Wall clock time and date at job start Tue Mar 31 2020 06:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47080 * 2 1 4 4 C 1.53005 * 109.47013 * 119.99997 * 2 1 3 5 5 H 1.09000 * 109.52388 * 299.91893 * 4 2 1 6 6 C 1.53044 * 109.49534 * 179.83673 * 4 2 1 7 7 C 1.53040 * 109.53621 * 178.68181 * 6 4 2 8 8 C 1.53199 * 109.30917 * 61.36978 * 7 6 4 9 9 N 1.46924 * 108.77462 * 305.36210 * 8 7 6 10 10 C 1.34775 * 120.63242 * 233.58898 * 9 8 7 11 11 O 1.21583 * 120.00427 * 174.79155 * 10 9 8 12 12 N 1.34780 * 120.00043 * 354.79375 * 10 9 8 13 13 C 1.46504 * 120.00372 * 184.98117 * 12 10 9 14 14 C 1.52998 * 109.47240 * 180.02562 * 13 12 10 15 15 C 1.52994 * 109.47193 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47256 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00043 * 359.97438 * 16 15 14 18 18 C 1.37869 * 119.99974 * 180.02562 * 16 15 14 19 19 N 1.31518 * 120.00354 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99947 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46906 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47089 * 119.99845 * 20 18 16 23 23 H 1.48503 * 109.47265 * 239.99350 * 20 18 16 24 24 C 1.46928 * 118.74015 * 53.61071 * 9 8 7 25 25 H 1.09000 * 109.47198 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47622 * 299.99706 * 1 2 3 27 27 H 1.09001 * 109.47521 * 60.00223 * 1 2 3 28 28 H 1.09001 * 109.47376 * 239.99834 * 2 1 3 29 29 H 1.09000 * 109.47381 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47435 * 300.00179 * 3 2 1 31 31 H 1.09005 * 109.47086 * 60.00206 * 3 2 1 32 32 H 1.08999 * 109.45953 * 298.70435 * 6 4 2 33 33 H 1.08996 * 109.46039 * 58.67869 * 6 4 2 34 34 H 1.08998 * 109.49723 * 181.31908 * 7 6 4 35 35 H 1.08999 * 109.49917 * 301.41853 * 7 6 4 36 36 H 1.08998 * 109.58674 * 65.15262 * 8 7 6 37 37 H 1.09005 * 109.58518 * 185.57903 * 8 7 6 38 38 H 0.97006 * 119.99685 * 4.98645 * 12 10 9 39 39 H 1.08995 * 109.46968 * 300.00056 * 13 12 10 40 40 H 1.09004 * 109.46712 * 60.00002 * 13 12 10 41 41 H 1.09000 * 109.47031 * 300.00622 * 14 13 12 42 42 H 1.08997 * 109.46974 * 59.99730 * 14 13 12 43 43 H 1.08991 * 109.47553 * 300.00281 * 15 14 13 44 44 H 1.09004 * 109.46636 * 60.00077 * 15 14 13 45 45 H 0.96997 * 120.00234 * 180.02562 * 19 18 16 46 46 H 1.09005 * 109.58793 * 186.60160 * 24 9 8 47 47 H 1.08997 * 109.58538 * 66.17964 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6783 -0.2073 2.1398 6 6 3.5704 -0.7252 1.2478 7 6 4.0816 -1.4175 2.5133 8 6 3.5944 -2.8699 2.5282 9 7 2.1324 -2.8797 2.3837 10 6 1.3587 -3.5317 3.2741 11 8 0.1477 -3.4543 3.1988 12 7 1.9274 -4.2695 4.2481 13 6 1.0893 -5.0653 5.1484 14 6 1.9769 -5.8012 6.1542 15 6 1.1016 -6.6317 7.0948 16 6 1.9758 -7.3561 8.0858 17 1 3.0485 -7.2364 8.0482 18 6 1.4063 -8.1724 9.0398 19 7 0.1000 -8.3186 9.0853 20 14 2.4900 -9.0709 10.2678 21 1 3.9139 -8.7410 10.0055 22 1 2.1298 -8.6510 11.6459 23 1 2.2877 -10.5354 10.1278 24 6 1.5297 -2.1657 1.2498 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 3.1299 1.4425 0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 3.9313 -1.2608 0.3698 33 1 3.9361 0.3013 1.2228 34 1 5.1714 -1.3992 2.5230 35 1 3.7007 -0.8970 3.3920 36 1 4.0472 -3.4156 1.7003 37 1 3.8714 -3.3386 3.4725 38 1 2.8918 -4.2735 4.3531 39 1 0.4037 -4.4076 5.6826 40 1 0.5191 -5.7904 4.5678 41 1 2.6630 -6.4587 5.6203 42 1 2.5468 -5.0758 6.7347 43 1 0.4159 -5.9739 7.6286 44 1 0.5314 -7.3571 6.5145 45 1 -0.3007 -8.8927 9.7567 46 1 0.4443 -2.1698 1.3506 47 1 1.8139 -2.6541 0.3177 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435969329.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:28 Heat of formation + Delta-G solvation = -82.417570 kcal Electronic energy + Delta-G solvation = -22467.458312 eV Core-core repulsion = 19262.050303 eV Total energy + Delta-G solvation = -3205.408009 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -41.54970 -39.36532 -36.99016 -36.43242 -35.17580 -33.41252 -32.83144 -30.80987 -28.69036 -28.18430 -26.04900 -24.95563 -24.14142 -22.34964 -22.25482 -20.75935 -20.47720 -19.12267 -18.46969 -17.34713 -16.95615 -16.48962 -16.19432 -15.64906 -15.56339 -15.39722 -15.02137 -14.87099 -14.55694 -14.25593 -14.20707 -13.84610 -13.73686 -13.49392 -13.32575 -12.93960 -12.77732 -12.56845 -12.50921 -12.34551 -12.27036 -12.10015 -11.75761 -11.69108 -11.61973 -11.51950 -11.36640 -11.22349 -11.08018 -11.02240 -10.56144 -10.24369 -9.46150 -8.19323 -6.30937 1.41934 1.42271 1.55429 1.62441 2.08547 2.42022 2.94183 3.14447 3.69936 3.77660 3.88731 4.06187 4.12673 4.18308 4.21536 4.24846 4.39323 4.45490 4.54328 4.60358 4.63919 4.79484 4.82805 4.84879 4.93429 4.94433 4.97621 5.02127 5.02735 5.10897 5.13118 5.16251 5.21572 5.27912 5.39982 5.45770 5.51393 5.52845 5.57141 5.62561 5.70390 5.84082 5.92838 6.22397 6.86206 6.95377 7.38667 7.52415 8.93149 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038693 B = 0.002613 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.478323 B =10712.067356 C =11223.707847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.084 4.084 3 C -0.145 4.145 4 C -0.090 4.090 5 H 0.052 0.948 6 C -0.111 4.111 7 C -0.131 4.131 8 C 0.102 3.898 9 N -0.626 5.626 10 C 0.697 3.303 11 O -0.641 6.641 12 N -0.732 5.732 13 C 0.149 3.851 14 C -0.099 4.099 15 C 0.024 3.976 16 C -0.539 4.539 17 H 0.067 0.933 18 C -0.005 4.005 19 N -0.936 5.936 20 Si 0.969 3.031 21 H -0.257 1.257 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.129 3.871 25 H 0.047 0.953 26 H 0.043 0.957 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.046 0.954 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.052 0.948 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.409 0.591 39 H 0.044 0.956 40 H 0.046 0.954 41 H 0.069 0.931 42 H 0.067 0.933 43 H -0.009 1.009 44 H -0.008 1.008 45 H 0.263 0.737 46 H 0.067 0.933 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.591 18.502 -20.516 29.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.103 4.103 3 C -0.202 4.202 4 C -0.110 4.110 5 H 0.071 0.929 6 C -0.149 4.149 7 C -0.170 4.170 8 C -0.020 4.020 9 N -0.363 5.363 10 C 0.398 3.602 11 O -0.523 6.523 12 N -0.390 5.390 13 C 0.024 3.976 14 C -0.137 4.137 15 C -0.014 4.014 16 C -0.577 4.577 17 H 0.086 0.914 18 C -0.203 4.203 19 N -0.576 5.576 20 Si 0.793 3.207 21 H -0.181 1.181 22 H -0.206 1.206 23 H -0.206 1.206 24 C 0.007 3.993 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.084 0.916 28 H 0.101 0.899 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.119 0.881 35 H 0.071 0.929 36 H 0.107 0.893 37 H 0.101 0.899 38 H 0.248 0.752 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.010 0.990 44 H 0.011 0.989 45 H 0.072 0.928 46 H 0.085 0.915 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.607 18.448 -20.481 29.535 hybrid contribution -0.010 -0.714 1.076 1.291 sum 10.597 17.734 -19.405 28.343 Atomic orbital electron populations 1.21921 0.95944 1.01474 1.01722 1.21068 0.95149 0.96847 0.97237 1.21860 1.01735 0.94902 1.01722 1.21531 0.97026 0.93946 0.98500 0.92901 1.21631 0.93316 1.01867 0.98053 1.21924 1.02195 0.94241 0.98607 1.21948 0.78089 0.98762 1.03162 1.47362 1.07324 1.54451 1.27178 1.16134 0.84885 0.79101 0.80084 1.90862 1.14529 1.69673 1.77225 1.45231 1.10919 1.49388 1.33426 1.21083 0.93218 0.92825 0.90434 1.21578 0.97977 0.98307 0.95828 1.18942 0.94853 0.93948 0.93672 1.21698 0.94077 1.27125 1.14762 0.91440 1.26050 0.96383 0.97816 1.00020 1.70126 1.11640 1.39667 1.36200 0.85342 0.79255 0.77941 0.78143 1.18102 1.20605 1.20577 1.21666 0.98429 0.91951 0.87304 0.93380 0.93779 0.91607 0.89872 0.91266 0.92037 0.93513 0.90364 0.90061 0.88119 0.92878 0.89312 0.89909 0.75240 0.93782 0.93537 0.91259 0.91439 0.99025 0.98927 0.92819 0.91474 0.90365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 8.84 71.98 0.64 -1.72 16 2 C -0.08 -1.06 2.51 -10.80 -0.03 -1.09 16 3 C -0.15 -1.50 8.85 71.98 0.64 -0.86 16 4 C -0.09 -1.42 1.92 -10.71 -0.02 -1.44 16 5 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 6 C -0.11 -1.20 4.85 30.62 0.15 -1.05 16 7 C -0.13 -1.55 6.08 30.67 0.19 -1.36 16 8 C 0.10 1.55 6.39 86.37 0.55 2.10 16 9 N -0.63 -14.83 2.97 -836.89 -2.49 -17.31 16 10 C 0.70 23.08 8.29 179.05 1.49 24.56 16 11 O -0.64 -27.35 15.77 -3.98 -0.06 -27.41 16 12 N -0.73 -22.40 5.47 -478.53 -2.62 -25.02 16 13 C 0.15 5.62 5.68 86.38 0.49 6.11 16 14 C -0.10 -3.91 5.27 30.59 0.16 -3.75 16 15 C 0.02 1.25 4.97 29.85 0.15 1.40 16 16 C -0.54 -30.28 9.11 25.60 0.23 -30.04 16 17 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 18 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 19 N -0.94 -57.73 13.29 21.44 0.28 -57.44 16 20 Si 0.97 44.00 29.54 68.60 2.03 46.03 16 21 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 22 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 23 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 24 C 0.13 2.71 5.20 86.36 0.45 3.16 16 25 H 0.05 0.85 6.56 -2.39 -0.02 0.83 16 26 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.07 0.56 6.40 -2.39 -0.02 0.55 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.08 0.72 6.37 -2.39 -0.02 0.70 16 34 H 0.10 0.73 8.14 -2.39 -0.02 0.72 16 35 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.09 1.03 8.14 -2.39 -0.02 1.02 16 37 H 0.08 1.17 5.65 -2.38 -0.01 1.16 16 38 H 0.41 9.67 5.96 -92.70 -0.55 9.12 16 39 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 42 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 43 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 44 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 45 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 46 H 0.07 1.82 5.61 -2.38 -0.01 1.81 16 47 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -72.92 362.79 3.06 -69.86 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.37 Total: 15.13 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: 5.54 Total: -3.83 kcal Atomic # 7 Polarization: -94.95 SS G_CDS: -4.82 Total: -99.77 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.06 Total: -27.41 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -72.92 3.06 -69.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435969329.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.558 kcal (2) G-P(sol) polarization free energy of solvation -72.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds