Wall clock time and date at job start Tue Mar 31 2020 06:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46952 * 2 1 4 4 C 1.53002 * 109.47025 * 240.00363 * 2 1 3 5 5 N 1.46497 * 109.47558 * 59.99969 * 4 2 1 6 6 C 1.34768 * 120.00242 * 180.02562 * 5 4 2 7 7 O 1.21587 * 120.00067 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00516 * 179.97438 * 6 5 4 9 9 C 1.46493 * 120.00701 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47694 * 179.97438 * 9 8 6 11 11 C 1.52992 * 109.47714 * 180.02562 * 10 9 8 12 12 C 1.50700 * 109.47696 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99559 * 359.97438 * 12 11 10 14 14 C 1.37870 * 119.99996 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99819 * 180.02562 * 14 12 11 16 16 Si 1.86793 * 120.00446 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47380 * 89.99775 * 16 14 12 18 18 H 1.48506 * 109.47233 * 210.00168 * 16 14 12 19 19 H 1.48505 * 109.46910 * 329.99886 * 16 14 12 20 20 C 1.52998 * 109.47451 * 119.99839 * 2 1 3 21 21 C 1.53790 * 113.61003 * 55.03279 * 20 2 1 22 22 C 1.53784 * 87.07893 * 220.01889 * 21 20 2 23 23 C 1.53777 * 113.61295 * 317.54288 * 20 2 1 24 24 H 1.09000 * 109.47804 * 306.18175 * 1 2 3 25 25 H 1.09003 * 109.47261 * 66.18767 * 1 2 3 26 26 H 1.09008 * 109.47042 * 186.18151 * 1 2 3 27 27 H 1.08998 * 109.46996 * 185.08520 * 3 2 1 28 28 H 1.09004 * 109.47055 * 305.08419 * 3 2 1 29 29 H 1.09004 * 109.47039 * 65.07904 * 3 2 1 30 30 H 1.09003 * 109.46718 * 180.02562 * 4 2 1 31 31 H 1.08998 * 109.46981 * 299.99368 * 4 2 1 32 32 H 0.96999 * 119.99695 * 359.97438 * 5 4 2 33 33 H 0.97006 * 119.99453 * 359.97438 * 8 6 5 34 34 H 1.09003 * 109.47078 * 300.00193 * 9 8 6 35 35 H 1.09001 * 109.47320 * 59.99713 * 9 8 6 36 36 H 1.09003 * 109.47022 * 300.00235 * 10 9 8 37 37 H 1.09001 * 109.46965 * 59.99503 * 10 9 8 38 38 H 1.09003 * 109.47064 * 300.00205 * 11 10 9 39 39 H 1.09001 * 109.47315 * 59.99712 * 11 10 9 40 40 H 0.96996 * 120.00385 * 180.02562 * 15 14 12 41 41 H 1.08991 * 112.91068 * 186.28577 * 20 2 1 42 42 H 1.08998 * 113.61106 * 105.47327 * 21 20 2 43 43 H 1.08997 * 113.69192 * 334.57745 * 21 20 2 44 44 H 1.08997 * 113.61217 * 139.98231 * 22 21 20 45 45 H 1.08997 * 113.61663 * 270.88231 * 22 21 20 46 46 H 1.08998 * 113.61950 * 25.42562 * 23 20 2 47 47 H 1.09007 * 113.60875 * 254.52338 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 1.5516 -0.0306 -2.4455 6 6 1.8768 -0.4913 -3.6695 7 8 2.5758 -1.4798 -3.7811 8 7 1.4272 0.1437 -4.7700 9 6 1.7811 -0.3567 -6.1006 10 6 1.1469 0.5380 -7.1674 11 6 1.5159 0.0150 -8.5570 12 6 0.8907 0.8959 -9.6078 13 1 0.2898 1.7439 -9.3138 14 6 1.0850 0.6188 -10.9443 15 7 0.5397 1.3879 -11.8613 16 14 2.1225 -0.8489 -11.4527 17 1 1.2545 -2.0464 -11.5859 18 1 2.7774 -0.5648 -12.7550 19 1 3.1606 -1.1023 -10.4215 20 6 2.0400 -0.7212 1.2492 21 6 1.4840 -2.1462 1.4079 22 6 1.3631 -1.8470 2.9115 23 6 1.2653 -0.3611 2.5278 24 1 -0.3635 0.6067 0.8294 25 1 -0.3634 0.4149 -0.9402 26 1 -0.3633 -1.0218 0.1107 27 1 3.1261 1.4439 -0.0911 28 1 1.6041 1.9820 -0.8410 29 1 1.7527 1.9295 0.9320 30 1 3.1300 -0.7216 -1.2490 31 1 1.6767 -1.7489 -1.2493 32 1 0.9937 0.7578 -2.3564 33 1 0.8692 0.9322 -4.6810 34 1 2.8649 -0.3476 -6.2157 35 1 1.4120 -1.3759 -6.2155 36 1 0.0630 0.5285 -7.0520 37 1 1.5155 1.5574 -7.0526 38 1 2.5997 0.0242 -8.6726 39 1 1.1469 -1.0042 -8.6714 40 1 0.6760 1.1928 -12.8016 41 1 3.1223 -0.6597 1.3625 42 1 2.2088 -2.9262 1.1749 43 1 0.5241 -2.2993 0.9147 44 1 0.4534 -2.2420 3.3635 45 1 2.2604 -2.0933 3.4793 46 1 0.2456 -0.0247 2.3405 47 1 1.8137 0.3001 3.1989 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000454458255.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:56 Heat of formation + Delta-G solvation = -58.911290 kcal Electronic energy + Delta-G solvation = -22075.765861 eV Core-core repulsion = 18871.377161 eV Total energy + Delta-G solvation = -3204.388700 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.38286 -40.43790 -37.29534 -36.55629 -35.13404 -33.92180 -32.93237 -29.13707 -28.24883 -27.68439 -26.14453 -25.90382 -24.34762 -22.24887 -21.79696 -21.09899 -19.57562 -19.05532 -18.79193 -17.31651 -16.91917 -16.51549 -16.34556 -16.04188 -15.85281 -15.62340 -15.08367 -14.90119 -14.75852 -14.49297 -13.87926 -13.76903 -13.64689 -13.55117 -13.24436 -12.74050 -12.70158 -12.66911 -12.46241 -12.33948 -11.92997 -11.90682 -11.78103 -11.76099 -11.58400 -11.36506 -11.31531 -11.14436 -10.91657 -10.81921 -10.75433 -10.36004 -9.72698 -8.28754 -6.32406 1.37488 1.39088 1.51096 1.74686 2.16730 2.37028 3.06931 3.33803 3.56236 3.71488 3.79040 3.99148 4.08396 4.11854 4.20203 4.23319 4.27147 4.45599 4.52433 4.67875 4.72181 4.83517 4.88443 4.90931 4.91599 4.92189 4.96462 5.05208 5.07553 5.08904 5.12954 5.18330 5.23908 5.36905 5.42321 5.43759 5.48817 5.52602 5.55171 5.57354 5.66040 5.73563 6.02919 6.28267 6.75426 7.11790 7.32325 7.59836 8.87524 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.045480 B = 0.002362 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.504402 B =11850.388809 C =12156.071253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.055 4.055 3 C -0.140 4.140 4 C 0.152 3.848 5 N -0.728 5.728 6 C 0.696 3.304 7 O -0.641 6.641 8 N -0.733 5.733 9 C 0.147 3.853 10 C -0.098 4.098 11 C -0.013 4.013 12 C -0.529 4.529 13 H 0.038 0.962 14 C 0.004 3.996 15 N -0.950 5.950 16 Si 0.947 3.053 17 H -0.267 1.267 18 H -0.284 1.284 19 H -0.248 1.248 20 C -0.098 4.098 21 C -0.148 4.148 22 C -0.142 4.142 23 C -0.132 4.132 24 H 0.076 0.924 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.409 0.591 33 H 0.410 0.590 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.021 0.979 39 H 0.019 0.981 40 H 0.266 0.734 41 H 0.088 0.912 42 H 0.057 0.943 43 H 0.084 0.916 44 H 0.069 0.931 45 H 0.080 0.920 46 H 0.093 0.907 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.609 -2.275 32.813 32.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.055 4.055 3 C -0.197 4.197 4 C 0.028 3.972 5 N -0.385 5.385 6 C 0.396 3.604 7 O -0.523 6.523 8 N -0.389 5.389 9 C 0.022 3.978 10 C -0.136 4.136 11 C -0.051 4.051 12 C -0.567 4.567 13 H 0.057 0.943 14 C -0.193 4.193 15 N -0.591 5.591 16 Si 0.771 3.229 17 H -0.193 1.193 18 H -0.210 1.210 19 H -0.172 1.172 20 C -0.117 4.117 21 C -0.185 4.185 22 C -0.179 4.179 23 C -0.169 4.169 24 H 0.094 0.906 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.247 0.753 33 H 0.246 0.754 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.039 0.961 39 H 0.038 0.962 40 H 0.075 0.925 41 H 0.106 0.894 42 H 0.076 0.924 43 H 0.102 0.898 44 H 0.088 0.912 45 H 0.098 0.902 46 H 0.112 0.888 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.227 -3.141 32.542 32.716 hybrid contribution -0.093 0.176 -0.907 0.929 sum 1.134 -2.964 31.635 31.794 Atomic orbital electron populations 1.22055 0.93420 1.02540 1.02443 1.20625 0.96550 0.95832 0.92537 1.21848 1.00892 0.94384 1.02619 1.21201 0.98014 0.95472 0.82558 1.45014 1.56575 1.33612 1.03345 1.16181 0.80163 0.82591 0.81480 1.90883 1.44936 1.29739 1.86772 1.45040 1.56202 1.33175 1.04456 1.21127 0.99223 0.97475 0.79958 1.21465 1.00452 0.98733 0.92974 1.19470 0.96550 0.96046 0.93004 1.21458 1.31263 1.12671 0.91326 0.94340 1.25985 0.96917 0.99628 0.96798 1.70056 1.46818 1.40966 1.01222 0.85700 0.79859 0.79395 0.77973 1.19256 1.21022 1.17191 1.22525 0.99862 0.95583 0.93709 1.23082 1.01510 0.96674 0.97250 1.22800 1.02241 0.96969 0.95920 1.23036 1.01291 0.96499 0.96064 0.90560 0.92511 0.92337 0.93087 0.92289 0.91037 0.93262 0.92970 0.75339 0.75350 0.92884 0.92810 0.91665 0.91685 0.96113 0.96221 0.92530 0.89364 0.92380 0.89760 0.91200 0.90172 0.88833 0.91149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 7.44 71.98 0.54 -0.96 16 2 C -0.05 -0.65 0.43 -52.18 -0.02 -0.67 16 3 C -0.14 -1.47 8.20 71.98 0.59 -0.88 16 4 C 0.15 2.85 4.42 86.38 0.38 3.23 16 5 N -0.73 -14.49 4.94 -478.55 -2.36 -16.86 16 6 C 0.70 20.29 8.57 179.06 1.53 21.82 16 7 O -0.64 -24.90 16.34 -3.99 -0.07 -24.97 16 8 N -0.73 -19.61 5.56 -478.56 -2.66 -22.27 16 9 C 0.15 4.82 5.67 86.38 0.49 5.31 16 10 C -0.10 -3.58 5.27 30.59 0.16 -3.41 16 11 C -0.01 -0.58 4.04 29.85 0.12 -0.46 16 12 C -0.53 -30.15 9.66 25.60 0.25 -29.91 16 13 H 0.04 2.37 7.99 -2.91 -0.02 2.35 16 14 C 0.00 0.21 5.47 84.65 0.46 0.67 16 15 N -0.95 -59.50 13.96 21.45 0.30 -59.20 16 16 Si 0.95 44.73 27.47 68.60 1.88 46.62 16 17 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 18 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 19 H -0.25 -11.01 6.54 99.48 0.65 -10.36 16 20 C -0.10 -1.09 3.03 -10.27 -0.03 -1.12 16 21 C -0.15 -1.80 6.71 31.12 0.21 -1.59 16 22 C -0.14 -1.38 8.08 31.12 0.25 -1.13 16 23 C -0.13 -1.15 7.16 31.12 0.22 -0.93 16 24 H 0.08 0.58 6.43 -2.39 -0.02 0.57 16 25 H 0.06 0.58 6.71 -2.39 -0.02 0.56 16 26 H 0.06 0.66 6.01 -2.38 -0.01 0.64 16 27 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.06 0.58 7.01 -2.38 -0.02 0.56 16 29 H 0.07 0.60 7.95 -2.38 -0.02 0.58 16 30 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.05 1.13 7.61 -2.39 -0.02 1.12 16 32 H 0.41 5.68 6.21 -92.71 -0.58 5.10 16 33 H 0.41 8.32 8.49 -92.70 -0.79 7.53 16 34 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.02 0.95 7.20 -2.39 -0.02 0.93 16 39 H 0.02 0.88 7.57 -2.39 -0.02 0.87 16 40 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 41 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.08 1.05 6.02 -2.39 -0.01 1.03 16 44 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.09 0.72 5.72 -2.39 -0.01 0.70 16 47 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 Total: -1.00 -71.87 361.95 1.78 -70.09 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -0.47 Total: 16.63 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: 5.15 Total: -10.04 kcal Atomic # 7 Polarization: -93.61 SS G_CDS: -4.72 Total: -98.33 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.07 Total: -24.97 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.88 Total: 46.62 kcal Total: -71.87 1.78 -70.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454458255.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.181 kcal (2) G-P(sol) polarization free energy of solvation -71.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds