Wall clock time and date at job start Tue Mar 31 2020 06:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47080 * 2 1 4 4 C 1.53005 * 109.47013 * 119.99997 * 2 1 3 5 5 H 1.09000 * 109.52388 * 299.91893 * 4 2 1 6 6 C 1.53044 * 109.49534 * 179.83673 * 4 2 1 7 7 C 1.53040 * 109.53621 * 178.68181 * 6 4 2 8 8 C 1.53199 * 109.30917 * 61.36978 * 7 6 4 9 9 N 1.46924 * 108.77462 * 305.36210 * 8 7 6 10 10 C 1.34775 * 120.63242 * 233.58898 * 9 8 7 11 11 O 1.21583 * 120.00427 * 174.79155 * 10 9 8 12 12 N 1.34780 * 120.00043 * 354.79375 * 10 9 8 13 13 C 1.46504 * 120.00372 * 184.98117 * 12 10 9 14 14 C 1.52998 * 109.47240 * 180.02562 * 13 12 10 15 15 C 1.52994 * 109.47193 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47256 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00043 * 359.97438 * 16 15 14 18 18 C 1.37869 * 119.99974 * 180.02562 * 16 15 14 19 19 N 1.31518 * 120.00354 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99947 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46906 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47089 * 119.99845 * 20 18 16 23 23 H 1.48503 * 109.47265 * 239.99350 * 20 18 16 24 24 C 1.46928 * 118.74015 * 53.61071 * 9 8 7 25 25 H 1.09000 * 109.47198 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47622 * 299.99706 * 1 2 3 27 27 H 1.09001 * 109.47521 * 60.00223 * 1 2 3 28 28 H 1.09001 * 109.47376 * 239.99834 * 2 1 3 29 29 H 1.09000 * 109.47381 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47435 * 300.00179 * 3 2 1 31 31 H 1.09005 * 109.47086 * 60.00206 * 3 2 1 32 32 H 1.08999 * 109.45953 * 298.70435 * 6 4 2 33 33 H 1.08996 * 109.46039 * 58.67869 * 6 4 2 34 34 H 1.08998 * 109.49723 * 181.31908 * 7 6 4 35 35 H 1.08999 * 109.49917 * 301.41853 * 7 6 4 36 36 H 1.08998 * 109.58674 * 65.15262 * 8 7 6 37 37 H 1.09005 * 109.58518 * 185.57903 * 8 7 6 38 38 H 0.97006 * 119.99685 * 4.98645 * 12 10 9 39 39 H 1.08995 * 109.46968 * 300.00056 * 13 12 10 40 40 H 1.09004 * 109.46712 * 60.00002 * 13 12 10 41 41 H 1.09000 * 109.47031 * 300.00622 * 14 13 12 42 42 H 1.08997 * 109.46974 * 59.99730 * 14 13 12 43 43 H 1.08991 * 109.47553 * 300.00281 * 15 14 13 44 44 H 1.09004 * 109.46636 * 60.00077 * 15 14 13 45 45 H 0.96997 * 120.00234 * 180.02562 * 19 18 16 46 46 H 1.09005 * 109.58793 * 186.60160 * 24 9 8 47 47 H 1.08997 * 109.58538 * 66.17964 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6783 -0.2073 2.1398 6 6 3.5704 -0.7252 1.2478 7 6 4.0816 -1.4175 2.5133 8 6 3.5944 -2.8699 2.5282 9 7 2.1324 -2.8797 2.3837 10 6 1.3587 -3.5317 3.2741 11 8 0.1477 -3.4543 3.1988 12 7 1.9274 -4.2695 4.2481 13 6 1.0893 -5.0653 5.1484 14 6 1.9769 -5.8012 6.1542 15 6 1.1016 -6.6317 7.0948 16 6 1.9758 -7.3561 8.0858 17 1 3.0485 -7.2364 8.0482 18 6 1.4063 -8.1724 9.0398 19 7 0.1000 -8.3186 9.0853 20 14 2.4900 -9.0709 10.2678 21 1 3.9139 -8.7410 10.0055 22 1 2.1298 -8.6510 11.6459 23 1 2.2877 -10.5354 10.1278 24 6 1.5297 -2.1657 1.2498 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 3.1299 1.4425 0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 3.9313 -1.2608 0.3698 33 1 3.9361 0.3013 1.2228 34 1 5.1714 -1.3992 2.5230 35 1 3.7007 -0.8970 3.3920 36 1 4.0472 -3.4156 1.7003 37 1 3.8714 -3.3386 3.4725 38 1 2.8918 -4.2735 4.3531 39 1 0.4037 -4.4076 5.6826 40 1 0.5191 -5.7904 4.5678 41 1 2.6630 -6.4587 5.6203 42 1 2.5468 -5.0758 6.7347 43 1 0.4159 -5.9739 7.6286 44 1 0.5314 -7.3571 6.5145 45 1 -0.3007 -8.8927 9.7567 46 1 0.4443 -2.1698 1.3506 47 1 1.8139 -2.6541 0.3177 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435969329.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:30 Heat of formation + Delta-G solvation = -63.040888 kcal Electronic energy + Delta-G solvation = -22466.618076 eV Core-core repulsion = 19262.050303 eV Total energy + Delta-G solvation = -3204.567773 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.47459 -38.41971 -35.61938 -35.36506 -33.28686 -32.46512 -31.21206 -29.94216 -27.77058 -26.71930 -25.01167 -23.84835 -22.77831 -21.46325 -20.58779 -20.07008 -19.35851 -17.99843 -16.49409 -16.02031 -15.82134 -15.14980 -14.83808 -14.61433 -14.42125 -14.25980 -14.09847 -14.02063 -13.62350 -13.22301 -13.14739 -12.70545 -12.35671 -12.27957 -11.88006 -11.78037 -11.67322 -11.63446 -11.43199 -11.18173 -10.92480 -10.88134 -10.71947 -10.61238 -10.54670 -10.42436 -9.97217 -9.84356 -9.42174 -9.09586 -8.88979 -8.41519 -8.36242 -6.00678 -4.03672 2.74160 3.30523 3.36924 3.37960 3.41464 4.01417 4.35390 4.43412 4.45423 4.53739 4.68542 4.78748 4.87883 5.06682 5.15984 5.22007 5.27588 5.35097 5.38069 5.45151 5.50734 5.56705 5.60244 5.63961 5.67668 5.74583 5.75579 5.82908 5.84455 5.87486 5.98446 6.09370 6.19369 6.21450 6.46411 6.58479 6.64984 6.84835 7.05004 7.08106 7.65710 7.78581 7.98523 8.11946 8.39464 8.78241 9.03296 9.60442 11.10671 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038693 B = 0.002613 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.478323 B =10712.067356 C =11223.707847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.088 4.088 3 C -0.148 4.148 4 C -0.098 4.098 5 H 0.075 0.925 6 C -0.115 4.115 7 C -0.136 4.136 8 C 0.111 3.889 9 N -0.634 5.634 10 C 0.704 3.296 11 O -0.592 6.592 12 N -0.743 5.743 13 C 0.134 3.866 14 C -0.120 4.120 15 C 0.024 3.976 16 C -0.521 4.521 17 H 0.056 0.944 18 C 0.056 3.944 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.133 3.867 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.392 0.608 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.019 0.981 44 H 0.019 0.981 45 H 0.260 0.740 46 H 0.096 0.904 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.223 17.863 -19.559 27.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.107 4.107 3 C -0.205 4.205 4 C -0.118 4.118 5 H 0.093 0.907 6 C -0.152 4.152 7 C -0.174 4.174 8 C -0.013 4.013 9 N -0.372 5.372 10 C 0.405 3.595 11 O -0.470 6.470 12 N -0.399 5.399 13 C 0.011 3.989 14 C -0.158 4.158 15 C -0.014 4.014 16 C -0.559 4.559 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 C 0.010 3.990 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.228 0.772 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.038 0.962 44 H 0.038 0.962 45 H 0.070 0.930 46 H 0.114 0.886 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.166 17.777 -19.492 27.337 hybrid contribution 1.075 -0.550 0.835 1.468 sum 8.241 17.227 -18.657 26.698 Atomic orbital electron populations 1.21914 0.94987 1.02296 1.01764 1.21081 0.95973 0.96119 0.97573 1.21883 1.01051 0.95865 1.01721 1.21613 0.95559 0.95906 0.98698 0.90684 1.21624 0.95092 1.00821 0.97711 1.21931 1.00741 0.95736 0.98993 1.21613 0.80559 0.97100 1.02004 1.47264 1.05910 1.55826 1.28174 1.15921 0.85186 0.78811 0.79549 1.90895 1.12158 1.67995 1.75975 1.45570 1.10433 1.49887 1.34003 1.21510 0.93493 0.93315 0.90599 1.21882 0.98811 0.98563 0.96528 1.19031 0.94772 0.94352 0.93248 1.21240 0.93275 1.27048 1.14353 0.92617 1.25036 0.94969 0.96802 0.97728 1.69979 1.09505 1.38679 1.35110 0.86529 0.80704 0.79529 0.81174 1.19780 1.21006 1.21013 1.21529 0.99872 0.90276 0.87312 0.92131 0.92533 0.92787 0.91132 0.92436 0.92796 0.92699 0.91823 0.91393 0.90710 0.91399 0.91449 0.90352 0.77181 0.91938 0.92047 0.92827 0.92831 0.96224 0.96240 0.92989 0.88606 0.92138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 8.84 37.16 0.33 -0.84 16 2 C -0.09 -0.62 2.51 -90.62 -0.23 -0.85 16 3 C -0.15 -0.92 8.85 37.15 0.33 -0.59 16 4 C -0.10 -0.83 1.92 -90.49 -0.17 -1.00 16 5 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 6 C -0.12 -0.80 4.85 -26.69 -0.13 -0.93 16 7 C -0.14 -1.00 6.08 -26.61 -0.16 -1.16 16 8 C 0.11 0.98 6.39 -3.71 -0.02 0.96 16 9 N -0.63 -7.76 2.97 -178.49 -0.53 -8.29 16 10 C 0.70 11.54 8.29 -86.92 -0.72 10.82 16 11 O -0.59 -12.08 15.77 5.29 0.08 -12.00 16 12 N -0.74 -11.52 5.47 -65.22 -0.36 -11.88 16 13 C 0.13 2.48 5.68 -4.04 -0.02 2.45 16 14 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 15 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 16 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 17 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.89 -27.00 13.29 55.43 0.74 -26.27 16 20 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 C 0.13 1.43 5.20 -3.71 -0.02 1.41 16 25 H 0.06 0.51 6.56 -51.93 -0.34 0.17 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.32 6.40 -51.93 -0.33 -0.01 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.42 6.37 -51.93 -0.33 0.09 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.66 5.65 -51.93 -0.29 0.37 16 38 H 0.39 4.99 5.96 -40.82 -0.24 4.75 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 46 H 0.10 1.23 5.61 -51.93 -0.29 0.94 16 47 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 362.79 15.07 5.47 5.47 Total: -1.00 -32.71 362.79 -9.69 -42.40 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -8.56 Total: -0.76 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: -1.51 Total: -5.24 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: -0.15 Total: -46.43 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.08 Total: -12.00 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.71 -9.69 -42.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435969329.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.639 kcal (2) G-P(sol) polarization free energy of solvation -32.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds