Wall clock time and date at job start Tue Mar 31 2020 06:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 109.46738 * 2 1 4 4 C 1.52996 * 109.47012 * 120.00326 * 2 1 3 5 5 H 1.09005 * 109.52134 * 300.08122 * 4 2 1 6 6 C 1.53034 * 109.50095 * 60.15803 * 4 2 1 7 7 C 1.53039 * 109.53954 * 181.31642 * 6 4 2 8 8 C 1.53627 * 109.24113 * 298.51423 * 7 6 4 9 9 N 1.46926 * 108.54334 * 54.85618 * 8 7 6 10 10 C 1.34776 * 120.62780 * 126.36794 * 9 8 7 11 11 O 1.21587 * 119.99875 * 184.94263 * 10 9 8 12 12 N 1.34768 * 120.00394 * 4.94417 * 10 9 8 13 13 C 1.46504 * 120.00355 * 175.29057 * 12 10 9 14 14 C 1.52999 * 109.47036 * 179.72227 * 13 12 10 15 15 C 1.53005 * 109.46820 * 180.02562 * 14 13 12 16 16 C 1.50704 * 109.47082 * 179.97438 * 15 14 13 17 17 H 1.07992 * 119.99743 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99688 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00250 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99678 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47379 * 59.99750 * 20 18 16 22 22 H 1.48501 * 109.47081 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.46766 * 299.99876 * 20 18 16 24 24 C 1.46920 * 118.73776 * 306.09310 * 9 8 7 25 25 H 1.09000 * 109.47019 * 59.99773 * 1 2 3 26 26 H 1.08994 * 109.47052 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47181 * 299.99952 * 1 2 3 28 28 H 1.08998 * 109.46766 * 240.00319 * 2 1 3 29 29 H 1.09010 * 109.46732 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47550 * 299.99902 * 3 2 1 31 31 H 1.08998 * 109.47231 * 60.00604 * 3 2 1 32 32 H 1.08996 * 109.46391 * 301.34162 * 6 4 2 33 33 H 1.09005 * 109.45804 * 61.30910 * 6 4 2 34 34 H 1.08998 * 109.49559 * 58.58858 * 7 6 4 35 35 H 1.09004 * 109.49859 * 178.65437 * 7 6 4 36 36 H 1.09003 * 109.73812 * 295.11827 * 8 7 6 37 37 H 1.08999 * 109.66248 * 174.55383 * 8 7 6 38 38 H 0.97009 * 119.99881 * 355.01030 * 12 10 9 39 39 H 1.08997 * 109.47040 * 299.72418 * 13 12 10 40 40 H 1.08997 * 109.46669 * 59.72363 * 13 12 10 41 41 H 1.09005 * 109.47208 * 299.99717 * 14 13 12 42 42 H 1.08997 * 109.47281 * 60.00510 * 14 13 12 43 43 H 1.08997 * 109.47063 * 300.00073 * 15 14 13 44 44 H 1.09003 * 109.47026 * 59.99729 * 15 14 13 45 45 H 0.96997 * 119.99926 * 180.02562 * 19 18 16 46 46 H 1.08997 * 109.58985 * 173.64812 * 24 9 8 47 47 H 1.08998 * 109.58880 * 293.93154 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6759 -0.2090 2.1398 6 6 1.5335 -2.1654 1.2478 7 6 2.0159 -2.8782 2.5132 8 6 3.5519 -2.9049 2.5250 9 7 4.0442 -1.5278 2.3837 10 6 4.9168 -1.0158 3.2742 11 8 5.2476 0.1517 3.1988 12 7 5.4226 -1.7979 4.2482 13 6 6.4480 -1.2711 5.1523 14 6 6.8422 -2.3517 6.1612 15 6 7.9126 -1.8013 7.1058 16 6 8.3005 -2.8654 8.1000 17 1 7.8309 -3.8371 8.0616 18 6 9.2557 -2.5986 9.0578 19 7 9.8280 -1.4154 9.1042 20 14 9.7370 -3.9178 10.2897 21 1 10.2742 -5.0983 9.5663 22 1 10.7758 -3.3836 11.2065 23 1 8.5431 -4.3201 11.0758 24 6 3.5720 -0.7216 1.2499 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.1301 1.4426 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 0.4439 -2.1681 1.2225 33 1 1.9184 -2.6843 0.3698 34 1 1.6521 -2.3456 3.3919 35 1 1.6349 -3.8995 2.5232 36 1 3.9159 -3.5101 1.6947 37 1 3.9042 -3.3241 3.4674 38 1 5.1049 -2.7085 4.3532 39 1 7.3242 -0.9758 4.5752 40 1 6.0537 -0.4048 5.6833 41 1 5.9659 -2.6470 6.7383 42 1 7.2365 -3.2181 5.6302 43 1 8.7889 -1.5056 6.5290 44 1 7.5179 -0.9350 7.6368 45 1 10.5002 -1.2278 9.7778 46 1 3.9375 0.3003 1.3506 47 1 3.9397 -1.1510 0.3179 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435969330.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:34 Heat of formation + Delta-G solvation = -82.248247 kcal Electronic energy + Delta-G solvation = -22466.913954 eV Core-core repulsion = 19261.513288 eV Total energy + Delta-G solvation = -3205.400667 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.54591 -39.36021 -36.98898 -36.42444 -35.17371 -33.40466 -32.82682 -30.80092 -28.68587 -28.18221 -26.04626 -24.95590 -24.14187 -22.34840 -22.25267 -20.75902 -20.48004 -19.12379 -18.46315 -17.34554 -16.95580 -16.49518 -16.19373 -15.64722 -15.56309 -15.39251 -15.01993 -14.86772 -14.55067 -14.23857 -14.20479 -13.83879 -13.74702 -13.49007 -13.32532 -12.94032 -12.71379 -12.56789 -12.51274 -12.40842 -12.27200 -12.10228 -11.75837 -11.68154 -11.61519 -11.51752 -11.36638 -11.24988 -11.08140 -11.02509 -10.54491 -10.24435 -9.46058 -8.18840 -6.30669 1.41886 1.45341 1.53058 1.62426 2.08614 2.42366 2.94171 3.14671 3.69886 3.77760 3.88856 4.05677 4.12555 4.18345 4.21505 4.24741 4.39049 4.45558 4.54244 4.60213 4.63850 4.79515 4.82818 4.84845 4.93464 4.94387 4.97726 5.02105 5.02722 5.10851 5.13215 5.16223 5.21552 5.27907 5.40008 5.45576 5.51408 5.52632 5.57140 5.62552 5.70439 5.84024 5.92787 6.22504 6.86035 6.95376 7.38788 7.52415 8.93199 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038617 B = 0.002614 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.899282 B =10709.686268 C =11219.828036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.153 4.153 4 C -0.090 4.090 5 H 0.052 0.948 6 C -0.111 4.111 7 C -0.131 4.131 8 C 0.102 3.898 9 N -0.627 5.627 10 C 0.697 3.303 11 O -0.641 6.641 12 N -0.732 5.732 13 C 0.149 3.851 14 C -0.099 4.099 15 C 0.024 3.976 16 C -0.541 4.541 17 H 0.068 0.932 18 C -0.005 4.005 19 N -0.936 5.936 20 Si 0.969 3.031 21 H -0.265 1.265 22 H -0.287 1.287 23 H -0.265 1.265 24 C 0.129 3.871 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.046 0.954 28 H 0.083 0.917 29 H 0.047 0.953 30 H 0.065 0.935 31 H 0.043 0.957 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.053 0.947 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.409 0.591 39 H 0.046 0.954 40 H 0.044 0.956 41 H 0.067 0.933 42 H 0.069 0.931 43 H -0.008 1.008 44 H -0.009 1.009 45 H 0.263 0.737 46 H 0.067 0.933 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.227 -4.792 -20.546 29.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.103 4.103 3 C -0.211 4.211 4 C -0.110 4.110 5 H 0.071 0.929 6 C -0.149 4.149 7 C -0.169 4.169 8 C -0.020 4.020 9 N -0.363 5.363 10 C 0.398 3.602 11 O -0.523 6.523 12 N -0.390 5.390 13 C 0.024 3.976 14 C -0.137 4.137 15 C -0.014 4.014 16 C -0.579 4.579 17 H 0.086 0.914 18 C -0.202 4.202 19 N -0.576 5.576 20 Si 0.793 3.207 21 H -0.189 1.189 22 H -0.212 1.212 23 H -0.190 1.190 24 C 0.007 3.993 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.065 0.935 28 H 0.101 0.899 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.071 0.929 35 H 0.118 0.882 36 H 0.107 0.893 37 H 0.101 0.899 38 H 0.248 0.752 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.011 0.989 44 H 0.009 0.991 45 H 0.072 0.928 46 H 0.085 0.915 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -20.843 -3.875 -20.508 29.496 hybrid contribution 0.660 -0.242 1.069 1.280 sum -20.183 -4.117 -19.438 28.322 Atomic orbital electron populations 1.21861 0.94132 1.02503 1.01722 1.21070 0.96547 0.95449 0.97239 1.21923 1.00779 0.96637 1.01722 1.21524 0.93447 0.97506 0.98497 0.92899 1.21630 1.01587 0.93591 0.98062 1.21993 0.93824 1.02520 0.98592 1.22040 0.95564 0.81202 1.03170 1.47363 1.46011 1.15732 1.27215 1.16135 0.79670 0.84291 0.80120 1.90863 1.66615 1.17574 1.77253 1.45230 1.43518 1.16931 1.33281 1.21082 0.89271 0.96855 0.90352 1.21582 0.99241 0.97087 0.95782 1.18935 0.93240 0.95536 0.93639 1.21645 1.21957 0.99696 1.14621 0.91431 1.26052 0.96249 0.97889 1.00028 1.70113 1.27974 1.23391 1.36114 0.85447 0.78082 0.78861 0.78317 1.18927 1.21211 1.18993 1.21659 0.94635 0.95749 0.87299 0.92043 0.91266 0.93507 0.89872 0.93383 0.91599 0.93785 0.90063 0.90367 0.92865 0.88163 0.89279 0.89900 0.75237 0.93534 0.93789 0.91442 0.91252 0.98946 0.99055 0.92808 0.91497 0.90375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 8.85 71.99 0.64 -0.86 16 2 C -0.08 -1.06 2.51 -10.79 -0.03 -1.09 16 3 C -0.15 -2.36 8.85 71.98 0.64 -1.72 16 4 C -0.09 -1.41 1.92 -10.72 -0.02 -1.43 16 5 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 6 C -0.11 -1.21 4.85 30.62 0.15 -1.06 16 7 C -0.13 -1.55 6.10 30.82 0.19 -1.36 16 8 C 0.10 1.55 6.42 86.51 0.56 2.10 16 9 N -0.63 -14.83 2.97 -836.09 -2.48 -17.31 16 10 C 0.70 23.08 8.30 179.06 1.49 24.57 16 11 O -0.64 -27.37 15.77 -3.99 -0.06 -27.43 16 12 N -0.73 -22.41 5.46 -478.55 -2.62 -25.03 16 13 C 0.15 5.63 5.68 86.38 0.49 6.12 16 14 C -0.10 -3.92 5.27 30.60 0.16 -3.76 16 15 C 0.02 1.28 4.97 29.85 0.15 1.43 16 16 C -0.54 -30.44 9.11 25.60 0.23 -30.21 16 17 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 18 C 0.00 -0.26 5.46 84.66 0.46 0.20 16 19 N -0.94 -57.76 13.29 21.45 0.28 -57.47 16 20 Si 0.97 43.96 29.54 68.60 2.03 45.98 16 21 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 22 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 23 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 24 C 0.13 2.71 5.19 86.36 0.45 3.16 16 25 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.07 0.56 6.41 -2.39 -0.02 0.55 16 27 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.05 0.85 6.56 -2.38 -0.02 0.83 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.08 0.72 6.37 -2.39 -0.02 0.70 16 33 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 34 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.10 0.73 8.14 -2.39 -0.02 0.72 16 36 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.08 1.17 5.64 -2.39 -0.01 1.16 16 38 H 0.41 9.68 5.96 -92.70 -0.55 9.12 16 39 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 42 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 43 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 44 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 45 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 46 H 0.07 1.81 5.61 -2.39 -0.01 1.80 16 47 H 0.08 1.36 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -72.89 362.82 3.07 -69.81 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 0.37 Total: 15.35 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: 5.55 Total: -3.91 kcal Atomic # 7 Polarization: -95.00 SS G_CDS: -4.81 Total: -99.81 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -0.06 Total: -27.43 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -72.89 3.07 -69.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435969330.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.434 kcal (2) G-P(sol) polarization free energy of solvation -72.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds