Wall clock time and date at job start Tue Mar 31 2020 05:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.46799 * 2 1 4 4 C 1.53002 * 109.47716 * 59.99819 * 3 2 1 5 5 C 1.53000 * 109.47268 * 299.99466 * 3 2 1 6 6 N 1.46909 * 109.47001 * 179.97438 * 3 2 1 7 7 C 1.46896 * 110.99768 * 183.08453 * 6 3 2 8 8 H 1.08999 * 109.47859 * 351.06541 * 7 6 3 9 9 C 1.53000 * 109.47175 * 111.06974 * 7 6 3 10 10 C 1.50704 * 109.47211 * 231.06556 * 7 6 3 11 11 O 1.21290 * 119.99629 * 344.57497 * 10 7 6 12 12 N 1.34770 * 120.00354 * 164.56807 * 10 7 6 13 13 C 1.46505 * 120.00115 * 184.57873 * 12 10 7 14 14 C 1.52997 * 109.46964 * 185.03133 * 13 12 10 15 15 C 1.50707 * 115.55055 * 65.76580 * 14 13 12 16 16 H 1.08004 * 119.99516 * 267.52748 * 15 14 13 17 17 C 1.37866 * 119.99975 * 87.52444 * 15 14 13 18 18 N 1.31522 * 120.00055 * 181.29859 * 17 15 14 19 19 Si 1.86802 * 120.00559 * 1.30160 * 17 15 14 20 20 H 1.48498 * 109.47326 * 85.98066 * 19 17 15 21 21 H 1.48498 * 109.47432 * 205.98810 * 19 17 15 22 22 H 1.48503 * 109.46847 * 325.98337 * 19 17 15 23 23 C 1.53000 * 117.50299 * 280.08978 * 14 13 12 24 24 C 1.53001 * 117.49780 * 211.42945 * 14 13 12 25 25 H 1.09004 * 109.47240 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47540 * 300.00072 * 1 2 3 27 27 H 1.09003 * 109.47319 * 60.00230 * 1 2 3 28 28 H 1.08995 * 109.47540 * 239.99928 * 2 1 3 29 29 H 1.09005 * 109.46822 * 119.99635 * 2 1 3 30 30 H 1.08993 * 109.47711 * 174.28822 * 4 3 2 31 31 H 1.09001 * 109.47093 * 294.28960 * 4 3 2 32 32 H 1.09004 * 109.47008 * 54.28791 * 4 3 2 33 33 H 1.08993 * 109.47065 * 301.23422 * 5 3 2 34 34 H 1.08998 * 109.46930 * 61.23677 * 5 3 2 35 35 H 1.09002 * 109.47433 * 181.23183 * 5 3 2 36 36 H 1.00900 * 110.99474 * 307.03736 * 6 3 2 37 37 H 1.08999 * 109.47093 * 294.76684 * 9 7 6 38 38 H 1.09006 * 109.47388 * 174.76692 * 9 7 6 39 39 H 1.08999 * 109.47292 * 54.76619 * 9 7 6 40 40 H 0.96998 * 119.99839 * 4.57873 * 12 10 7 41 41 H 1.08993 * 109.46997 * 305.03148 * 13 12 10 42 42 H 1.09000 * 109.46880 * 65.03183 * 13 12 10 43 43 H 0.97000 * 120.00309 * 179.97438 * 18 17 15 44 44 H 1.09005 * 117.49692 * 0.02562 * 23 14 13 45 45 H 1.08999 * 117.49837 * 145.01892 * 23 14 13 46 46 H 1.08999 * 117.49757 * 214.98060 * 24 14 13 47 47 H 1.09000 * 117.50163 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5299 2.1639 1.2492 5 6 1.5300 2.1637 -1.2493 6 7 3.5090 1.4425 0.0006 7 6 4.0353 2.8120 0.0744 8 1 3.2178 3.5226 -0.0475 9 6 4.7016 3.0297 1.4344 10 6 5.0494 3.0202 -1.0208 11 8 5.5163 2.0649 -1.6044 12 7 5.4372 4.2677 -1.3518 13 6 6.3459 4.4766 -2.4819 14 6 6.7243 5.9567 -2.5650 15 6 7.5379 6.4854 -1.4118 16 1 7.0435 6.9377 -0.5648 17 6 8.9131 6.3915 -1.4381 18 7 9.6218 6.8297 -0.4205 19 14 9.7701 5.6421 -2.9191 20 1 9.9849 6.6898 -3.9494 21 1 11.0806 5.0820 -2.5018 22 1 8.9260 4.5585 -3.4836 23 6 5.7170 6.9082 -3.2137 24 6 7.0053 6.5372 -3.9525 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.9742 3.1577 1.3018 31 1 0.4447 2.2532 1.1995 32 1 1.8073 1.5944 2.1363 33 1 1.8752 1.6373 -2.1390 34 1 0.4402 2.1829 -1.2383 35 1 1.9112 3.1848 -1.2604 36 1 3.8702 0.8752 0.7528 37 1 3.9494 2.9709 2.2211 38 1 5.1729 4.0124 1.4550 39 1 5.4572 2.2609 1.5960 40 1 5.1148 5.0272 -0.8419 41 1 7.2461 3.8789 -2.3396 42 1 5.8520 4.1754 -3.4057 43 1 10.5893 6.7633 -0.4388 44 1 4.7844 6.4798 -3.5810 45 1 5.6429 7.9166 -2.8066 46 1 7.7782 7.3017 -4.0311 47 1 6.9210 5.8646 -4.8060 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435958892.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:45 Heat of formation + Delta-G solvation = -42.898975 kcal Electronic energy + Delta-G solvation = -23394.959609 eV Core-core repulsion = 20191.265255 eV Total energy + Delta-G solvation = -3203.694354 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.00484 -39.47548 -38.53627 -35.12001 -34.79029 -34.19886 -31.04727 -29.43579 -28.52842 -28.16268 -27.17787 -25.30820 -23.82897 -23.31529 -21.19767 -20.69943 -19.86280 -18.61108 -18.05250 -17.04367 -16.92349 -16.65970 -15.85552 -15.69259 -15.54718 -15.27864 -14.81778 -14.74142 -14.56887 -14.28578 -14.08928 -13.79041 -13.53620 -13.27042 -13.13447 -13.10303 -12.97425 -12.73083 -12.66004 -12.21454 -12.15608 -12.11928 -12.01729 -11.99385 -11.58891 -11.57501 -11.30525 -10.99106 -10.79758 -10.64349 -10.30824 -9.81202 -9.26798 -8.30648 -6.36094 1.32107 1.38443 1.48105 1.84145 2.26735 2.35652 3.04864 3.15400 3.34127 3.81581 3.88981 4.03726 4.04917 4.08375 4.15764 4.26591 4.36618 4.42262 4.50435 4.52399 4.56541 4.63656 4.72404 4.73394 4.78339 4.85937 4.87174 4.91134 5.01521 5.09515 5.11150 5.17141 5.19042 5.23431 5.28533 5.32074 5.48832 5.49628 5.52358 5.66392 5.70393 6.10691 6.28185 6.50338 6.71423 6.85280 7.34287 7.49508 8.83948 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027064 B = 0.003990 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.343480 B = 7016.336958 C = 7257.550793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C 0.109 3.891 4 C -0.181 4.181 5 C -0.141 4.141 6 N -0.674 5.674 7 C 0.080 3.920 8 H 0.112 0.888 9 C -0.165 4.165 10 C 0.505 3.495 11 O -0.580 6.580 12 N -0.706 5.706 13 C 0.168 3.832 14 C -0.039 4.039 15 C -0.476 4.476 16 H 0.048 0.952 17 C 0.027 3.973 18 N -0.944 5.944 19 Si 0.929 3.071 20 H -0.262 1.262 21 H -0.304 1.304 22 H -0.250 1.250 23 C -0.149 4.149 24 C -0.197 4.197 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.041 0.959 34 H 0.081 0.919 35 H 0.047 0.953 36 H 0.350 0.650 37 H 0.094 0.906 38 H 0.064 0.936 39 H 0.055 0.945 40 H 0.408 0.592 41 H 0.029 0.971 42 H 0.051 0.949 43 H 0.264 0.736 44 H 0.104 0.896 45 H 0.088 0.912 46 H 0.079 0.921 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.674 -8.871 2.038 21.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.146 4.146 3 C 0.019 3.981 4 C -0.239 4.239 5 C -0.199 4.199 6 N -0.306 5.306 7 C -0.033 4.033 8 H 0.130 0.870 9 C -0.224 4.224 10 C 0.291 3.709 11 O -0.459 6.459 12 N -0.357 5.357 13 C 0.043 3.957 14 C -0.040 4.040 15 C -0.513 4.513 16 H 0.066 0.934 17 C -0.171 4.171 18 N -0.583 5.583 19 Si 0.755 3.245 20 H -0.187 1.187 21 H -0.231 1.231 22 H -0.173 1.173 23 C -0.186 4.186 24 C -0.235 4.235 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.060 0.940 34 H 0.100 0.900 35 H 0.066 0.934 36 H 0.171 0.829 37 H 0.113 0.887 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.243 0.757 41 H 0.048 0.952 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.122 0.878 45 H 0.106 0.894 46 H 0.097 0.903 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -19.124 -9.573 0.984 21.409 hybrid contribution 1.120 0.430 0.589 1.337 sum -18.004 -9.143 1.573 20.254 Atomic orbital electron populations 1.21847 0.94094 1.02205 1.02522 1.21486 0.96838 0.94328 1.01978 1.21091 0.85487 0.96384 0.95132 1.22669 1.02909 1.00755 0.97616 1.21968 1.01551 0.99440 0.96913 1.60072 1.07642 1.09657 1.53256 1.21356 0.96058 0.93283 0.92647 0.87033 1.22317 1.01804 1.02994 0.95264 1.21487 0.82812 0.82048 0.84518 1.90604 1.57622 1.42000 1.55676 1.45852 1.47965 1.08492 1.33399 1.20784 0.91545 0.95428 0.87934 1.19455 1.01330 0.90593 0.92610 1.20358 0.90470 1.37566 1.02934 0.93431 1.25670 0.98404 0.94990 0.98057 1.70007 1.06709 1.48973 1.32658 0.86062 0.77383 0.80219 0.80855 1.18712 1.23148 1.17348 1.22876 0.92506 1.00153 1.03035 1.23031 1.00850 1.04114 0.95479 0.92198 0.91529 0.92303 0.92856 0.91600 0.92283 0.90528 0.91814 0.93977 0.90033 0.93408 0.82942 0.88695 0.91742 0.92579 0.75714 0.95240 0.93062 0.92716 0.87821 0.89383 0.90291 0.88538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.21 71.98 0.66 -1.17 16 2 C -0.11 -1.78 5.22 30.59 0.16 -1.62 16 3 C 0.11 2.00 0.73 3.52 0.00 2.00 16 4 C -0.18 -2.52 7.35 71.98 0.53 -1.99 16 5 C -0.14 -2.78 8.02 71.98 0.58 -2.20 16 6 N -0.67 -16.36 5.54 -452.08 -2.51 -18.86 16 7 C 0.08 2.06 1.93 44.17 0.09 2.14 16 8 H 0.11 2.44 4.80 -2.39 -0.01 2.43 16 9 C -0.17 -3.79 8.88 71.98 0.64 -3.16 16 10 C 0.50 18.41 7.10 87.66 0.62 19.04 16 11 O -0.58 -26.26 16.49 -3.06 -0.05 -26.31 16 12 N -0.71 -26.09 5.46 -463.06 -2.53 -28.62 16 13 C 0.17 7.08 5.22 86.38 0.45 7.53 16 14 C -0.04 -1.66 0.84 -52.93 -0.04 -1.71 16 15 C -0.48 -25.28 9.34 25.60 0.24 -25.04 16 16 H 0.05 2.75 8.06 -2.91 -0.02 2.73 16 17 C 0.03 1.52 5.47 84.65 0.46 1.98 16 18 N -0.94 -57.63 13.96 21.44 0.30 -57.33 16 19 Si 0.93 45.04 24.70 68.60 1.69 46.74 16 20 H -0.26 -11.97 7.02 99.48 0.70 -11.27 16 21 H -0.30 -15.09 7.11 99.48 0.71 -14.38 16 22 H -0.25 -11.65 6.08 99.48 0.60 -11.05 16 23 C -0.15 -5.24 9.96 30.62 0.30 -4.94 16 24 C -0.20 -7.65 7.55 30.62 0.23 -7.42 16 25 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 26 H 0.07 0.69 6.56 -2.39 -0.02 0.67 16 27 H 0.06 0.73 6.46 -2.39 -0.02 0.71 16 28 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.06 0.85 5.68 -2.39 -0.01 0.84 16 31 H 0.08 0.88 6.75 -2.39 -0.02 0.86 16 32 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.08 1.23 6.50 -2.39 -0.02 1.21 16 35 H 0.05 0.99 6.37 -2.39 -0.02 0.97 16 36 H 0.35 7.83 8.06 -89.69 -0.72 7.11 16 37 H 0.09 1.58 7.13 -2.39 -0.02 1.57 16 38 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 39 H 0.06 1.41 8.08 -2.39 -0.02 1.40 16 40 H 0.41 13.62 8.47 -92.71 -0.79 12.83 16 41 H 0.03 1.44 6.92 -2.39 -0.02 1.42 16 42 H 0.05 2.04 8.09 -2.39 -0.02 2.02 16 43 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 44 H 0.10 3.06 8.14 -2.38 -0.02 3.04 16 45 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 46 H 0.08 3.26 6.99 -2.39 -0.02 3.25 16 47 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 Total: -1.00 -68.66 359.65 1.17 -67.49 By element: Atomic # 1 Polarization: 34.11 SS G_CDS: -0.66 Total: 33.45 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: 4.92 Total: -16.56 kcal Atomic # 7 Polarization: -100.07 SS G_CDS: -4.74 Total: -104.81 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.05 Total: -26.31 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.69 Total: 46.74 kcal Total: -68.66 1.17 -67.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435958892.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.591 kcal (2) G-P(sol) polarization free energy of solvation -68.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds