Wall clock time and date at job start Tue Mar 31 2020 06:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47460 * 2 1 4 4 C 1.52997 * 109.46944 * 119.99980 * 2 1 3 5 5 H 1.09000 * 112.96795 * 288.11358 * 4 2 1 6 6 N 1.47583 * 113.87186 * 156.33603 * 4 2 1 7 7 C 1.34774 * 134.48866 * 41.05178 * 6 4 2 8 8 O 1.21582 * 120.00302 * 4.46451 * 7 6 4 9 9 N 1.34784 * 120.00014 * 184.47192 * 7 6 4 10 10 C 1.46493 * 120.00259 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47269 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47405 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.46884 * 180.02562 * 12 11 10 14 14 H 1.07993 * 120.00116 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99503 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99967 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99949 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.46991 * 59.99711 * 17 15 13 19 19 H 1.48493 * 109.47116 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47138 * 300.00008 * 17 15 13 21 21 C 1.47575 * 91.01722 * 221.04301 * 6 4 2 22 22 C 1.53948 * 86.11751 * 24.64133 * 21 6 4 23 23 C 1.52998 * 113.74440 * 222.04769 * 22 21 6 24 24 C 1.52997 * 113.74002 * 90.73274 * 22 21 6 25 25 H 1.09003 * 109.46910 * 66.19989 * 1 2 3 26 26 H 1.08997 * 109.47155 * 186.20170 * 1 2 3 27 27 H 1.09005 * 109.46967 * 306.20666 * 1 2 3 28 28 H 1.08998 * 109.47011 * 239.99693 * 2 1 3 29 29 H 1.08997 * 109.47076 * 174.79739 * 3 2 1 30 30 H 1.08994 * 109.46955 * 294.79798 * 3 2 1 31 31 H 1.09000 * 109.46946 * 54.79273 * 3 2 1 32 32 H 0.97002 * 119.99551 * 359.97438 * 9 7 6 33 33 H 1.09001 * 109.46952 * 299.99800 * 10 9 7 34 34 H 1.09002 * 109.47291 * 60.00197 * 10 9 7 35 35 H 1.09004 * 109.47171 * 300.00276 * 11 10 9 36 36 H 1.09000 * 109.47315 * 59.99938 * 11 10 9 37 37 H 1.08993 * 109.46736 * 300.00114 * 12 11 10 38 38 H 1.08993 * 109.46749 * 59.99955 * 12 11 10 39 39 H 0.97000 * 119.99919 * 180.02562 * 16 15 13 40 40 H 1.09002 * 113.77364 * 270.34072 * 21 6 4 41 41 H 1.09001 * 113.76899 * 138.94044 * 21 6 4 42 42 H 1.09001 * 109.47460 * 156.67321 * 23 22 21 43 43 H 1.09000 * 109.47134 * 276.67366 * 23 22 21 44 44 H 1.08998 * 109.47208 * 36.67021 * 23 22 21 45 45 H 1.09002 * 109.47591 * 317.66983 * 24 22 21 46 46 H 1.09009 * 109.46802 * 77.67156 * 24 22 21 47 47 H 1.09002 * 109.46951 * 197.66394 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.8876 -0.1477 2.1635 6 7 3.4045 -1.2659 1.1093 7 6 4.5490 -0.8160 0.5579 8 8 4.6015 0.3084 0.0983 9 7 5.6354 -1.6126 0.5158 10 6 6.8793 -1.1239 -0.0841 11 6 7.9480 -2.2159 -0.0033 12 6 9.2474 -1.7052 -0.6293 13 6 10.2997 -2.7811 -0.5502 14 1 10.0653 -3.7335 -0.0984 15 6 11.5620 -2.5489 -1.0539 16 7 11.8475 -1.3888 -1.6036 17 14 12.8667 -3.8821 -0.9553 18 1 12.4020 -5.0848 -1.6921 19 1 14.1277 -3.3865 -1.5629 20 1 13.1072 -4.2352 0.4669 21 6 3.0123 -2.5008 1.8157 22 6 1.5785 -2.1863 1.3518 23 6 0.5168 -2.4239 2.4275 24 6 1.2156 -2.8135 0.0042 25 1 -0.3633 0.4147 -0.9403 26 1 -0.3633 -1.0216 0.1110 27 1 -0.3633 0.6071 0.8293 28 1 1.8933 -0.5139 -0.8899 29 1 3.1261 1.4438 0.0932 30 1 1.7549 1.9287 -0.9329 31 1 1.6026 1.9825 0.8397 32 1 5.5936 -2.5096 0.8827 33 1 6.7021 -0.8650 -1.1279 34 1 7.2210 -0.2411 0.4564 35 1 8.1251 -2.4745 1.0407 36 1 7.6066 -3.0990 -0.5435 37 1 9.0706 -1.4463 -1.6731 38 1 9.5885 -0.8223 -0.0887 39 1 12.7355 -1.2256 -1.9583 40 1 3.1455 -2.4500 2.8964 41 1 3.4269 -3.4084 1.3770 42 1 -0.3644 -1.8212 2.2078 43 1 0.2418 -3.4786 2.4400 44 1 0.9167 -2.1413 3.4013 45 1 2.0526 -2.7029 -0.6853 46 1 0.9970 -3.8723 0.1434 47 1 0.3386 -2.3123 -0.4054 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458289488.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:49 Heat of formation + Delta-G solvation = -20.601392 kcal Electronic energy + Delta-G solvation = -22863.769675 eV Core-core repulsion = 19661.042217 eV Total energy + Delta-G solvation = -3202.727459 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.16772 -38.56809 -35.32693 -34.73445 -33.21810 -32.58714 -31.02051 -27.99069 -27.39156 -26.81537 -26.13802 -25.65420 -22.84103 -20.79557 -20.61686 -19.83256 -18.58284 -17.65119 -16.51538 -16.06777 -15.75473 -15.27031 -14.87588 -14.63447 -14.42414 -14.36892 -13.84358 -13.59415 -13.35379 -12.89294 -12.65896 -12.38509 -12.25724 -12.25467 -12.05868 -11.86278 -11.76022 -11.69735 -11.44509 -11.43255 -10.93015 -10.86896 -10.69310 -10.68371 -10.58642 -10.09386 -9.83527 -9.65713 -9.34556 -9.11716 -8.89005 -8.41372 -8.35585 -6.00360 -4.03535 2.55976 3.32689 3.37394 3.39292 3.41055 3.90461 4.05287 4.45399 4.51591 4.62522 4.79158 4.81401 4.89778 5.04865 5.21344 5.25649 5.28879 5.35201 5.42928 5.46299 5.56397 5.59919 5.63349 5.67372 5.71315 5.75361 5.82479 5.84515 5.87957 6.03362 6.07536 6.10989 6.21688 6.36099 6.46774 6.65103 6.75589 6.94177 7.09150 7.36682 7.65248 7.78662 7.98610 8.21576 8.39680 8.88257 9.02996 9.60427 11.10939 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030966 B = 0.002905 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.003960 B = 9636.189862 C =10210.758395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.092 4.092 3 C -0.170 4.170 4 C 0.171 3.829 5 H 0.086 0.914 6 N -0.661 5.661 7 C 0.724 3.276 8 O -0.583 6.583 9 N -0.740 5.740 10 C 0.136 3.864 11 C -0.120 4.120 12 C 0.025 3.975 13 C -0.523 4.523 14 H 0.054 0.946 15 C 0.057 3.943 16 N -0.894 5.894 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.105 3.895 22 C -0.095 4.095 23 C -0.138 4.138 24 C -0.134 4.134 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.103 0.897 30 H 0.045 0.955 31 H 0.041 0.959 32 H 0.392 0.608 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.262 0.738 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.060 0.940 46 H 0.059 0.941 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.089 -2.365 7.516 27.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.111 4.111 3 C -0.227 4.227 4 C 0.067 3.933 5 H 0.104 0.896 6 N -0.401 5.401 7 C 0.428 3.572 8 O -0.461 6.461 9 N -0.393 5.393 10 C 0.013 3.987 11 C -0.158 4.158 12 C -0.013 4.013 13 C -0.561 4.561 14 H 0.073 0.927 15 C -0.144 4.144 16 N -0.533 5.533 17 Si 0.721 3.279 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.018 4.018 22 C -0.096 4.096 23 C -0.195 4.195 24 C -0.191 4.191 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.093 0.907 29 H 0.121 0.879 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.225 0.775 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.071 0.929 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.078 0.922 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -25.643 -1.335 6.973 26.608 hybrid contribution 0.905 -1.106 0.287 1.458 sum -24.738 -2.441 7.260 25.896 Atomic orbital electron populations 1.22030 0.94948 1.02051 1.01872 1.21176 0.95181 0.97387 0.97370 1.22249 1.05981 0.94192 1.00304 1.22803 0.78183 0.94112 0.98193 0.89625 1.49149 1.09345 1.21240 1.60384 1.15534 0.78768 0.84029 0.78911 1.90738 1.82498 1.18626 1.54274 1.45356 1.11461 1.17479 1.65053 1.21495 0.81401 0.98118 0.97669 1.21885 0.96218 0.96632 1.01039 1.19015 0.89560 0.96656 0.96046 1.21170 0.96074 0.99993 1.38892 0.92727 1.25028 0.98584 0.95537 0.95295 1.69958 1.21310 1.22505 1.39515 0.86642 0.80938 0.82028 0.78284 1.20255 1.21262 1.20254 1.23276 0.92543 0.88731 0.97240 1.22461 0.94403 0.95741 0.97023 1.21741 0.98197 1.02145 0.97457 1.21771 1.02378 1.00098 0.94836 0.92575 0.91685 0.92750 0.90684 0.87888 0.93565 0.93945 0.77531 0.92021 0.92036 0.92862 0.92854 0.96263 0.96265 0.92867 0.90031 0.90330 0.91873 0.91982 0.92184 0.92049 0.92240 0.90990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 8.71 37.16 0.32 -0.84 16 2 C -0.09 -0.97 2.00 -90.62 -0.18 -1.15 16 3 C -0.17 -2.14 9.09 37.16 0.34 -1.80 16 4 C 0.17 1.71 3.15 -66.86 -0.21 1.50 16 5 H 0.09 0.84 8.10 -51.93 -0.42 0.41 16 6 N -0.66 -8.05 3.33 -176.17 -0.59 -8.64 16 7 C 0.72 11.77 8.64 -86.91 -0.75 11.02 16 8 O -0.58 -11.46 13.44 5.29 0.07 -11.39 16 9 N -0.74 -11.55 5.56 -65.23 -0.36 -11.92 16 10 C 0.14 2.52 5.67 -4.05 -0.02 2.50 16 11 C -0.12 -2.41 5.27 -26.73 -0.14 -2.55 16 12 C 0.02 0.64 4.97 -27.88 -0.14 0.50 16 13 C -0.52 -14.77 9.11 -34.44 -0.31 -15.09 16 14 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -27.08 13.29 55.43 0.74 -26.35 16 17 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 C 0.11 0.89 7.57 -2.98 -0.02 0.87 16 22 C -0.10 -0.70 0.80 -153.58 -0.12 -0.82 16 23 C -0.14 -0.73 9.16 37.16 0.34 -0.39 16 24 C -0.13 -0.98 7.80 37.16 0.29 -0.69 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.42 4.36 -51.93 -0.23 0.19 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.93 7.22 -51.93 -0.37 0.55 16 29 H 0.10 1.68 4.52 -51.93 -0.23 1.44 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.39 5.14 8.08 -40.82 -0.33 4.81 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 40 H 0.08 0.59 7.96 -51.93 -0.41 0.18 16 41 H 0.08 0.61 8.09 -51.93 -0.42 0.19 16 42 H 0.06 0.31 7.55 -51.93 -0.39 -0.08 16 43 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.06 0.30 7.94 -51.93 -0.41 -0.11 16 45 H 0.06 0.58 7.64 -51.93 -0.40 0.18 16 46 H 0.06 0.37 8.14 -51.92 -0.42 -0.06 16 47 H 0.07 0.48 5.12 -51.93 -0.27 0.22 16 LS Contribution 364.19 15.07 5.49 5.49 Total: -1.00 -32.37 364.19 -8.89 -41.25 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -8.50 Total: 0.33 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -0.71 Total: -5.41 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: -0.21 Total: -46.90 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.07 Total: -11.39 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.37 -8.89 -41.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458289488.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.651 kcal (2) G-P(sol) polarization free energy of solvation -32.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds