Wall clock time and date at job start Tue Mar 31 2020 06:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47187 * 2 1 4 4 C 1.53000 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47281 * 305.00527 * 4 3 2 6 6 N 1.46505 * 109.46635 * 64.99836 * 4 3 2 7 7 C 1.34778 * 119.99671 * 204.99486 * 6 4 3 8 8 O 1.21588 * 120.00171 * 0.02562 * 7 6 4 9 9 N 1.34777 * 119.99790 * 179.97438 * 7 6 4 10 10 C 1.46503 * 119.99849 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.47173 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47341 * 180.02562 * 11 10 9 13 13 C 1.50692 * 109.47315 * 180.02562 * 12 11 10 14 14 H 1.08007 * 120.00274 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00481 * 179.97438 * 13 12 11 16 16 N 1.31522 * 119.99683 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00428 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46849 * 60.00088 * 17 15 13 19 19 H 1.48504 * 109.47282 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47266 * 299.99797 * 17 15 13 21 21 C 1.52994 * 109.47387 * 184.99610 * 4 3 2 22 22 C 1.53782 * 113.61734 * 180.02562 * 21 4 3 23 23 C 1.53781 * 87.08260 * 220.02231 * 22 21 4 24 24 C 1.53786 * 87.17350 * 25.39213 * 23 22 21 25 25 H 1.09002 * 109.46943 * 299.99882 * 1 2 3 26 26 H 1.08995 * 109.47108 * 59.99596 * 1 2 3 27 27 H 1.08997 * 109.47127 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46943 * 240.00118 * 2 1 3 29 29 H 1.09003 * 109.47325 * 120.00235 * 2 1 3 30 30 H 1.09002 * 109.47083 * 60.00203 * 3 2 1 31 31 H 1.09003 * 109.47179 * 300.00324 * 3 2 1 32 32 H 0.97001 * 120.00318 * 25.00859 * 6 4 3 33 33 H 0.97001 * 120.00373 * 0.02562 * 9 7 6 34 34 H 1.08994 * 109.47240 * 300.00478 * 10 9 7 35 35 H 1.09003 * 109.46886 * 60.00912 * 10 9 7 36 36 H 1.09009 * 109.46844 * 300.00412 * 11 10 9 37 37 H 1.09001 * 109.47214 * 59.99895 * 11 10 9 38 38 H 1.09007 * 109.46684 * 300.00125 * 12 11 10 39 39 H 1.09001 * 109.47478 * 59.99535 * 12 11 10 40 40 H 0.96999 * 119.99870 * 179.97438 * 16 15 13 41 41 H 1.09002 * 112.84929 * 311.20124 * 21 4 3 42 42 H 1.09001 * 113.61250 * 105.47049 * 22 21 4 43 43 H 1.08997 * 113.61225 * 334.56890 * 22 21 4 44 44 H 1.09002 * 113.61445 * 139.98212 * 23 22 21 45 45 H 1.09002 * 113.61408 * 270.79943 * 23 22 21 46 46 H 1.08993 * 113.61491 * 89.15923 * 24 23 22 47 47 H 1.09000 * 113.61138 * 220.06261 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8531 0.8426 6 7 4.0588 0.8585 -1.2509 7 6 5.2808 0.2920 -1.2981 8 8 5.9774 0.2652 -0.3019 9 7 5.7303 -0.2457 -2.4494 10 6 7.0584 -0.8620 -2.5005 11 6 7.3215 -1.3902 -3.9122 12 6 8.7082 -2.0344 -3.9655 13 6 8.9676 -2.5540 -5.3560 14 1 8.2181 -2.4369 -6.1249 15 6 10.1616 -3.1789 -5.6470 16 7 11.0745 -3.3210 -4.7109 17 14 10.4829 -3.8237 -7.3705 18 1 10.4210 -2.6997 -8.3390 19 1 11.8294 -4.4478 -7.4226 20 1 9.4539 -4.8357 -7.7202 21 6 4.0800 2.8794 0.1263 22 6 5.6138 2.9902 0.1359 23 6 5.4507 4.0671 1.2215 24 6 4.1111 3.3996 1.5750 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.5030 0.8797 -2.0457 33 1 5.1744 -0.2247 -3.2441 34 1 7.8137 -0.1192 -2.2443 35 1 7.1038 -1.6868 -1.7894 36 1 6.5660 -2.1329 -4.1689 37 1 7.2761 -0.5652 -4.6232 38 1 9.4638 -1.2918 -3.7087 39 1 8.7532 -2.8594 -3.2546 40 1 11.9145 -3.7610 -4.9155 41 1 3.5976 3.5624 -0.5730 42 1 6.0300 3.3702 -0.7971 43 1 6.1144 2.0881 0.4876 44 1 6.1940 4.0022 2.0162 45 1 5.3441 5.0761 0.8231 46 1 4.2002 2.6098 2.3207 47 1 3.3160 4.1098 1.8020 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458301788.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:39 Heat of formation + Delta-G solvation = -49.115896 kcal Electronic energy + Delta-G solvation = -22317.299732 eV Core-core repulsion = 19113.335792 eV Total energy + Delta-G solvation = -3203.963940 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.35114 -38.54227 -36.13568 -35.23126 -33.52506 -33.14247 -31.17084 -29.43612 -26.55390 -25.82139 -25.44829 -23.24093 -22.17506 -21.16687 -20.73688 -20.33546 -19.46282 -17.91354 -16.65257 -16.18206 -15.78826 -15.46317 -15.14020 -14.77683 -14.55711 -14.33675 -13.94265 -13.72797 -13.62340 -13.09083 -12.41681 -12.35376 -12.24497 -12.15405 -11.84017 -11.80868 -11.64233 -11.58270 -11.22779 -10.94242 -10.86971 -10.79411 -10.68528 -10.60071 -10.38391 -10.14778 -9.90530 -9.82425 -9.40553 -9.11869 -8.92423 -8.52061 -8.35483 -6.00328 -4.03455 2.89736 3.32753 3.37504 3.39419 3.44092 4.28571 4.42718 4.47807 4.60772 4.70533 4.72590 4.78658 4.84632 4.97944 5.15082 5.30626 5.33866 5.35262 5.43965 5.52898 5.60212 5.68280 5.73431 5.79805 5.81788 5.84556 5.84976 5.86737 5.96863 6.06466 6.11082 6.21865 6.26362 6.50905 6.59973 6.65613 6.70824 6.87256 7.06313 7.16567 7.65359 7.78838 7.98731 8.24305 8.39760 8.86031 9.03137 9.60540 11.10961 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021782 B = 0.002837 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.147456 B = 9865.760065 C =10810.055247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.125 4.125 4 C 0.174 3.826 5 H 0.088 0.912 6 N -0.744 5.744 7 C 0.702 3.298 8 O -0.589 6.589 9 N -0.743 5.743 10 C 0.136 3.864 11 C -0.120 4.120 12 C 0.025 3.975 13 C -0.523 4.523 14 H 0.054 0.946 15 C 0.057 3.943 16 N -0.894 5.894 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.124 4.124 22 C -0.139 4.139 23 C -0.146 4.146 24 C -0.130 4.130 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.392 0.608 33 H 0.392 0.608 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.262 0.738 41 H 0.083 0.917 42 H 0.054 0.946 43 H 0.113 0.887 44 H 0.064 0.936 45 H 0.072 0.928 46 H 0.081 0.919 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.787 12.575 10.249 26.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.163 4.163 4 C 0.068 3.932 5 H 0.106 0.894 6 N -0.399 5.399 7 C 0.402 3.598 8 O -0.468 6.468 9 N -0.397 5.397 10 C 0.013 3.987 11 C -0.158 4.158 12 C -0.013 4.013 13 C -0.561 4.561 14 H 0.073 0.927 15 C -0.144 4.144 16 N -0.533 5.533 17 Si 0.721 3.279 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.143 4.143 22 C -0.177 4.177 23 C -0.184 4.184 24 C -0.168 4.168 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.225 0.775 33 H 0.225 0.775 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.071 0.929 41 H 0.102 0.898 42 H 0.073 0.927 43 H 0.131 0.869 44 H 0.083 0.917 45 H 0.091 0.909 46 H 0.100 0.900 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.928 12.452 11.211 26.036 hybrid contribution -0.274 -0.285 -1.810 1.853 sum -20.202 12.167 9.400 25.388 Atomic orbital electron populations 1.21776 0.95926 1.01630 1.01616 1.21530 0.95573 0.96573 1.02598 1.21902 0.94151 0.97405 1.02854 1.20852 0.92587 0.92820 0.86892 0.89431 1.45179 1.17389 1.63692 1.13644 1.15986 0.81511 0.78269 0.84037 1.90821 1.57299 1.64278 1.34419 1.45395 1.20370 1.62888 1.11086 1.21474 0.81118 0.96792 0.99320 1.21885 1.01538 0.99638 0.92763 1.19015 0.89416 0.95674 0.97201 1.21174 1.01297 1.37568 0.96083 0.92734 1.25029 0.96229 0.96105 0.97087 1.69960 1.07181 1.43328 1.32825 0.86646 0.77333 0.79149 0.84782 1.20263 1.21269 1.20255 1.23020 0.97720 0.96260 0.97350 1.23211 0.95444 1.00472 0.98527 1.22823 0.97598 0.98334 0.99600 1.22882 0.97659 1.00030 0.96205 0.92851 0.92842 0.92796 0.91764 0.91904 0.90464 0.91583 0.77524 0.77484 0.92052 0.92062 0.92851 0.92845 0.96277 0.96278 0.92874 0.89825 0.92683 0.86856 0.91710 0.90905 0.90048 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.16 0.37 -0.60 16 2 C -0.13 -0.93 5.82 -26.73 -0.16 -1.09 16 3 C -0.13 -0.88 4.75 -26.73 -0.13 -1.00 16 4 C 0.17 1.68 1.94 -67.93 -0.13 1.54 16 5 H 0.09 1.05 7.38 -51.93 -0.38 0.66 16 6 N -0.74 -7.82 4.49 -58.68 -0.26 -8.08 16 7 C 0.70 10.33 7.85 -86.92 -0.68 9.64 16 8 O -0.59 -10.85 13.13 5.29 0.07 -10.78 16 9 N -0.74 -10.70 5.56 -65.22 -0.36 -11.06 16 10 C 0.14 2.43 5.67 -4.04 -0.02 2.41 16 11 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 12 C 0.02 0.63 4.97 -27.89 -0.14 0.49 16 13 C -0.52 -14.68 9.11 -34.45 -0.31 -14.99 16 14 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.89 -26.97 13.29 55.43 0.74 -26.24 16 17 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 C -0.12 -1.19 3.32 -89.71 -0.30 -1.49 16 22 C -0.14 -1.71 6.51 -25.92 -0.17 -1.88 16 23 C -0.15 -1.46 8.08 -25.92 -0.21 -1.67 16 24 C -0.13 -1.15 7.65 -25.82 -0.20 -1.34 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.52 7.75 -51.93 -0.40 0.12 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.39 3.15 8.62 -40.82 -0.35 2.80 16 33 H 0.39 4.56 8.49 -40.82 -0.35 4.21 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.05 1.01 8.14 -51.92 -0.42 0.59 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.02 0.52 8.14 -51.92 -0.42 0.09 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.11 1.75 5.41 -51.93 -0.28 1.47 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.08 0.74 7.97 -51.93 -0.41 0.32 16 47 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 373.73 15.07 5.63 5.63 Total: -1.00 -31.67 373.73 -10.43 -42.10 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -8.91 Total: 2.83 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -2.32 Total: -10.95 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: 0.11 Total: -45.38 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.07 Total: -10.78 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.67 -10.43 -42.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458301788.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.012 kcal (2) G-P(sol) polarization free energy of solvation -31.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds