Wall clock time and date at job start Tue Mar 31 2020 05:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52992 * 109.47197 * 2 1 4 4 C 1.53001 * 109.47042 * 120.00367 * 2 1 3 5 5 C 1.52998 * 109.46996 * 300.12940 * 4 2 1 6 6 H 1.09004 * 109.50039 * 321.78296 * 5 4 2 7 7 C 1.53119 * 109.50312 * 81.90225 * 5 4 2 8 8 C 1.53116 * 109.16102 * 177.59258 * 7 5 4 9 9 C 1.53032 * 109.28012 * 302.34725 * 8 7 5 10 10 N 1.46852 * 109.52299 * 59.17701 * 9 8 7 11 11 C 1.46904 * 110.99733 * 174.16183 * 10 9 8 12 12 C 1.53000 * 109.47221 * 294.21010 * 11 10 9 13 13 C 1.50698 * 109.47079 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00108 * 0.02562 * 13 12 11 15 15 C 1.37882 * 120.00024 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99530 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00085 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47063 * 60.00433 * 17 15 13 19 19 H 1.48499 * 109.46877 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47016 * 300.00123 * 17 15 13 21 21 C 1.46846 * 111.19712 * 298.25511 * 10 9 8 22 22 C 1.50703 * 109.46808 * 240.00157 * 2 1 3 23 23 N 1.34781 * 119.99998 * 60.00025 * 22 2 1 24 24 O 1.21281 * 119.99927 * 240.00105 * 22 2 1 25 25 H 1.09001 * 109.46781 * 318.49615 * 1 2 3 26 26 H 1.08994 * 109.46750 * 78.49500 * 1 2 3 27 27 H 1.09001 * 109.46776 * 198.49516 * 1 2 3 28 28 H 1.09004 * 109.47495 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.47354 * 300.00043 * 3 2 1 30 30 H 1.09000 * 109.47496 * 60.00150 * 3 2 1 31 31 H 1.09000 * 109.47262 * 60.13175 * 4 2 1 32 32 H 1.09000 * 109.46916 * 180.12970 * 4 2 1 33 33 H 1.09004 * 109.51966 * 297.50293 * 7 5 4 34 34 H 1.08997 * 109.52234 * 57.68758 * 7 5 4 35 35 H 1.09001 * 109.50477 * 182.39955 * 8 7 5 36 36 H 1.09003 * 109.50115 * 62.28721 * 8 7 5 37 37 H 1.08996 * 109.46134 * 299.16152 * 9 8 7 38 38 H 1.08994 * 109.45420 * 179.19008 * 9 8 7 39 39 H 1.08998 * 109.47308 * 54.21103 * 11 10 9 40 40 H 1.08996 * 109.46992 * 174.20824 * 11 10 9 41 41 H 1.08998 * 109.47055 * 300.00247 * 12 11 10 42 42 H 1.08996 * 109.47290 * 59.99996 * 12 11 10 43 43 H 0.97004 * 119.99914 * 179.97438 * 16 15 13 44 44 H 1.08991 * 109.46345 * 301.72840 * 21 10 9 45 45 H 1.08996 * 109.44914 * 181.75001 * 21 10 9 46 46 H 0.96994 * 119.99628 * 359.97438 * 23 22 2 47 47 H 0.97003 * 119.99681 * 180.02562 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5274 -0.0020 2.4985 6 1 1.5427 1.0748 2.3303 7 6 0.0949 -0.4534 2.7965 8 6 -0.3887 0.2250 4.0812 9 6 0.5632 -0.1255 5.2269 10 7 1.9199 0.3274 4.8938 11 6 2.8333 0.1322 6.0277 12 6 2.4133 1.0425 7.1835 13 6 3.3507 0.8427 8.3464 14 1 4.1648 0.1374 8.2687 15 6 3.1695 1.5612 9.5092 16 7 2.1784 2.4205 9.6035 17 14 4.3310 1.3131 10.9509 18 1 5.7163 1.6487 10.5341 19 1 3.9234 2.1967 12.0727 20 1 4.2764 -0.1037 11.3924 21 6 2.4238 -0.3461 3.6901 22 6 2.0323 -0.7104 -1.2305 23 7 1.7067 -0.2499 -2.4546 24 8 2.7295 -1.6965 -1.1193 25 1 -0.3633 0.7697 0.6810 26 1 -0.3632 0.2050 -1.0070 27 1 -0.3633 -0.9746 0.3260 28 1 3.1301 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6786 -1.7497 1.2480 32 1 3.1300 -0.7193 1.2504 33 1 -0.5556 -0.1715 1.9685 34 1 0.0734 -1.5355 2.9257 35 1 -1.3925 -0.1250 4.3219 36 1 -0.4041 1.3056 3.9385 37 1 0.5676 -1.2049 5.3782 38 1 0.2296 0.3677 6.1399 39 1 2.7936 -0.9078 6.3514 40 1 3.8499 0.3789 5.7218 41 1 2.4530 2.0825 6.8597 42 1 1.3966 0.7958 7.4893 43 1 2.0507 2.9257 10.4217 44 1 2.4194 -1.4244 3.8486 45 1 3.4416 -0.0129 3.4871 46 1 1.1488 0.5385 -2.5435 47 1 2.0297 -0.7074 -3.2467 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451211445.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:28 Heat of formation + Delta-G solvation = -62.045537 kcal Electronic energy + Delta-G solvation = -23107.992531 eV Core-core repulsion = 19903.467919 eV Total energy + Delta-G solvation = -3204.524611 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.55960 -38.79263 -36.32372 -34.20357 -33.46562 -32.28192 -31.01289 -29.17132 -27.83494 -26.47541 -24.91962 -23.80563 -22.63024 -21.80435 -19.96935 -19.42084 -19.07416 -17.62488 -16.61395 -16.40636 -15.59509 -15.17909 -14.69672 -14.49690 -14.44970 -14.30017 -14.15748 -13.68791 -13.38225 -13.00453 -12.80956 -12.55820 -12.47168 -12.27130 -11.88237 -11.70520 -11.58085 -11.20963 -11.13117 -10.98637 -10.86484 -10.66386 -10.54382 -10.43209 -10.14388 -10.02702 -9.94578 -9.78490 -9.71783 -9.19544 -9.08111 -8.29051 -7.61166 -5.96330 -3.98368 2.42644 3.23701 3.35757 3.39791 3.42514 4.34434 4.43840 4.49814 4.61622 4.67124 4.92400 5.00259 5.09889 5.19014 5.26294 5.38987 5.40629 5.45789 5.51936 5.67603 5.69257 5.74439 5.80132 5.90530 5.92263 5.98559 6.02369 6.04630 6.11388 6.23017 6.27073 6.39256 6.44848 6.49498 6.54451 6.62806 6.70281 7.03749 7.03951 7.59609 7.67918 7.86757 7.96320 8.01680 8.13582 8.48164 9.08823 9.64900 11.15029 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034266 B = 0.003044 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.938756 B = 9195.857819 C = 9523.374254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.079 4.079 3 C -0.145 4.145 4 C -0.091 4.091 5 C -0.085 4.085 6 H 0.085 0.915 7 C -0.132 4.132 8 C -0.116 4.116 9 C 0.054 3.946 10 N -0.537 5.537 11 C 0.063 3.937 12 C 0.029 3.971 13 C -0.522 4.522 14 H 0.053 0.947 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.278 1.278 21 C 0.061 3.939 22 C 0.526 3.474 23 N -0.858 5.858 24 O -0.541 6.541 25 H 0.080 0.920 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.022 0.978 38 H 0.084 0.916 39 H 0.017 0.983 40 H 0.059 0.941 41 H 0.024 0.976 42 H 0.017 0.983 43 H 0.260 0.740 44 H 0.024 0.976 45 H 0.068 0.932 46 H 0.400 0.600 47 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.233 -2.824 -23.556 24.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.083 4.083 3 C -0.202 4.202 4 C -0.129 4.129 5 C -0.104 4.104 6 H 0.103 0.897 7 C -0.169 4.169 8 C -0.154 4.154 9 C -0.074 4.074 10 N -0.262 5.262 11 C -0.064 4.064 12 C -0.008 4.008 13 C -0.561 4.561 14 H 0.071 0.929 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.067 4.067 22 C 0.311 3.689 23 N -0.421 5.421 24 O -0.417 6.417 25 H 0.099 0.901 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.041 0.959 38 H 0.102 0.898 39 H 0.036 0.964 40 H 0.078 0.922 41 H 0.042 0.958 42 H 0.035 0.965 43 H 0.070 0.930 44 H 0.042 0.958 45 H 0.087 0.913 46 H 0.229 0.771 47 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -5.890 -2.822 -23.247 24.147 hybrid contribution 0.575 -0.807 0.626 1.172 sum -5.315 -3.629 -22.621 23.519 Atomic orbital electron populations 1.22225 0.92634 1.03499 1.01970 1.20787 0.97230 0.96833 0.93409 1.21990 1.01880 0.93370 1.02990 1.21505 1.01241 0.98905 0.91281 1.21302 0.94872 1.01010 0.93201 0.89736 1.22147 0.96453 0.99938 0.98350 1.21594 0.97831 1.01206 0.94773 1.22099 0.89364 0.97334 0.98634 1.62003 1.02442 1.57135 1.04575 1.22311 0.94805 0.98413 0.90822 1.19082 0.96445 0.94934 0.90349 1.21181 1.13339 1.22989 0.98574 0.92899 1.24988 0.95503 0.95209 0.98600 1.69965 1.30272 1.25697 1.27374 0.86665 0.81331 0.77996 0.82039 1.20236 1.21291 1.20325 1.22079 0.98051 0.95934 0.90676 1.20719 0.79085 0.83868 0.85183 1.43909 1.56218 1.33869 1.08130 1.90743 1.37672 1.26389 1.86928 0.90095 0.92840 0.91424 0.91948 0.92494 0.90127 0.91330 0.91169 0.90542 0.92739 0.92214 0.91306 0.95950 0.89752 0.96428 0.92220 0.95774 0.96517 0.92990 0.95781 0.91331 0.77105 0.77087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 6.84 37.16 0.25 -0.76 16 2 C -0.08 -0.69 0.64 -155.66 -0.10 -0.79 16 3 C -0.15 -1.10 8.01 37.15 0.30 -0.80 16 4 C -0.09 -1.02 3.22 -26.73 -0.09 -1.11 16 5 C -0.09 -1.03 2.02 -90.54 -0.18 -1.21 16 6 H 0.08 1.02 5.63 -51.93 -0.29 0.73 16 7 C -0.13 -1.50 4.54 -26.61 -0.12 -1.62 16 8 C -0.12 -1.56 6.09 -26.65 -0.16 -1.72 16 9 C 0.05 0.93 5.29 -3.83 -0.02 0.91 16 10 N -0.54 -9.95 4.66 -234.68 -1.09 -11.04 16 11 C 0.06 1.38 4.90 -3.82 -0.02 1.36 16 12 C 0.03 0.77 4.90 -27.88 -0.14 0.64 16 13 C -0.52 -15.04 9.11 -34.44 -0.31 -15.36 16 14 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -27.13 13.29 55.43 0.74 -26.39 16 17 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 C 0.06 0.94 4.63 -3.83 -0.02 0.92 16 22 C 0.53 5.28 6.75 -10.98 -0.07 5.21 16 23 N -0.86 -5.06 8.50 31.22 0.27 -4.80 16 24 O -0.54 -7.92 16.82 5.56 0.09 -7.82 16 25 H 0.08 0.54 6.30 -51.93 -0.33 0.22 16 26 H 0.05 0.27 7.16 -51.93 -0.37 -0.10 16 27 H 0.07 0.52 7.08 -51.93 -0.37 0.15 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.30 7.57 -51.93 -0.39 -0.09 16 30 H 0.08 0.65 6.04 -51.93 -0.31 0.33 16 31 H 0.07 0.84 7.86 -51.93 -0.41 0.43 16 32 H 0.07 0.88 7.92 -51.93 -0.41 0.47 16 33 H 0.08 0.70 3.95 -51.93 -0.21 0.50 16 34 H 0.05 0.65 8.08 -51.93 -0.42 0.23 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 1.65 6.21 -51.93 -0.32 1.32 16 39 H 0.02 0.39 8.12 -51.93 -0.42 -0.04 16 40 H 0.06 1.29 7.99 -51.93 -0.41 0.88 16 41 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.02 0.46 6.43 -51.93 -0.33 0.13 16 43 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.07 1.06 8.01 -51.93 -0.42 0.64 16 46 H 0.40 1.27 7.60 -40.82 -0.31 0.96 16 47 H 0.40 1.99 8.93 -40.82 -0.36 1.63 16 LS Contribution 352.33 15.07 5.31 5.31 Total: -1.00 -33.39 352.33 -8.66 -42.05 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -8.17 Total: -1.47 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: -0.78 Total: -12.75 kcal Atomic # 7 Polarization: -42.14 SS G_CDS: -0.09 Total: -42.23 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: 0.09 Total: -7.82 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.39 -8.66 -42.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451211445.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.993 kcal (2) G-P(sol) polarization free energy of solvation -33.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds