Wall clock time and date at job start Tue Mar 31 2020 06:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46952 * 2 1 4 4 C 1.53002 * 109.47025 * 240.00363 * 2 1 3 5 5 N 1.46497 * 109.47558 * 59.99969 * 4 2 1 6 6 C 1.34768 * 120.00242 * 180.02562 * 5 4 2 7 7 O 1.21587 * 120.00067 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00516 * 179.97438 * 6 5 4 9 9 C 1.46493 * 120.00701 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47694 * 179.97438 * 9 8 6 11 11 C 1.52992 * 109.47714 * 180.02562 * 10 9 8 12 12 C 1.50700 * 109.47696 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99559 * 359.97438 * 12 11 10 14 14 C 1.37870 * 119.99996 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99819 * 180.02562 * 14 12 11 16 16 Si 1.86793 * 120.00446 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47380 * 89.99775 * 16 14 12 18 18 H 1.48506 * 109.47233 * 210.00168 * 16 14 12 19 19 H 1.48505 * 109.46910 * 329.99886 * 16 14 12 20 20 C 1.52998 * 109.47451 * 119.99839 * 2 1 3 21 21 C 1.53790 * 113.61003 * 55.03279 * 20 2 1 22 22 C 1.53784 * 87.07893 * 220.01889 * 21 20 2 23 23 C 1.53777 * 113.61295 * 317.54288 * 20 2 1 24 24 H 1.09000 * 109.47804 * 306.18175 * 1 2 3 25 25 H 1.09003 * 109.47261 * 66.18767 * 1 2 3 26 26 H 1.09008 * 109.47042 * 186.18151 * 1 2 3 27 27 H 1.08998 * 109.46996 * 185.08520 * 3 2 1 28 28 H 1.09004 * 109.47055 * 305.08419 * 3 2 1 29 29 H 1.09004 * 109.47039 * 65.07904 * 3 2 1 30 30 H 1.09003 * 109.46718 * 180.02562 * 4 2 1 31 31 H 1.08998 * 109.46981 * 299.99368 * 4 2 1 32 32 H 0.96999 * 119.99695 * 359.97438 * 5 4 2 33 33 H 0.97006 * 119.99453 * 359.97438 * 8 6 5 34 34 H 1.09003 * 109.47078 * 300.00193 * 9 8 6 35 35 H 1.09001 * 109.47320 * 59.99713 * 9 8 6 36 36 H 1.09003 * 109.47022 * 300.00235 * 10 9 8 37 37 H 1.09001 * 109.46965 * 59.99503 * 10 9 8 38 38 H 1.09003 * 109.47064 * 300.00205 * 11 10 9 39 39 H 1.09001 * 109.47315 * 59.99712 * 11 10 9 40 40 H 0.96996 * 120.00385 * 180.02562 * 15 14 12 41 41 H 1.08991 * 112.91068 * 186.28577 * 20 2 1 42 42 H 1.08998 * 113.61106 * 105.47327 * 21 20 2 43 43 H 1.08997 * 113.69192 * 334.57745 * 21 20 2 44 44 H 1.08997 * 113.61217 * 139.98231 * 22 21 20 45 45 H 1.08997 * 113.61663 * 270.88231 * 22 21 20 46 46 H 1.08998 * 113.61950 * 25.42562 * 23 20 2 47 47 H 1.09007 * 113.60875 * 254.52338 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 1.5516 -0.0306 -2.4455 6 6 1.8768 -0.4913 -3.6695 7 8 2.5758 -1.4798 -3.7811 8 7 1.4272 0.1437 -4.7700 9 6 1.7811 -0.3567 -6.1006 10 6 1.1469 0.5380 -7.1674 11 6 1.5159 0.0150 -8.5570 12 6 0.8907 0.8959 -9.6078 13 1 0.2898 1.7439 -9.3138 14 6 1.0850 0.6188 -10.9443 15 7 0.5397 1.3879 -11.8613 16 14 2.1225 -0.8489 -11.4527 17 1 1.2545 -2.0464 -11.5859 18 1 2.7774 -0.5648 -12.7550 19 1 3.1606 -1.1023 -10.4215 20 6 2.0400 -0.7212 1.2492 21 6 1.4840 -2.1462 1.4079 22 6 1.3631 -1.8470 2.9115 23 6 1.2653 -0.3611 2.5278 24 1 -0.3635 0.6067 0.8294 25 1 -0.3634 0.4149 -0.9402 26 1 -0.3633 -1.0218 0.1107 27 1 3.1261 1.4439 -0.0911 28 1 1.6041 1.9820 -0.8410 29 1 1.7527 1.9295 0.9320 30 1 3.1300 -0.7216 -1.2490 31 1 1.6767 -1.7489 -1.2493 32 1 0.9937 0.7578 -2.3564 33 1 0.8692 0.9322 -4.6810 34 1 2.8649 -0.3476 -6.2157 35 1 1.4120 -1.3759 -6.2155 36 1 0.0630 0.5285 -7.0520 37 1 1.5155 1.5574 -7.0526 38 1 2.5997 0.0242 -8.6726 39 1 1.1469 -1.0042 -8.6714 40 1 0.6760 1.1928 -12.8016 41 1 3.1223 -0.6597 1.3625 42 1 2.2088 -2.9262 1.1749 43 1 0.5241 -2.2993 0.9147 44 1 0.4534 -2.2420 3.3635 45 1 2.2604 -2.0933 3.4793 46 1 0.2456 -0.0247 2.3405 47 1 1.8137 0.3001 3.1989 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454458255.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:56 Heat of formation + Delta-G solvation = -37.636443 kcal Electronic energy + Delta-G solvation = -22074.843314 eV Core-core repulsion = 18871.377161 eV Total energy + Delta-G solvation = -3203.466154 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.59589 -39.49618 -36.28357 -35.28352 -33.36702 -32.78611 -31.25686 -27.76044 -27.69167 -26.73027 -25.65976 -25.07680 -22.71879 -20.91402 -20.53563 -20.25006 -18.73794 -18.10132 -16.81933 -16.19392 -15.96442 -15.72830 -15.38894 -14.78871 -14.69151 -14.27813 -13.94998 -13.79756 -13.68005 -13.23971 -13.04292 -12.70883 -12.67102 -12.21899 -12.04663 -11.90542 -11.85286 -11.79422 -11.38401 -11.22111 -11.04036 -10.87081 -10.69139 -10.41726 -10.36017 -10.23194 -9.97784 -9.79686 -9.65422 -9.21093 -9.17424 -8.61380 -8.53996 -6.05042 -4.03607 2.83460 3.32833 3.37894 3.40236 3.45133 4.10444 4.22304 4.25300 4.42329 4.45954 4.47199 4.63269 4.72533 4.78960 5.00676 5.25371 5.28545 5.29170 5.34639 5.39642 5.45688 5.52495 5.55074 5.56987 5.61622 5.65091 5.69420 5.72692 5.77854 5.85861 5.95029 5.97968 6.07020 6.21076 6.41950 6.48030 6.49822 6.73063 6.85888 7.04943 7.25733 7.38974 7.77367 8.14908 8.51611 8.75667 8.98767 9.57334 11.08169 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.045480 B = 0.002362 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.504402 B =11850.388809 C =12156.071253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.066 4.066 3 C -0.141 4.141 4 C 0.152 3.848 5 N -0.748 5.748 6 C 0.699 3.301 7 O -0.595 6.595 8 N -0.743 5.743 9 C 0.133 3.867 10 C -0.113 4.113 11 C -0.011 4.011 12 C -0.521 4.521 13 H 0.072 0.928 14 C 0.066 3.934 15 N -0.904 5.904 16 Si 0.880 3.120 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.264 1.264 20 C -0.097 4.097 21 C -0.142 4.142 22 C -0.143 4.143 23 C -0.139 4.139 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.393 0.607 33 H 0.394 0.606 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.019 0.981 39 H 0.015 0.985 40 H 0.263 0.737 41 H 0.091 0.909 42 H 0.067 0.933 43 H 0.086 0.914 44 H 0.065 0.935 45 H 0.077 0.923 46 H 0.087 0.913 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.512 -2.060 30.987 31.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.067 4.067 3 C -0.198 4.198 4 C 0.027 3.973 5 N -0.406 5.406 6 C 0.399 3.601 7 O -0.474 6.474 8 N -0.397 5.397 9 C 0.010 3.990 10 C -0.151 4.151 11 C -0.049 4.049 12 C -0.559 4.559 13 H 0.090 0.910 14 C -0.136 4.136 15 N -0.542 5.542 16 Si 0.707 3.293 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.189 1.189 20 C -0.116 4.116 21 C -0.179 4.179 22 C -0.181 4.181 23 C -0.176 4.176 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.228 0.772 33 H 0.227 0.773 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.037 0.963 39 H 0.033 0.967 40 H 0.073 0.927 41 H 0.109 0.891 42 H 0.086 0.914 43 H 0.104 0.896 44 H 0.084 0.916 45 H 0.096 0.904 46 H 0.106 0.894 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.163 -2.971 30.663 30.829 hybrid contribution -0.015 0.049 -0.384 0.388 sum 1.147 -2.923 30.279 30.441 Atomic orbital electron populations 1.22047 0.94214 1.02417 1.01805 1.20708 0.96070 0.95821 0.94057 1.21845 1.01337 0.94856 1.01768 1.21130 0.98778 0.95610 0.81769 1.45169 1.57369 1.33536 1.04509 1.16016 0.80528 0.83077 0.80466 1.90911 1.42826 1.27616 1.86016 1.45326 1.56097 1.32726 1.05565 1.21494 1.00052 0.98332 0.79143 1.21700 1.00009 0.98420 0.94930 1.19503 0.96966 0.96683 0.91774 1.21099 1.31870 1.13052 0.89889 0.91032 1.25033 0.95428 0.96442 0.96655 1.69913 1.44883 1.38740 1.00710 0.86770 0.81264 0.83201 0.78035 1.20249 1.21393 1.18856 1.22518 0.99857 0.95731 0.93445 1.23054 1.01821 0.96733 0.96340 1.22795 1.01897 0.96744 0.96654 1.23059 1.01128 0.96595 0.96836 0.92014 0.92527 0.91961 0.92369 0.92614 0.92315 0.91867 0.91678 0.77194 0.77265 0.92032 0.92043 0.92193 0.92164 0.96279 0.96717 0.92723 0.89061 0.91447 0.89592 0.91624 0.90394 0.89449 0.91763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 7.44 37.16 0.28 -0.64 16 2 C -0.07 -0.44 0.43 -154.51 -0.07 -0.51 16 3 C -0.14 -0.89 8.20 37.16 0.30 -0.58 16 4 C 0.15 1.47 4.42 -4.04 -0.02 1.46 16 5 N -0.75 -7.97 4.94 -65.23 -0.32 -8.30 16 6 C 0.70 10.57 8.57 -86.93 -0.74 9.83 16 7 O -0.60 -11.63 16.34 5.29 0.09 -11.54 16 8 N -0.74 -10.55 5.56 -65.23 -0.36 -10.92 16 9 C 0.13 2.28 5.67 -4.05 -0.02 2.26 16 10 C -0.11 -2.12 5.27 -26.74 -0.14 -2.27 16 11 C -0.01 -0.27 4.04 -27.89 -0.11 -0.38 16 12 C -0.52 -14.77 9.66 -34.44 -0.33 -15.10 16 13 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 14 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 15 N -0.90 -27.88 13.96 55.43 0.77 -27.10 16 16 Si 0.88 21.91 27.47 -169.99 -4.67 17.25 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 18 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 19 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 20 C -0.10 -0.60 3.03 -89.81 -0.27 -0.88 16 21 C -0.14 -0.92 6.71 -25.91 -0.17 -1.09 16 22 C -0.14 -0.81 8.08 -25.92 -0.21 -1.02 16 23 C -0.14 -0.76 7.16 -25.92 -0.19 -0.94 16 24 H 0.06 0.33 6.43 -51.93 -0.33 -0.01 16 25 H 0.06 0.36 6.71 -51.93 -0.35 0.01 16 26 H 0.06 0.40 6.01 -51.92 -0.31 0.09 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.34 7.01 -51.93 -0.36 -0.02 16 29 H 0.06 0.33 7.95 -51.93 -0.41 -0.09 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.71 7.61 -51.93 -0.39 0.32 16 32 H 0.39 3.18 6.21 -40.82 -0.25 2.93 16 33 H 0.39 4.46 8.49 -40.82 -0.35 4.11 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 39 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 40 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 41 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.09 0.57 6.02 -51.93 -0.31 0.26 16 44 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.09 0.46 5.72 -51.93 -0.30 0.16 16 47 H 0.06 0.33 8.14 -51.92 -0.42 -0.09 16 LS Contribution 361.95 15.07 5.45 5.45 Total: -1.00 -33.22 361.95 -9.21 -42.43 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -8.38 Total: 0.76 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: -1.80 Total: -8.03 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: 0.09 Total: -46.31 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.25 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.22 -9.21 -42.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454458255.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.797 kcal (2) G-P(sol) polarization free energy of solvation -33.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds