Wall clock time and date at job start Tue Mar 31 2020 06:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34777 * 120.00313 * 2 1 4 4 O 1.21583 * 120.00057 * 179.97438 * 3 2 1 5 5 N 1.34780 * 119.99567 * 0.02562 * 3 2 1 6 6 C 1.46497 * 119.99686 * 180.02562 * 5 3 2 7 7 C 1.53006 * 109.46851 * 179.97438 * 6 5 3 8 8 C 1.53002 * 109.46911 * 299.99563 * 7 6 5 9 9 C 1.52997 * 109.47299 * 59.99662 * 7 6 5 10 10 C 1.50702 * 109.46714 * 179.97438 * 7 6 5 11 11 H 1.07997 * 120.00162 * 357.00325 * 10 7 6 12 12 C 1.37876 * 119.99715 * 177.00663 * 10 7 6 13 13 N 1.31522 * 120.00142 * 5.54182 * 12 10 7 14 14 Si 1.86798 * 120.00070 * 185.53586 * 12 10 7 15 15 H 1.48503 * 109.47147 * 85.00088 * 14 12 10 16 16 H 1.48504 * 109.47323 * 205.00254 * 14 12 10 17 17 H 1.48502 * 109.47071 * 325.00011 * 14 12 10 18 18 C 1.46507 * 120.00089 * 179.97438 * 2 1 3 19 19 C 1.52994 * 109.46717 * 59.99915 * 18 2 1 20 20 C 1.53009 * 109.46988 * 179.97438 * 19 18 2 21 21 C 1.52997 * 109.46858 * 60.00659 * 20 19 18 22 22 C 1.53008 * 109.46912 * 299.99818 * 21 20 19 23 23 C 1.52998 * 109.47144 * 60.00068 * 22 21 20 24 24 H 1.08997 * 109.46963 * 269.99875 * 1 2 3 25 25 H 1.08993 * 109.46974 * 30.00473 * 1 2 3 26 26 H 1.09004 * 109.47054 * 150.00335 * 1 2 3 27 27 H 0.96997 * 120.00364 * 359.97438 * 5 3 2 28 28 H 1.08998 * 109.46792 * 299.99238 * 6 5 3 29 29 H 1.08995 * 109.47553 * 59.99512 * 6 5 3 30 30 H 1.08995 * 109.46862 * 53.93998 * 8 7 6 31 31 H 1.09001 * 109.46550 * 173.93992 * 8 7 6 32 32 H 1.09000 * 109.46892 * 293.93435 * 8 7 6 33 33 H 1.09008 * 109.46773 * 60.00069 * 9 7 6 34 34 H 1.08998 * 109.47187 * 179.97438 * 9 7 6 35 35 H 1.08996 * 109.46928 * 300.00232 * 9 7 6 36 36 H 0.97001 * 119.99812 * 179.97438 * 13 12 10 37 37 H 1.08997 * 109.47313 * 180.02562 * 18 2 1 38 38 H 1.09001 * 109.48165 * 299.99920 * 19 18 2 39 39 H 1.09007 * 109.47421 * 60.00382 * 19 18 2 40 40 H 1.08997 * 109.47311 * 300.00513 * 20 19 18 41 41 H 1.09002 * 109.46786 * 179.97438 * 20 19 18 42 42 H 1.09001 * 109.47404 * 179.97438 * 21 20 19 43 43 H 1.09005 * 109.47578 * 59.99735 * 21 20 19 44 44 H 1.08997 * 109.47163 * 300.00088 * 22 21 20 45 45 H 1.08995 * 109.47190 * 180.02562 * 22 21 20 46 46 H 1.08998 * 109.47465 * 179.97438 * 23 22 21 47 47 H 1.09005 * 109.47005 * 60.00291 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3548 1.1671 0.0005 5 7 1.4651 2.3344 0.0005 6 6 2.1976 3.6031 0.0000 7 6 1.2033 4.7660 0.0001 8 6 0.3233 4.6847 -1.2489 9 6 0.3241 4.6852 1.2496 10 6 1.9569 6.0711 0.0001 11 1 3.0358 6.0717 0.0490 12 6 1.2689 7.2643 -0.0621 13 7 -0.0453 7.2691 -0.0115 14 14 2.2034 8.8742 -0.2181 15 1 2.5029 9.1361 -1.6488 16 1 1.3763 9.9814 0.3253 17 1 3.4741 8.7849 0.5453 18 6 2.1976 -1.2688 0.0006 19 6 1.8279 -2.0715 -1.2483 20 6 2.5934 -3.3964 -1.2481 21 6 2.2243 -4.1984 0.0014 22 6 2.5939 -3.3956 1.2504 23 6 1.8285 -2.0708 1.2501 24 1 -0.3633 0.0000 1.0276 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 0.4951 2.3344 0.0005 28 1 2.8248 3.6608 0.8895 29 1 2.8236 3.6608 -0.8904 30 1 -0.1384 3.6989 -1.3044 31 1 -0.4536 5.4474 -1.1961 32 1 0.9351 4.8500 -2.1357 33 1 0.9512 4.7432 2.1394 34 1 -0.3839 5.5140 1.2499 35 1 -0.2208 3.7413 1.2500 36 1 -0.5292 8.1087 -0.0550 37 1 3.2692 -1.0696 0.0009 38 1 0.7563 -2.2708 -1.2483 39 1 2.0913 -1.5004 -2.1386 40 1 3.6650 -3.1968 -1.2483 41 1 2.3297 -3.9685 -2.1376 42 1 2.7692 -5.1424 0.0014 43 1 1.1527 -4.3979 0.0017 44 1 3.6655 -3.1960 1.2502 45 1 2.3313 -3.9671 2.1406 46 1 2.0914 -1.4990 2.1401 47 1 0.7569 -2.2703 1.2505 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458015775.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:44 Heat of formation + Delta-G solvation = -51.686753 kcal Electronic energy + Delta-G solvation = -23409.649905 eV Core-core repulsion = 20205.574484 eV Total energy + Delta-G solvation = -3204.075421 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.15929 -38.28173 -36.33199 -34.80402 -33.19404 -30.93631 -30.92063 -29.49593 -26.76969 -25.70669 -25.53525 -24.74162 -22.75475 -22.33572 -20.04340 -19.28383 -18.81531 -17.73120 -16.38900 -15.80388 -15.34197 -15.14119 -14.72012 -14.31679 -14.31413 -13.96964 -13.56678 -13.44303 -12.90478 -12.81013 -12.56167 -12.49576 -12.37106 -12.30957 -12.02607 -11.40598 -11.28881 -11.24853 -11.16552 -10.84357 -10.80405 -10.67352 -10.42348 -10.39616 -10.33747 -10.18863 -9.64776 -9.59615 -9.26889 -8.77184 -8.59262 -8.37096 -8.07778 -6.00589 -4.09075 2.99206 3.30663 3.36910 3.41035 3.65637 4.36265 4.47331 4.56568 4.62942 4.75776 4.99535 5.07506 5.10623 5.26577 5.29871 5.33123 5.35490 5.47631 5.53170 5.57961 5.70448 5.85550 5.86270 5.95097 5.96855 6.05465 6.20632 6.22753 6.30345 6.40388 6.53608 6.71548 6.84057 6.84896 6.96163 7.05822 7.14636 7.31956 7.42655 7.58304 7.72570 8.01962 8.14259 8.40130 8.48237 8.90550 9.08952 9.56171 11.01538 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.041510 B = 0.003315 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.377812 B = 8444.036898 C = 8590.056091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.635 5.635 3 C 0.699 3.301 4 O -0.599 6.599 5 N -0.733 5.733 6 C 0.149 3.851 7 C 0.056 3.944 8 C -0.127 4.127 9 C -0.129 4.129 10 C -0.506 4.506 11 H 0.058 0.942 12 C 0.067 3.933 13 N -0.886 5.886 14 Si 0.893 3.107 15 H -0.280 1.280 16 H -0.288 1.288 17 H -0.275 1.275 18 C 0.158 3.842 19 C -0.128 4.128 20 C -0.116 4.116 21 C -0.120 4.120 22 C -0.117 4.117 23 C -0.127 4.127 24 H 0.052 0.948 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.394 0.606 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.005 0.995 31 H 0.081 0.919 32 H 0.029 0.971 33 H 0.026 0.974 34 H 0.085 0.915 35 H 0.004 0.996 36 H 0.259 0.741 37 H 0.101 0.899 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.679 -20.051 -0.126 20.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.372 5.372 3 C 0.401 3.599 4 O -0.479 6.479 5 N -0.388 5.388 6 C 0.026 3.974 7 C 0.055 3.945 8 C -0.185 4.185 9 C -0.186 4.186 10 C -0.545 4.545 11 H 0.076 0.924 12 C -0.134 4.134 13 N -0.525 5.525 14 Si 0.721 3.279 15 H -0.206 1.206 16 H -0.214 1.214 17 H -0.200 1.200 18 C 0.054 3.946 19 C -0.167 4.167 20 C -0.154 4.154 21 C -0.157 4.157 22 C -0.155 4.155 23 C -0.166 4.166 24 H 0.070 0.930 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.230 0.770 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.024 0.976 31 H 0.099 0.901 32 H 0.048 0.952 33 H 0.045 0.955 34 H 0.104 0.896 35 H 0.023 0.977 36 H 0.070 0.930 37 H 0.119 0.881 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.945 -19.847 -0.124 19.870 hybrid contribution -0.162 0.934 -0.096 0.953 sum -1.107 -18.912 -0.221 18.946 Atomic orbital electron populations 1.21649 0.80601 1.02735 1.01478 1.47071 1.05930 1.04864 1.79355 1.16025 0.85408 0.80536 0.77967 1.90855 1.11755 1.86294 1.58961 1.45658 1.10075 1.05093 1.78007 1.21567 0.95000 0.80522 1.00298 1.18361 0.91944 0.91416 0.92752 1.21790 1.00903 0.97952 0.97846 1.21832 1.00195 0.98949 0.97655 1.20980 0.93015 0.89769 1.50737 0.92394 1.24876 0.94871 0.98898 0.94800 1.69832 1.05942 1.26335 1.50345 0.86596 0.79871 0.83091 0.78359 1.20635 1.21363 1.19951 1.20869 0.98230 0.81640 0.93849 1.21906 1.00417 0.96047 0.98321 1.21496 1.00574 0.95572 0.97796 1.21560 1.01248 0.98219 0.94713 1.21498 1.00570 0.95610 0.97789 1.21892 1.00416 0.95968 0.98294 0.92959 0.91431 0.91126 0.76972 0.93013 0.93005 0.97647 0.90056 0.95195 0.95473 0.89638 0.97718 0.93046 0.88107 0.91821 0.91580 0.91683 0.91867 0.92068 0.92063 0.91705 0.91874 0.91619 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.87 9.26 59.85 0.55 1.42 16 2 N -0.63 -9.09 2.76 -179.67 -0.50 -9.59 16 3 C 0.70 13.19 8.28 -86.91 -0.72 12.47 16 4 O -0.60 -13.51 15.67 5.29 0.08 -13.43 16 5 N -0.73 -13.86 4.77 -65.23 -0.31 -14.17 16 6 C 0.15 3.30 4.50 -4.04 -0.02 3.28 16 7 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 8 C -0.13 -2.90 8.03 37.16 0.30 -2.60 16 9 C -0.13 -2.94 8.11 37.16 0.30 -2.64 16 10 C -0.51 -13.46 8.01 -34.44 -0.28 -13.73 16 11 H 0.06 1.56 7.75 -52.49 -0.41 1.15 16 12 C 0.07 1.77 5.13 -17.82 -0.09 1.68 16 13 N -0.89 -23.77 9.45 55.43 0.52 -23.25 16 14 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 15 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 18 C 0.16 1.97 2.52 -67.93 -0.17 1.80 16 19 C -0.13 -1.31 5.18 -26.73 -0.14 -1.45 16 20 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 21 C -0.12 -0.91 5.92 -26.73 -0.16 -1.06 16 22 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 23 C -0.13 -1.31 5.21 -26.73 -0.14 -1.45 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.76 6.36 -51.93 -0.33 0.43 16 26 H 0.07 0.62 6.43 -51.93 -0.33 0.28 16 27 H 0.39 6.74 3.89 -40.82 -0.16 6.58 16 28 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.00 0.09 6.71 -51.93 -0.35 -0.26 16 31 H 0.08 2.02 6.25 -51.93 -0.32 1.70 16 32 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.03 0.62 8.14 -51.92 -0.42 0.19 16 34 H 0.08 2.15 6.10 -51.93 -0.32 1.83 16 35 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 36 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 37 H 0.10 1.52 6.90 -51.93 -0.36 1.17 16 38 H 0.06 0.58 6.66 -51.93 -0.35 0.23 16 39 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 47 H 0.06 0.59 7.67 -51.93 -0.40 0.19 16 LS Contribution 351.76 15.07 5.30 5.30 Total: -1.00 -29.22 351.76 -9.18 -38.41 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -8.31 Total: 4.15 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -0.95 Total: -3.31 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: -0.28 Total: -47.00 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: 0.08 Total: -13.43 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.22 -9.18 -38.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458015775.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.281 kcal (2) G-P(sol) polarization free energy of solvation -29.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds