Wall clock time and date at job start Tue Mar 31 2020 06:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47187 * 2 1 4 4 C 1.53000 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47281 * 305.00527 * 4 3 2 6 6 N 1.46505 * 109.46635 * 64.99836 * 4 3 2 7 7 C 1.34778 * 119.99671 * 204.99486 * 6 4 3 8 8 O 1.21588 * 120.00171 * 0.02562 * 7 6 4 9 9 N 1.34777 * 119.99790 * 179.97438 * 7 6 4 10 10 C 1.46503 * 119.99849 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.47173 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47341 * 180.02562 * 11 10 9 13 13 C 1.50692 * 109.47315 * 180.02562 * 12 11 10 14 14 H 1.08007 * 120.00274 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00481 * 179.97438 * 13 12 11 16 16 N 1.31522 * 119.99683 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00428 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46849 * 60.00088 * 17 15 13 19 19 H 1.48504 * 109.47282 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47266 * 299.99797 * 17 15 13 21 21 C 1.52994 * 109.47387 * 184.99610 * 4 3 2 22 22 C 1.53782 * 113.61734 * 180.02562 * 21 4 3 23 23 C 1.53781 * 87.08260 * 220.02231 * 22 21 4 24 24 C 1.53786 * 87.17350 * 25.39213 * 23 22 21 25 25 H 1.09002 * 109.46943 * 299.99882 * 1 2 3 26 26 H 1.08995 * 109.47108 * 59.99596 * 1 2 3 27 27 H 1.08997 * 109.47127 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46943 * 240.00118 * 2 1 3 29 29 H 1.09003 * 109.47325 * 120.00235 * 2 1 3 30 30 H 1.09002 * 109.47083 * 60.00203 * 3 2 1 31 31 H 1.09003 * 109.47179 * 300.00324 * 3 2 1 32 32 H 0.97001 * 120.00318 * 25.00859 * 6 4 3 33 33 H 0.97001 * 120.00373 * 0.02562 * 9 7 6 34 34 H 1.08994 * 109.47240 * 300.00478 * 10 9 7 35 35 H 1.09003 * 109.46886 * 60.00912 * 10 9 7 36 36 H 1.09009 * 109.46844 * 300.00412 * 11 10 9 37 37 H 1.09001 * 109.47214 * 59.99895 * 11 10 9 38 38 H 1.09007 * 109.46684 * 300.00125 * 12 11 10 39 39 H 1.09001 * 109.47478 * 59.99535 * 12 11 10 40 40 H 0.96999 * 119.99870 * 179.97438 * 16 15 13 41 41 H 1.09002 * 112.84929 * 311.20124 * 21 4 3 42 42 H 1.09001 * 113.61250 * 105.47049 * 22 21 4 43 43 H 1.08997 * 113.61225 * 334.56890 * 22 21 4 44 44 H 1.09002 * 113.61445 * 139.98212 * 23 22 21 45 45 H 1.09002 * 113.61408 * 270.79943 * 23 22 21 46 46 H 1.08993 * 113.61491 * 89.15923 * 24 23 22 47 47 H 1.09000 * 113.61138 * 220.06261 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8531 0.8426 6 7 4.0588 0.8585 -1.2509 7 6 5.2808 0.2920 -1.2981 8 8 5.9774 0.2652 -0.3019 9 7 5.7303 -0.2457 -2.4494 10 6 7.0584 -0.8620 -2.5005 11 6 7.3215 -1.3902 -3.9122 12 6 8.7082 -2.0344 -3.9655 13 6 8.9676 -2.5540 -5.3560 14 1 8.2181 -2.4369 -6.1249 15 6 10.1616 -3.1789 -5.6470 16 7 11.0745 -3.3210 -4.7109 17 14 10.4829 -3.8237 -7.3705 18 1 10.4210 -2.6997 -8.3390 19 1 11.8294 -4.4478 -7.4226 20 1 9.4539 -4.8357 -7.7202 21 6 4.0800 2.8794 0.1263 22 6 5.6138 2.9902 0.1359 23 6 5.4507 4.0671 1.2215 24 6 4.1111 3.3996 1.5750 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.5030 0.8797 -2.0457 33 1 5.1744 -0.2247 -3.2441 34 1 7.8137 -0.1192 -2.2443 35 1 7.1038 -1.6868 -1.7894 36 1 6.5660 -2.1329 -4.1689 37 1 7.2761 -0.5652 -4.6232 38 1 9.4638 -1.2918 -3.7087 39 1 8.7532 -2.8594 -3.2546 40 1 11.9145 -3.7610 -4.9155 41 1 3.5976 3.5624 -0.5730 42 1 6.0300 3.3702 -0.7971 43 1 6.1144 2.0881 0.4876 44 1 6.1940 4.0022 2.0162 45 1 5.3441 5.0761 0.8231 46 1 4.2002 2.6098 2.3207 47 1 3.3160 4.1098 1.8020 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458301788.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:38 Heat of formation + Delta-G solvation = -68.335526 kcal Electronic energy + Delta-G solvation = -22318.133157 eV Core-core repulsion = 19113.335792 eV Total energy + Delta-G solvation = -3204.797366 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.39140 -39.54566 -37.10875 -36.60620 -35.15117 -34.31624 -32.86918 -30.37791 -28.31265 -26.58885 -26.25084 -24.99910 -23.02631 -22.27832 -21.98035 -21.58779 -20.32141 -19.08920 -18.51256 -17.47235 -16.91982 -16.52753 -16.27616 -16.09192 -15.88444 -15.43580 -15.18535 -14.95107 -14.35720 -14.24233 -13.77528 -13.73199 -13.56740 -13.19906 -12.95078 -12.89309 -12.71140 -12.54316 -12.44805 -12.40868 -12.33493 -11.86702 -11.69648 -11.65207 -11.51746 -11.48619 -11.28238 -11.21861 -10.98875 -10.92445 -10.54560 -10.11403 -9.62642 -8.19107 -6.30903 1.41522 1.44848 1.52651 1.79555 2.24864 2.42282 3.14433 3.34719 3.64537 3.83087 3.87375 4.02674 4.14282 4.16759 4.19445 4.24119 4.24771 4.45252 4.57452 4.66416 4.73352 4.83303 4.87159 4.94590 4.95822 4.97156 5.02133 5.03552 5.09201 5.15373 5.16462 5.17827 5.30928 5.35153 5.41111 5.48705 5.51079 5.56929 5.68196 5.71561 5.78752 5.84562 6.10981 6.23234 6.86374 7.21168 7.38693 7.71106 8.92945 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021782 B = 0.002837 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.147456 B = 9865.760065 C =10810.055247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C -0.114 4.114 4 C 0.173 3.827 5 H 0.060 0.940 6 N -0.724 5.724 7 C 0.698 3.302 8 O -0.629 6.629 9 N -0.734 5.734 10 C 0.153 3.847 11 C -0.100 4.100 12 C 0.025 3.975 13 C -0.542 4.542 14 H 0.067 0.933 15 C -0.004 4.004 16 N -0.936 5.936 17 Si 0.968 3.032 18 H -0.265 1.265 19 H -0.286 1.286 20 H -0.265 1.265 21 C -0.114 4.114 22 C -0.152 4.152 23 C -0.144 4.144 24 C -0.120 4.120 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.048 0.952 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.408 0.592 33 H 0.409 0.591 34 H 0.043 0.957 35 H 0.044 0.956 36 H 0.067 0.933 37 H 0.066 0.934 38 H -0.009 1.009 39 H -0.009 1.009 40 H 0.263 0.737 41 H 0.102 0.898 42 H 0.039 0.961 43 H 0.078 0.922 44 H 0.058 0.942 45 H 0.088 0.912 46 H 0.074 0.926 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.609 13.717 8.843 28.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.151 4.151 4 C 0.068 3.932 5 H 0.078 0.922 6 N -0.380 5.380 7 C 0.398 3.602 8 O -0.511 6.511 9 N -0.390 5.390 10 C 0.028 3.972 11 C -0.138 4.138 12 C -0.013 4.013 13 C -0.580 4.580 14 H 0.085 0.915 15 C -0.201 4.201 16 N -0.576 5.576 17 Si 0.792 3.208 18 H -0.190 1.190 19 H -0.212 1.212 20 H -0.190 1.190 21 C -0.134 4.134 22 C -0.190 4.190 23 C -0.181 4.181 24 C -0.158 4.158 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.110 0.890 31 H 0.103 0.897 32 H 0.244 0.756 33 H 0.245 0.755 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.009 0.991 39 H 0.010 0.990 40 H 0.072 0.928 41 H 0.121 0.879 42 H 0.058 0.942 43 H 0.096 0.904 44 H 0.077 0.923 45 H 0.106 0.894 46 H 0.093 0.907 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -22.823 13.616 9.779 28.318 hybrid contribution 0.624 -0.627 -1.311 1.582 sum -22.199 12.989 8.468 27.078 Atomic orbital electron populations 1.21746 0.94752 1.01742 1.02394 1.21516 0.96560 0.96689 1.01561 1.21845 0.91449 0.97404 1.04443 1.20932 0.94524 0.92323 0.85378 0.92154 1.45025 1.15867 1.62293 1.14815 1.16150 0.82400 0.78340 0.83316 1.90818 1.58741 1.65667 1.35847 1.45046 1.19270 1.62680 1.11984 1.21002 0.82614 0.95848 0.97752 1.21580 0.98210 0.99965 0.94015 1.18927 0.92244 0.94341 0.95802 1.21661 1.01757 1.37431 0.97172 0.91506 1.26040 0.96019 0.96360 1.01715 1.70114 1.07765 1.44348 1.35373 0.85462 0.77296 0.78861 0.79187 1.19000 1.21156 1.18965 1.23011 0.95399 0.96472 0.98489 1.23123 0.97421 0.99918 0.98535 1.22851 0.98301 0.98413 0.98543 1.22828 0.97557 1.00067 0.95368 0.92176 0.91922 0.93104 0.92538 0.93340 0.89046 0.89679 0.75583 0.75465 0.93845 0.93756 0.91433 0.91490 0.99076 0.99030 0.92801 0.87940 0.94173 0.90389 0.92344 0.89389 0.90711 0.89312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.91 71.98 0.71 -0.82 16 2 C -0.13 -1.65 5.82 30.59 0.18 -1.47 16 3 C -0.11 -1.28 4.75 30.59 0.15 -1.13 16 4 C 0.17 3.14 1.94 44.99 0.09 3.22 16 5 H 0.06 1.46 7.38 -2.39 -0.02 1.45 16 6 N -0.72 -14.41 4.49 -457.81 -2.06 -16.46 16 7 C 0.70 20.64 7.85 179.05 1.41 22.05 16 8 O -0.63 -24.24 13.13 -3.99 -0.05 -24.29 16 9 N -0.73 -20.82 5.56 -478.52 -2.66 -23.48 16 10 C 0.15 5.59 5.67 86.38 0.49 6.08 16 11 C -0.10 -3.91 5.27 30.59 0.16 -3.75 16 12 C 0.02 1.30 4.97 29.84 0.15 1.45 16 13 C -0.54 -30.56 9.11 25.60 0.23 -30.32 16 14 H 0.07 3.52 7.74 -2.91 -0.02 3.49 16 15 C 0.00 -0.22 5.46 84.65 0.46 0.25 16 16 N -0.94 -57.78 13.29 21.45 0.28 -57.50 16 17 Si 0.97 44.03 29.54 68.60 2.03 46.06 16 18 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 19 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 20 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 21 C -0.11 -2.02 3.32 -10.21 -0.03 -2.05 16 22 C -0.15 -3.81 6.51 31.12 0.20 -3.61 16 23 C -0.14 -2.76 8.08 31.12 0.25 -2.51 16 24 C -0.12 -1.90 7.65 31.18 0.24 -1.66 16 25 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.06 0.82 7.75 -2.39 -0.02 0.80 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.41 5.57 8.62 -92.71 -0.80 4.77 16 33 H 0.41 8.76 8.49 -92.71 -0.79 7.97 16 34 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 37 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 38 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 39 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 40 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 41 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.08 2.57 5.41 -2.39 -0.01 2.55 16 44 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.07 1.29 7.97 -2.39 -0.02 1.27 16 47 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -71.17 373.73 1.57 -69.60 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: -0.66 Total: 20.35 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: 4.68 Total: -14.28 kcal Atomic # 7 Polarization: -93.01 SS G_CDS: -4.43 Total: -97.44 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.05 Total: -24.29 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -71.17 1.57 -69.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458301788.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.269 kcal (2) G-P(sol) polarization free energy of solvation -71.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds