Wall clock time and date at job start Tue Mar 31 2020 06:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 109.46738 * 2 1 4 4 C 1.52996 * 109.47012 * 120.00326 * 2 1 3 5 5 H 1.09005 * 109.52134 * 300.08122 * 4 2 1 6 6 C 1.53034 * 109.50095 * 60.15803 * 4 2 1 7 7 C 1.53039 * 109.53954 * 181.31642 * 6 4 2 8 8 C 1.53627 * 109.24113 * 298.51423 * 7 6 4 9 9 N 1.46926 * 108.54334 * 54.85618 * 8 7 6 10 10 C 1.34776 * 120.62780 * 126.36794 * 9 8 7 11 11 O 1.21587 * 119.99875 * 184.94263 * 10 9 8 12 12 N 1.34768 * 120.00394 * 4.94417 * 10 9 8 13 13 C 1.46504 * 120.00355 * 175.29057 * 12 10 9 14 14 C 1.52999 * 109.47036 * 179.72227 * 13 12 10 15 15 C 1.53005 * 109.46820 * 180.02562 * 14 13 12 16 16 C 1.50704 * 109.47082 * 179.97438 * 15 14 13 17 17 H 1.07992 * 119.99743 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99688 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00250 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99678 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47379 * 59.99750 * 20 18 16 22 22 H 1.48501 * 109.47081 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.46766 * 299.99876 * 20 18 16 24 24 C 1.46920 * 118.73776 * 306.09310 * 9 8 7 25 25 H 1.09000 * 109.47019 * 59.99773 * 1 2 3 26 26 H 1.08994 * 109.47052 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47181 * 299.99952 * 1 2 3 28 28 H 1.08998 * 109.46766 * 240.00319 * 2 1 3 29 29 H 1.09010 * 109.46732 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47550 * 299.99902 * 3 2 1 31 31 H 1.08998 * 109.47231 * 60.00604 * 3 2 1 32 32 H 1.08996 * 109.46391 * 301.34162 * 6 4 2 33 33 H 1.09005 * 109.45804 * 61.30910 * 6 4 2 34 34 H 1.08998 * 109.49559 * 58.58858 * 7 6 4 35 35 H 1.09004 * 109.49859 * 178.65437 * 7 6 4 36 36 H 1.09003 * 109.73812 * 295.11827 * 8 7 6 37 37 H 1.08999 * 109.66248 * 174.55383 * 8 7 6 38 38 H 0.97009 * 119.99881 * 355.01030 * 12 10 9 39 39 H 1.08997 * 109.47040 * 299.72418 * 13 12 10 40 40 H 1.08997 * 109.46669 * 59.72363 * 13 12 10 41 41 H 1.09005 * 109.47208 * 299.99717 * 14 13 12 42 42 H 1.08997 * 109.47281 * 60.00510 * 14 13 12 43 43 H 1.08997 * 109.47063 * 300.00073 * 15 14 13 44 44 H 1.09003 * 109.47026 * 59.99729 * 15 14 13 45 45 H 0.96997 * 119.99926 * 180.02562 * 19 18 16 46 46 H 1.08997 * 109.58985 * 173.64812 * 24 9 8 47 47 H 1.08998 * 109.58880 * 293.93154 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6759 -0.2090 2.1398 6 6 1.5335 -2.1654 1.2478 7 6 2.0159 -2.8782 2.5132 8 6 3.5519 -2.9049 2.5250 9 7 4.0442 -1.5278 2.3837 10 6 4.9168 -1.0158 3.2742 11 8 5.2476 0.1517 3.1988 12 7 5.4226 -1.7979 4.2482 13 6 6.4480 -1.2711 5.1523 14 6 6.8422 -2.3517 6.1612 15 6 7.9126 -1.8013 7.1058 16 6 8.3005 -2.8654 8.1000 17 1 7.8309 -3.8371 8.0616 18 6 9.2557 -2.5986 9.0578 19 7 9.8280 -1.4154 9.1042 20 14 9.7370 -3.9178 10.2897 21 1 10.2742 -5.0983 9.5663 22 1 10.7758 -3.3836 11.2065 23 1 8.5431 -4.3201 11.0758 24 6 3.5720 -0.7216 1.2499 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.1301 1.4426 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 0.4439 -2.1681 1.2225 33 1 1.9184 -2.6843 0.3698 34 1 1.6521 -2.3456 3.3919 35 1 1.6349 -3.8995 2.5232 36 1 3.9159 -3.5101 1.6947 37 1 3.9042 -3.3241 3.4674 38 1 5.1049 -2.7085 4.3532 39 1 7.3242 -0.9758 4.5752 40 1 6.0537 -0.4048 5.6833 41 1 5.9659 -2.6470 6.7383 42 1 7.2365 -3.2181 5.6302 43 1 8.7889 -1.5056 6.5290 44 1 7.5179 -0.9350 7.6368 45 1 10.5002 -1.2278 9.7778 46 1 3.9375 0.3003 1.3506 47 1 3.9397 -1.1510 0.3179 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435969330.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:35 Heat of formation + Delta-G solvation = -62.909203 kcal Electronic energy + Delta-G solvation = -22466.075351 eV Core-core repulsion = 19261.513288 eV Total energy + Delta-G solvation = -3204.562063 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.46860 -38.41574 -35.61053 -35.36169 -33.28423 -32.45599 -31.20884 -29.93300 -27.76605 -26.71724 -25.00824 -23.85105 -22.77490 -21.46227 -20.58637 -20.06856 -19.36026 -17.99843 -16.49055 -16.01571 -15.82010 -15.14883 -14.83227 -14.61410 -14.42676 -14.25793 -14.09585 -14.01834 -13.61897 -13.21407 -13.14610 -12.70473 -12.35624 -12.26269 -11.88245 -11.78645 -11.67145 -11.63164 -11.43469 -11.18252 -10.90575 -10.86111 -10.71587 -10.62345 -10.58453 -10.42306 -9.97027 -9.83586 -9.41507 -9.11934 -8.88930 -8.41426 -8.35414 -6.00173 -4.03325 2.74277 3.32817 3.37067 3.37553 3.39435 4.01431 4.35507 4.43505 4.45616 4.53841 4.68193 4.78907 4.87537 5.06910 5.15817 5.21905 5.27471 5.35349 5.38079 5.45145 5.50724 5.56791 5.60414 5.63959 5.67755 5.74554 5.75710 5.83004 5.84533 5.87561 5.98498 6.09428 6.19461 6.21482 6.46452 6.58507 6.65072 6.84813 7.05046 7.08144 7.65430 7.78801 7.98758 8.12005 8.39681 8.78306 9.03161 9.60574 11.11101 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038617 B = 0.002614 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.899282 B =10709.686268 C =11219.828036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 C -0.152 4.152 4 C -0.098 4.098 5 H 0.075 0.925 6 C -0.115 4.115 7 C -0.135 4.135 8 C 0.111 3.889 9 N -0.634 5.634 10 C 0.704 3.296 11 O -0.592 6.592 12 N -0.743 5.743 13 C 0.134 3.866 14 C -0.120 4.120 15 C 0.024 3.976 16 C -0.523 4.523 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.133 3.867 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.392 0.608 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.019 0.981 44 H 0.019 0.981 45 H 0.262 0.738 46 H 0.096 0.904 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.500 -1.811 -19.589 27.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.107 4.107 3 C -0.210 4.210 4 C -0.117 4.117 5 H 0.093 0.907 6 C -0.153 4.153 7 C -0.174 4.174 8 C -0.013 4.013 9 N -0.372 5.372 10 C 0.405 3.595 11 O -0.470 6.470 12 N -0.399 5.399 13 C 0.011 3.989 14 C -0.158 4.158 15 C -0.013 4.013 16 C -0.561 4.561 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C 0.010 3.990 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.228 0.772 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.037 0.963 44 H 0.038 0.962 45 H 0.071 0.929 46 H 0.114 0.886 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -19.061 -0.834 -19.518 27.294 hybrid contribution 0.145 -1.216 0.829 1.479 sum -18.917 -2.051 -18.689 26.670 Atomic orbital electron populations 1.21884 0.95170 1.01744 1.01721 1.21083 0.95789 0.96302 0.97575 1.21917 1.01566 0.95717 1.01764 1.21606 0.95410 0.96037 0.98695 0.90680 1.21623 1.00767 0.95141 0.97720 1.22001 0.95243 1.01145 0.98978 1.21703 0.94330 0.83254 1.02005 1.47264 1.47491 1.14221 1.28208 1.15921 0.79118 0.84859 0.79580 1.90896 1.64784 1.15352 1.76002 1.45569 1.44205 1.16249 1.33865 1.21510 0.89059 0.97843 0.90505 1.21886 1.00621 0.96783 0.96502 1.19023 0.92589 0.96531 0.93185 1.21167 1.21860 0.98851 1.14212 0.92722 1.25033 0.96256 0.95479 0.97716 1.69957 1.27232 1.21016 1.35067 0.86641 0.78201 0.81905 0.81125 1.20257 1.21278 1.20261 1.21522 0.92922 0.97238 0.87308 0.92803 0.92437 0.92693 0.91133 0.92132 0.92781 0.92538 0.91395 0.91830 0.91381 0.90748 0.91419 0.90343 0.77180 0.92044 0.91937 0.92834 0.92825 0.96250 0.96239 0.92873 0.88624 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 8.85 37.16 0.33 -0.59 16 2 C -0.09 -0.62 2.51 -90.62 -0.23 -0.85 16 3 C -0.15 -1.17 8.85 37.16 0.33 -0.84 16 4 C -0.10 -0.82 1.92 -90.50 -0.17 -1.00 16 5 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 6 C -0.12 -0.80 4.85 -26.69 -0.13 -0.93 16 7 C -0.14 -1.00 6.10 -26.39 -0.16 -1.16 16 8 C 0.11 0.98 6.42 -3.48 -0.02 0.96 16 9 N -0.63 -7.76 2.97 -178.24 -0.53 -8.29 16 10 C 0.70 11.54 8.30 -86.93 -0.72 10.82 16 11 O -0.59 -12.09 15.77 5.29 0.08 -12.00 16 12 N -0.74 -11.52 5.46 -65.23 -0.36 -11.88 16 13 C 0.13 2.48 5.68 -4.04 -0.02 2.45 16 14 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 15 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 16 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 17 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -27.01 13.29 55.43 0.74 -26.28 16 20 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 C 0.13 1.43 5.19 -3.71 -0.02 1.41 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.32 6.41 -51.93 -0.33 -0.01 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.51 6.56 -51.92 -0.34 0.17 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.42 6.37 -51.93 -0.33 0.09 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.66 5.64 -51.93 -0.29 0.37 16 38 H 0.39 4.99 5.96 -40.82 -0.24 4.75 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 46 H 0.10 1.23 5.61 -51.93 -0.29 0.94 16 47 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 362.82 15.07 5.47 5.47 Total: -1.00 -32.67 362.82 -9.69 -42.36 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -8.56 Total: -0.69 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -1.51 Total: -5.25 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: -0.15 Total: -46.44 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.08 Total: -12.00 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.67 -9.69 -42.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435969330.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.554 kcal (2) G-P(sol) polarization free energy of solvation -32.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds