99450 0.97183 1.60006 1.07468 1.10899 1.52681 1.21388 0.96334 0.92853 0.92973 0.87984 1.22237 1.01492 1.03366 0.94519 1.21575 0.82858 0.82021 0.84577 1.90601 1.53785 1.41754 1.60395 1.45879 1.39501 1.08885 1.41132 1.20483 0.88414 0.96654 0.88752 1.19061 0.92745 0.88954 0.98993 1.20704 1.02603 1.37579 0.92734 0.91835 1.25703 0.98737 0.94795 0.98590 1.70122 1.34195 1.43993 1.06458 0.85687 0.80712 0.77517 0.78849 1.18258 1.21862 1.20772 1.23010 1.04862 1.00216 0.92925 1.22390 0.96950 1.03387 0.96890 0.92060 0.92818 0.91139 0.90985 0.93308 0.90576 0.92287 0.91276 0.94861 0.93565 0.90070 0.82601 0.90824 0.92144 0.88748 0.75794 0.96213 0.94835 0.93354 0.89044 0.89522 0.91864 0.91381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.21 71.98 0.66 -1.54 16 2 C -0.11 -2.00 5.23 30.60 0.16 -1.84 16 3 C 0.11 2.29 0.72 3.53 0.00 2.29 16 4 C -0.18 -2.62 7.50 71.98 0.54 -2.08 16 5 C -0.15 -3.64 8.04 71.98 0.58 -3.07 16 6 N -0.68 -17.34 5.60 -452.10 -2.53 -19.87 16 7 C 0.08 2.04 1.93 44.17 0.09 2.12 16 8 H 0.10 2.43 4.73 -2.39 -0.01 2.42 16 9 C -0.16 -3.03 8.98 71.98 0.65 -2.39 16 10 C 0.50 19.25 7.05 87.66 0.62 19.87 16 11 O -0.59 -28.21 16.57 -3.04 -0.05 -28.26 16 12 N -0.70 -27.41 5.45 -463.06 -2.52 -29.94 16 13 C 0.18 8.56 5.53 86.38 0.48 9.03 16 14 C 0.00 0.15 1.42 -52.93 -0.08 0.08 16 15 C -0.50 -25.78 8.70 25.60 0.22 -25.56 16 16 H 0.06 3.16 7.81 -2.91 -0.02 3.14 16 17 C 0.02 1.19 5.43 84.65 0.46 1.65 16 18 N -0.91 -52.84 12.72 21.45 0.27 -52.57 16 19 Si 0.95 43.15 29.54 68.60 2.03 45.18 16 20 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 21 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 22 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 23 C -0.17 -6.80 9.96 30.62 0.30 -6.50 16 24 C -0.16 -7.29 9.23 30.62 0.28 -7.01 16 25 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.05 0.85 6.39 -2.39 -0.02 0.84 16 27 H 0.07 0.84 6.40 -2.39 -0.02 0.82 16 28 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.08 0.97 6.36 -2.38 -0.02 0.95 16 31 H 0.06 0.89 6.37 -2.39 -0.02 0.87 16 32 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.05 1.22 6.43 -2.39 -0.02 1.21 16 35 H 0.08 1.65 6.33 -2.39 -0.02 1.64 16 36 H 0.35 7.77 8.08 -89.69 -0.72 7.04 16 37 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.06 1.26 8.10 -2.38 -0.02 1.24 16 39 H 0.09 1.26 7.58 -2.39 -0.02 1.24 16 40 H 0.41 13.89 8.45 -92.71 -0.78 13.11 16 41 H 0.02 1.11 8.10 -2.39 -0.02 1.09 16 42 H 0.03 1.54 8.09 -2.39 -0.02 1.52 16 43 H 0.26 14.42 8.32 -92.71 -0.77 13.65 16 44 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 45 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 46 H 0.06 3.17 8.14 -2.38 -0.02 3.15 16 47 H 0.07 3.02 8.14 -2.38 -0.02 3.00 16 Total: -1.00 -67.74 369.10 1.60 -66.14 By element: Atomic # 1 Polarization: 34.81 SS G_CDS: -0.55 Total: 34.25 kcal Atomic # 6 Polarization: -19.90 SS G_CDS: 4.97 Total: -14.93 kcal Atomic # 7 Polarization: -97.59 SS G_CDS: -4.78 Total: -102.38 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -0.05 Total: -28.26 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -67.74 1.60 -66.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435958891.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.943 kcal (2) G-P(sol) polarization free energy of solvation -67.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds