Wall clock time and date at job start Tue Mar 31 2020 06:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.47285 * 2 1 4 4 C 1.52999 * 109.47380 * 120.00195 * 2 1 3 5 5 H 1.09000 * 112.73788 * 309.05691 * 4 2 1 6 6 N 1.47066 * 113.46707 * 79.79877 * 4 2 1 7 7 C 1.34774 * 136.05842 * 321.92349 * 6 4 2 8 8 O 1.21587 * 119.99933 * 354.91857 * 7 6 4 9 9 N 1.34773 * 120.00405 * 174.91965 * 7 6 4 10 10 C 1.46500 * 120.00428 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.47415 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47325 * 179.97438 * 11 10 9 13 13 C 1.50693 * 109.47308 * 180.02562 * 12 11 10 14 14 H 1.08007 * 119.99950 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00134 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00290 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 120.00060 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46916 * 90.00168 * 17 15 13 19 19 H 1.48498 * 109.47116 * 210.00376 * 17 15 13 20 20 H 1.48497 * 109.46972 * 330.00314 * 17 15 13 21 21 C 1.47069 * 87.88384 * 142.18240 * 6 4 2 22 22 C 1.53499 * 113.52065 * 178.25903 * 4 2 1 23 23 C 1.52994 * 114.20963 * 332.73449 * 22 4 2 24 24 C 1.52998 * 114.20371 * 105.36118 * 22 4 2 25 25 H 1.09003 * 109.46635 * 306.48186 * 1 2 3 26 26 H 1.08992 * 109.47128 * 66.48127 * 1 2 3 27 27 H 1.08992 * 109.46677 * 186.48611 * 1 2 3 28 28 H 1.09003 * 109.47162 * 240.00636 * 2 1 3 29 29 H 1.08993 * 109.47177 * 180.02562 * 3 2 1 30 30 H 1.08994 * 109.47012 * 300.00454 * 3 2 1 31 31 H 1.09003 * 109.46501 * 60.00231 * 3 2 1 32 32 H 0.97001 * 119.99941 * 359.97438 * 9 7 6 33 33 H 1.09006 * 109.46780 * 60.00196 * 10 9 7 34 34 H 1.09001 * 109.47137 * 300.00166 * 10 9 7 35 35 H 1.09001 * 109.47424 * 300.00383 * 11 10 9 36 36 H 1.09005 * 109.46293 * 60.00129 * 11 10 9 37 37 H 1.09001 * 109.47338 * 300.00626 * 12 11 10 38 38 H 1.09002 * 109.46781 * 60.00212 * 12 11 10 39 39 H 0.97002 * 120.00492 * 179.97438 * 16 15 13 40 40 H 1.08997 * 113.47077 * 87.44106 * 21 6 4 41 41 H 1.09001 * 113.46382 * 217.87776 * 21 6 4 42 42 H 1.09000 * 109.47467 * 59.99617 * 23 22 4 43 43 H 1.08998 * 109.47306 * 180.02562 * 23 22 4 44 44 H 1.09007 * 109.47085 * 299.99917 * 23 22 4 45 45 H 1.08998 * 109.47464 * 59.99782 * 24 22 4 46 46 H 1.09009 * 109.47376 * 179.97438 * 24 22 4 47 47 H 1.09000 * 109.46982 * 299.99561 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.5834 -0.3494 2.1664 6 7 2.0101 -2.1870 1.1324 7 6 1.1810 -3.1005 0.5897 8 8 0.1217 -2.7493 0.1072 9 7 1.5261 -4.4033 0.5818 10 6 0.6246 -5.3963 -0.0076 11 6 1.2501 -6.7876 0.1120 12 6 0.3083 -7.8247 -0.5030 13 6 0.9240 -9.1950 -0.3846 14 1 1.8903 -9.3143 0.0830 15 6 0.2535 -10.2966 -0.8723 16 7 -0.9233 -10.1515 -1.4412 17 14 1.0164 -11.9954 -0.7248 18 1 0.5967 -12.6170 0.5568 19 1 0.5627 -12.8418 -1.8575 20 1 2.4964 -11.8777 -0.7566 21 6 3.2796 -2.2176 1.8743 22 6 3.5706 -0.8126 1.3218 23 6 4.2652 -0.8009 -0.0413 24 6 4.2086 0.1412 2.3338 25 1 -0.3633 0.6110 0.8263 26 1 -0.3633 0.4101 -0.9422 27 1 -0.3632 -1.0210 0.1161 28 1 1.8934 -0.5137 -0.8901 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 2.3713 -4.6835 0.9665 33 1 0.4623 -5.1606 -1.0594 34 1 -0.3291 -5.3797 0.5199 35 1 2.2036 -6.8039 -0.4157 36 1 1.4127 -7.0234 1.1637 37 1 -0.6451 -7.8083 0.0251 38 1 0.1452 -7.5889 -1.5546 39 1 -1.3950 -10.9264 -1.7846 40 1 3.1497 -2.2403 2.9563 41 1 3.9731 -2.9785 1.5165 42 1 4.0247 0.1250 -0.5638 43 1 5.3439 -0.8691 0.0999 44 1 3.9219 -1.6507 -0.6314 45 1 3.8275 -0.0790 3.3309 46 1 5.2910 0.0124 2.3222 47 1 3.9619 1.1695 2.0694 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458289487.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:44 Heat of formation + Delta-G solvation = -16.864576 kcal Electronic energy + Delta-G solvation = -22869.164567 eV Core-core repulsion = 19666.599149 eV Total energy + Delta-G solvation = -3202.565418 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.29447 -38.61948 -35.35648 -34.71330 -33.22853 -32.62713 -31.04188 -27.95158 -27.45554 -26.86756 -26.03150 -25.66976 -22.86078 -20.74904 -20.61285 -19.91462 -18.62323 -17.69514 -16.51686 -16.06458 -15.75947 -15.25579 -14.88850 -14.64064 -14.43819 -14.37493 -13.88902 -13.62492 -13.25282 -12.89572 -12.60828 -12.36249 -12.27962 -12.26452 -12.06061 -11.87701 -11.77886 -11.71063 -11.53661 -11.43361 -10.93706 -10.89391 -10.71290 -10.68954 -10.56184 -9.99993 -9.84483 -9.62237 -9.33794 -9.11081 -8.92043 -8.43384 -8.36240 -6.00845 -4.03947 2.56003 3.31234 3.37487 3.37812 3.40372 3.86107 4.05979 4.45083 4.52158 4.60761 4.80421 4.82280 4.90595 5.04752 5.22450 5.25522 5.30271 5.34859 5.42817 5.45122 5.58026 5.58950 5.63312 5.68612 5.71497 5.75272 5.82243 5.83561 5.88296 6.03365 6.06916 6.13312 6.20748 6.36088 6.45481 6.64227 6.77492 6.94875 7.09895 7.37375 7.64972 7.78055 7.98130 8.20361 8.39252 8.86802 9.02753 9.60129 11.10470 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031063 B = 0.002905 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.186383 B = 9636.401230 C =10212.142497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.094 4.094 3 C -0.148 4.148 4 C 0.168 3.832 5 H 0.085 0.915 6 N -0.663 5.663 7 C 0.731 3.269 8 O -0.580 6.580 9 N -0.739 5.739 10 C 0.136 3.864 11 C -0.120 4.120 12 C 0.024 3.976 13 C -0.522 4.522 14 H 0.055 0.945 15 C 0.057 3.943 16 N -0.894 5.894 17 Si 0.893 3.107 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.104 3.896 22 C -0.098 4.098 23 C -0.129 4.129 24 C -0.135 4.135 25 H 0.040 0.960 26 H 0.044 0.956 27 H 0.109 0.891 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.392 0.608 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.261 0.739 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.062 0.938 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.646 23.463 7.159 27.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.113 4.113 3 C -0.206 4.206 4 C 0.064 3.936 5 H 0.103 0.897 6 N -0.403 5.403 7 C 0.435 3.565 8 O -0.458 6.458 9 N -0.392 5.392 10 C 0.013 3.987 11 C -0.158 4.158 12 C -0.013 4.013 13 C -0.560 4.560 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.533 5.533 17 Si 0.721 3.279 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.019 4.019 22 C -0.099 4.099 23 C -0.186 4.186 24 C -0.192 4.192 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.127 0.873 28 H 0.093 0.907 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.225 0.775 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.037 0.963 38 H 0.038 0.962 39 H 0.071 0.929 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.081 0.919 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.524 23.395 6.589 26.486 hybrid contribution 0.681 -1.203 0.340 1.424 sum 11.205 22.192 6.930 25.808 Atomic orbital electron populations 1.22372 0.94292 1.06461 1.00234 1.21214 0.97194 0.95461 0.97455 1.21939 1.01052 0.95745 1.01815 1.22660 0.93344 0.79228 0.98373 0.89696 1.48710 1.25212 1.07257 1.59146 1.15337 0.82104 0.80178 0.78867 1.90697 1.23228 1.78443 1.53478 1.45346 1.24099 1.05095 1.64697 1.21511 0.92411 0.86911 0.97850 1.21885 1.00339 0.92515 1.01036 1.19021 0.94199 0.91970 0.96126 1.21205 1.04400 0.91927 1.38514 0.92678 1.25029 0.94931 0.99246 0.95259 1.69965 1.13612 1.30273 1.39427 0.86584 0.79478 0.84225 0.77646 1.20666 1.21198 1.19900 1.23132 0.85032 0.97054 0.96717 1.22312 0.94993 0.95491 0.97115 1.21656 0.99543 1.02962 0.94461 1.21689 1.00754 0.98980 0.97817 0.94097 0.93675 0.87262 0.90746 0.92090 0.92608 0.92762 0.77482 0.91974 0.91984 0.92831 0.92851 0.96261 0.96243 0.92924 0.90080 0.90667 0.91193 0.92185 0.92113 0.92177 0.91930 0.91794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.27 9.08 37.16 0.34 -1.93 16 2 C -0.09 -1.00 1.98 -90.62 -0.18 -1.18 16 3 C -0.15 -1.16 8.54 37.16 0.32 -0.84 16 4 C 0.17 1.67 2.93 -72.40 -0.21 1.46 16 5 H 0.09 0.82 8.10 -51.93 -0.42 0.40 16 6 N -0.66 -8.07 3.37 -182.95 -0.62 -8.69 16 7 C 0.73 11.82 8.67 -86.92 -0.75 11.07 16 8 O -0.58 -11.32 13.28 5.29 0.07 -11.25 16 9 N -0.74 -11.46 5.56 -65.22 -0.36 -11.82 16 10 C 0.14 2.50 5.67 -4.04 -0.02 2.48 16 11 C -0.12 -2.40 5.27 -26.73 -0.14 -2.54 16 12 C 0.02 0.63 4.97 -27.89 -0.14 0.49 16 13 C -0.52 -14.72 9.11 -34.44 -0.31 -15.03 16 14 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.89 -27.03 13.29 55.43 0.74 -26.30 16 17 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 21 C 0.10 0.88 7.42 -8.37 -0.06 0.82 16 22 C -0.10 -0.72 0.87 -153.86 -0.13 -0.86 16 23 C -0.13 -0.97 7.93 37.15 0.29 -0.67 16 24 C -0.13 -0.70 9.27 37.16 0.34 -0.36 16 25 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.11 1.80 4.21 -52.00 -0.22 1.58 16 28 H 0.07 0.92 7.27 -51.93 -0.38 0.54 16 29 H 0.06 0.40 4.95 -51.93 -0.26 0.14 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.39 5.12 8.20 -40.82 -0.33 4.79 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.08 0.59 7.94 -51.93 -0.41 0.18 16 41 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 42 H 0.07 0.50 5.21 -51.93 -0.27 0.23 16 43 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 44 H 0.06 0.58 7.90 -51.92 -0.41 0.17 16 45 H 0.06 0.29 7.90 -51.93 -0.41 -0.12 16 46 H 0.06 0.28 8.13 -51.92 -0.42 -0.14 16 47 H 0.06 0.31 7.41 -51.93 -0.38 -0.07 16 LS Contribution 364.48 15.07 5.49 5.49 Total: -1.00 -32.20 364.48 -8.99 -41.20 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -8.53 Total: 0.33 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -0.76 Total: -5.55 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: -0.24 Total: -46.80 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.07 Total: -11.25 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.20 -8.99 -41.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458289487.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.332 kcal (2) G-P(sol) polarization free energy of solvation -32.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds