Wall clock time and date at job start Tue Mar 31 2020 05:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.46799 * 2 1 4 4 C 1.53002 * 109.47716 * 59.99819 * 3 2 1 5 5 C 1.53000 * 109.47268 * 299.99466 * 3 2 1 6 6 N 1.46909 * 109.47001 * 179.97438 * 3 2 1 7 7 C 1.46896 * 110.99768 * 183.08453 * 6 3 2 8 8 H 1.08999 * 109.47859 * 351.06541 * 7 6 3 9 9 C 1.53000 * 109.47175 * 111.06974 * 7 6 3 10 10 C 1.50704 * 109.47211 * 231.06556 * 7 6 3 11 11 O 1.21290 * 119.99629 * 344.57497 * 10 7 6 12 12 N 1.34770 * 120.00354 * 164.56807 * 10 7 6 13 13 C 1.46505 * 120.00115 * 184.57873 * 12 10 7 14 14 C 1.52997 * 109.46964 * 185.03133 * 13 12 10 15 15 C 1.50707 * 115.55055 * 65.76580 * 14 13 12 16 16 H 1.08004 * 119.99516 * 267.52748 * 15 14 13 17 17 C 1.37866 * 119.99975 * 87.52444 * 15 14 13 18 18 N 1.31522 * 120.00055 * 181.29859 * 17 15 14 19 19 Si 1.86802 * 120.00559 * 1.30160 * 17 15 14 20 20 H 1.48498 * 109.47326 * 85.98066 * 19 17 15 21 21 H 1.48498 * 109.47432 * 205.98810 * 19 17 15 22 22 H 1.48503 * 109.46847 * 325.98337 * 19 17 15 23 23 C 1.53000 * 117.50299 * 280.08978 * 14 13 12 24 24 C 1.53001 * 117.49780 * 211.42945 * 14 13 12 25 25 H 1.09004 * 109.47240 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47540 * 300.00072 * 1 2 3 27 27 H 1.09003 * 109.47319 * 60.00230 * 1 2 3 28 28 H 1.08995 * 109.47540 * 239.99928 * 2 1 3 29 29 H 1.09005 * 109.46822 * 119.99635 * 2 1 3 30 30 H 1.08993 * 109.47711 * 174.28822 * 4 3 2 31 31 H 1.09001 * 109.47093 * 294.28960 * 4 3 2 32 32 H 1.09004 * 109.47008 * 54.28791 * 4 3 2 33 33 H 1.08993 * 109.47065 * 301.23422 * 5 3 2 34 34 H 1.08998 * 109.46930 * 61.23677 * 5 3 2 35 35 H 1.09002 * 109.47433 * 181.23183 * 5 3 2 36 36 H 1.00900 * 110.99474 * 307.03736 * 6 3 2 37 37 H 1.08999 * 109.47093 * 294.76684 * 9 7 6 38 38 H 1.09006 * 109.47388 * 174.76692 * 9 7 6 39 39 H 1.08999 * 109.47292 * 54.76619 * 9 7 6 40 40 H 0.96998 * 119.99839 * 4.57873 * 12 10 7 41 41 H 1.08993 * 109.46997 * 305.03148 * 13 12 10 42 42 H 1.09000 * 109.46880 * 65.03183 * 13 12 10 43 43 H 0.97000 * 120.00309 * 179.97438 * 18 17 15 44 44 H 1.09005 * 117.49692 * 0.02562 * 23 14 13 45 45 H 1.08999 * 117.49837 * 145.01892 * 23 14 13 46 46 H 1.08999 * 117.49757 * 214.98060 * 24 14 13 47 47 H 1.09000 * 117.50163 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5299 2.1639 1.2492 5 6 1.5300 2.1637 -1.2493 6 7 3.5090 1.4425 0.0006 7 6 4.0353 2.8120 0.0744 8 1 3.2178 3.5226 -0.0475 9 6 4.7016 3.0297 1.4344 10 6 5.0494 3.0202 -1.0208 11 8 5.5163 2.0649 -1.6044 12 7 5.4372 4.2677 -1.3518 13 6 6.3459 4.4766 -2.4819 14 6 6.7243 5.9567 -2.5650 15 6 7.5379 6.4854 -1.4118 16 1 7.0435 6.9377 -0.5648 17 6 8.9131 6.3915 -1.4381 18 7 9.6218 6.8297 -0.4205 19 14 9.7701 5.6421 -2.9191 20 1 9.9849 6.6898 -3.9494 21 1 11.0806 5.0820 -2.5018 22 1 8.9260 4.5585 -3.4836 23 6 5.7170 6.9082 -3.2137 24 6 7.0053 6.5372 -3.9525 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.9742 3.1577 1.3018 31 1 0.4447 2.2532 1.1995 32 1 1.8073 1.5944 2.1363 33 1 1.8752 1.6373 -2.1390 34 1 0.4402 2.1829 -1.2383 35 1 1.9112 3.1848 -1.2604 36 1 3.8702 0.8752 0.7528 37 1 3.9494 2.9709 2.2211 38 1 5.1729 4.0124 1.4550 39 1 5.4572 2.2609 1.5960 40 1 5.1148 5.0272 -0.8419 41 1 7.2461 3.8789 -2.3396 42 1 5.8520 4.1754 -3.4057 43 1 10.5893 6.7633 -0.4388 44 1 4.7844 6.4798 -3.5810 45 1 5.6429 7.9166 -2.8066 46 1 7.7782 7.3017 -4.0311 47 1 6.9210 5.8646 -4.8060 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435958892.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:45 Heat of formation + Delta-G solvation = -20.913741 kcal Electronic energy + Delta-G solvation = -23394.006258 eV Core-core repulsion = 20191.265255 eV Total energy + Delta-G solvation = -3202.741003 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.75526 -38.26611 -36.92969 -34.05189 -33.25928 -32.11451 -30.22144 -28.50053 -27.54108 -26.70804 -25.31987 -24.42152 -22.70238 -21.72064 -19.59237 -19.13475 -18.97999 -17.12913 -16.46188 -15.72768 -15.47441 -14.99428 -14.88350 -14.38335 -14.29363 -13.99188 -13.71427 -13.37949 -13.23407 -12.78559 -12.72871 -12.43343 -12.35131 -12.28748 -12.17945 -12.02754 -11.83624 -11.34039 -11.29499 -11.16163 -11.11055 -10.86244 -10.76621 -10.54914 -10.46215 -10.16761 -9.67879 -9.28828 -9.16231 -8.64902 -8.58093 -8.25766 -8.15798 -6.15054 -4.19399 3.27932 3.30278 3.40294 3.45597 3.59770 4.25848 4.41349 4.59247 4.74644 4.89485 4.99394 5.06536 5.13314 5.14710 5.15768 5.24379 5.29589 5.38641 5.49759 5.52959 5.67751 5.70741 5.73323 5.77474 5.81510 5.90985 5.93301 5.99128 6.03227 6.07855 6.15552 6.22114 6.27066 6.28303 6.42081 6.55976 6.71459 7.01307 7.02265 7.10286 7.26322 7.40772 7.69032 8.31270 8.41708 8.84565 8.96593 9.48414 10.96323 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027064 B = 0.003990 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.343480 B = 7016.336958 C = 7257.550793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C 0.110 3.890 4 C -0.185 4.185 5 C -0.142 4.142 6 N -0.656 5.656 7 C 0.067 3.933 8 H 0.092 0.908 9 C -0.171 4.171 10 C 0.511 3.489 11 O -0.535 6.535 12 N -0.709 5.709 13 C 0.159 3.841 14 C -0.014 4.014 15 C -0.489 4.489 16 H 0.078 0.922 17 C 0.080 3.920 18 N -0.896 5.896 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.295 1.295 22 H -0.259 1.259 23 C -0.179 4.179 24 C -0.196 4.196 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.346 0.654 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.399 0.601 41 H 0.064 0.936 42 H 0.039 0.961 43 H 0.265 0.735 44 H 0.072 0.928 45 H 0.087 0.913 46 H 0.090 0.910 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.122 -8.614 2.438 19.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C 0.019 3.981 4 C -0.244 4.244 5 C -0.199 4.199 6 N -0.287 5.287 7 C -0.047 4.047 8 H 0.110 0.890 9 C -0.230 4.230 10 C 0.295 3.705 11 O -0.412 6.412 12 N -0.359 5.359 13 C 0.035 3.965 14 C -0.016 4.016 15 C -0.526 4.526 16 H 0.096 0.904 17 C -0.123 4.123 18 N -0.533 5.533 19 Si 0.708 3.292 20 H -0.203 1.203 21 H -0.222 1.222 22 H -0.183 1.183 23 C -0.216 4.216 24 C -0.233 4.233 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.166 0.834 37 H 0.081 0.919 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.233 0.767 41 H 0.083 0.917 42 H 0.057 0.943 43 H 0.075 0.925 44 H 0.091 0.909 45 H 0.105 0.895 46 H 0.109 0.891 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.532 -9.332 1.384 19.034 hybrid contribution 0.396 0.359 0.440 0.692 sum -16.136 -8.973 1.824 18.553 Atomic orbital electron populations 1.21873 0.95647 1.01532 1.02029 1.21507 0.95561 0.95179 1.02592 1.21009 0.87119 0.95501 0.94487 1.22731 1.02078 1.01135 0.98485 1.21954 1.00180 1.00234 0.97560 1.60165 1.05791 1.10134 1.52657 1.21482 0.96937 0.92093 0.94164 0.88990 1.22349 1.01322 1.04150 0.95171 1.20501 0.82754 0.83060 0.84184 1.90631 1.55852 1.40794 1.53874 1.45846 1.48524 1.07715 1.33832 1.21070 0.92249 0.96700 0.86479 1.19642 0.99153 0.89769 0.92986 1.20170 0.90398 1.39430 1.02590 0.90444 1.24959 0.97356 0.94115 0.95877 1.69883 1.06575 1.46333 1.30521 0.86850 0.78748 0.80376 0.83181 1.20329 1.22169 1.18304 1.22839 0.92067 1.01046 1.05675 1.22965 1.00147 1.04285 0.95949 0.92848 0.92622 0.92298 0.90964 0.92201 0.92126 0.91919 0.92637 0.91717 0.92155 0.92737 0.83434 0.91865 0.90587 0.91448 0.76678 0.91728 0.94272 0.92496 0.90926 0.89451 0.89141 0.90751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.21 37.16 0.34 -0.80 16 2 C -0.11 -1.00 5.22 -26.73 -0.14 -1.14 16 3 C 0.11 1.11 0.73 -131.60 -0.10 1.02 16 4 C -0.19 -1.59 7.35 37.16 0.27 -1.32 16 5 C -0.14 -1.52 8.02 37.16 0.30 -1.22 16 6 N -0.66 -8.34 5.54 -94.24 -0.52 -8.86 16 7 C 0.07 0.90 1.93 -68.86 -0.13 0.77 16 8 H 0.09 1.11 4.80 -51.93 -0.25 0.86 16 9 C -0.17 -2.08 8.88 37.16 0.33 -1.75 16 10 C 0.51 9.38 7.10 -10.99 -0.08 9.30 16 11 O -0.54 -11.98 16.49 5.55 0.09 -11.89 16 12 N -0.71 -13.27 5.46 -60.29 -0.33 -13.60 16 13 C 0.16 3.41 5.22 -4.04 -0.02 3.39 16 14 C -0.01 -0.32 0.84 -155.66 -0.13 -0.45 16 15 C -0.49 -12.86 9.34 -34.44 -0.32 -13.18 16 16 H 0.08 2.19 8.06 -52.48 -0.42 1.76 16 17 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 18 N -0.90 -26.60 13.96 55.43 0.77 -25.82 16 19 Si 0.88 21.74 24.70 -169.99 -4.20 17.54 16 20 H -0.28 -6.64 7.02 56.52 0.40 -6.25 16 21 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 22 H -0.26 -6.22 6.08 56.52 0.34 -5.88 16 23 C -0.18 -3.42 9.96 -26.69 -0.27 -3.68 16 24 C -0.20 -4.05 7.55 -26.69 -0.20 -4.25 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.38 6.56 -51.93 -0.34 0.04 16 27 H 0.06 0.44 6.46 -51.93 -0.34 0.10 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.54 5.68 -51.93 -0.30 0.25 16 31 H 0.06 0.48 6.75 -51.93 -0.35 0.13 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.53 6.50 -51.93 -0.34 0.19 16 35 H 0.05 0.62 6.37 -51.93 -0.33 0.29 16 36 H 0.35 4.07 8.06 -39.29 -0.32 3.75 16 37 H 0.06 0.61 7.13 -51.93 -0.37 0.24 16 38 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 40 H 0.40 6.83 8.47 -40.82 -0.35 6.49 16 41 H 0.06 1.57 6.92 -51.93 -0.36 1.21 16 42 H 0.04 0.81 8.09 -51.93 -0.42 0.39 16 43 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 46 H 0.09 1.96 6.99 -51.93 -0.36 1.60 16 47 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 359.65 15.07 5.42 5.42 Total: -1.00 -31.00 359.65 -7.26 -38.27 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -8.26 Total: 10.14 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -0.24 Total: -11.19 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: -0.08 Total: -48.28 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.09 Total: -11.89 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.20 Total: 17.54 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.00 -7.26 -38.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435958892.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.355 kcal (2) G-P(sol) polarization free energy of solvation -31.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds