Wall clock time and date at job start Tue Mar 31 2020 06:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46776 * 2 1 4 4 C 1.52997 * 109.47348 * 120.00134 * 2 1 3 5 5 H 1.08999 * 112.78061 * 308.72105 * 4 2 1 6 6 C 1.53756 * 113.46501 * 177.82415 * 4 2 1 7 7 H 1.09004 * 114.08611 * 25.04402 * 6 4 2 8 8 C 1.52994 * 114.57853 * 157.92950 * 6 4 2 9 9 C 1.52998 * 109.47567 * 173.17760 * 8 6 4 10 10 C 1.53005 * 109.47059 * 293.17703 * 8 6 4 11 11 C 1.53494 * 83.25706 * 271.50659 * 6 4 2 12 12 N 1.47061 * 113.46788 * 79.50912 * 4 2 1 13 13 C 1.34784 * 136.05544 * 267.69479 * 12 4 2 14 14 O 1.21588 * 119.99858 * 359.62632 * 13 12 4 15 15 N 1.34777 * 119.99964 * 179.63048 * 13 12 4 16 16 C 1.46496 * 119.99610 * 180.02562 * 15 13 12 17 17 C 1.52998 * 109.46847 * 179.97438 * 16 15 13 18 18 C 1.50706 * 109.47348 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99758 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00102 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00217 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99766 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47057 * 179.97438 * 22 20 18 24 24 H 1.48500 * 109.47389 * 300.00068 * 22 20 18 25 25 H 1.48504 * 109.47102 * 60.00417 * 22 20 18 26 26 H 1.09004 * 109.46970 * 299.99562 * 1 2 3 27 27 H 1.08999 * 109.47383 * 60.00027 * 1 2 3 28 28 H 1.08996 * 109.46910 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46970 * 240.00438 * 2 1 3 30 30 H 1.09002 * 109.46914 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47584 * 299.99870 * 3 2 1 32 32 H 1.09003 * 109.47525 * 60.00586 * 3 2 1 33 33 H 1.09002 * 109.47011 * 53.17234 * 8 6 4 34 34 H 1.08992 * 109.47257 * 59.99608 * 9 8 6 35 35 H 1.08995 * 109.47498 * 180.02562 * 9 8 6 36 36 H 1.09008 * 109.46787 * 299.99589 * 9 8 6 37 37 H 1.09002 * 109.46826 * 299.99645 * 10 8 6 38 38 H 1.09001 * 109.46696 * 59.99619 * 10 8 6 39 39 H 1.08995 * 109.47431 * 179.97438 * 10 8 6 40 40 H 1.09008 * 113.46820 * 218.98550 * 11 6 4 41 41 H 1.08999 * 113.52649 * 88.55016 * 11 6 4 42 42 H 0.96996 * 119.99887 * 359.97438 * 15 13 12 43 43 H 1.09000 * 109.47627 * 59.99917 * 16 15 13 44 44 H 1.09002 * 109.46983 * 299.99313 * 16 15 13 45 45 H 1.09001 * 109.47671 * 59.99931 * 17 16 15 46 46 H 1.09006 * 109.47297 * 299.99651 * 17 16 15 47 47 H 0.97001 * 119.99646 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.5881 -0.3460 2.1673 6 6 3.5729 -0.8213 1.3154 7 1 4.0940 -0.0452 0.7548 8 6 4.1367 -1.0332 2.7218 9 6 5.6432 -1.2853 2.6349 10 6 3.8764 0.2141 3.5688 11 6 3.3415 -2.1184 0.5280 12 7 2.0037 -2.1870 1.1350 13 6 1.1274 -3.1631 1.4448 14 8 0.0622 -2.8828 1.9597 15 7 1.4320 -4.4498 1.1840 16 6 0.4792 -5.5106 1.5202 17 6 1.0653 -6.8670 1.1232 18 6 0.0855 -7.9585 1.4696 19 1 -0.8604 -7.7095 1.9277 20 6 0.3967 -9.2747 1.2019 21 7 1.5487 -9.5778 0.6447 22 14 -0.8175 -10.6275 1.6321 23 1 -0.2493 -11.9439 1.2454 24 1 -1.0798 -10.6110 3.0936 25 1 -2.0890 -10.4031 0.8984 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 3.6503 -1.8931 3.1824 34 1 6.1295 -0.4255 2.1743 35 1 6.0447 -1.4367 3.6368 36 1 5.8286 -2.1740 2.0314 37 1 4.3627 1.0740 3.1082 38 1 2.8030 0.3937 3.6308 39 1 4.2776 0.0631 4.5710 40 1 3.9982 -2.9337 0.8318 41 1 3.3211 -1.9740 -0.5522 42 1 2.2816 -4.6734 0.7729 43 1 -0.4533 -5.3461 0.9804 44 1 0.2853 -5.4982 2.5928 45 1 1.9980 -7.0319 1.6627 46 1 1.2590 -6.8792 0.0505 47 1 2.1793 -8.8753 0.4217 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458660354.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:04 Heat of formation + Delta-G solvation = -31.359178 kcal Electronic energy + Delta-G solvation = -23101.264888 eV Core-core repulsion = 19898.070937 eV Total energy + Delta-G solvation = -3203.193951 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.13229 -38.44653 -35.34304 -34.86153 -34.06953 -32.95069 -29.90314 -28.35765 -27.61419 -27.07475 -25.51905 -24.19936 -23.16683 -21.45590 -20.69897 -20.16759 -18.76124 -17.81555 -16.63860 -16.12070 -15.89309 -15.08548 -14.72888 -14.44420 -14.13649 -14.07564 -13.74124 -13.64185 -13.56747 -12.98497 -12.92507 -12.50602 -12.33900 -12.27214 -12.26694 -12.10437 -11.64247 -11.57367 -11.48156 -11.18906 -11.12072 -10.98323 -10.86913 -10.72474 -10.40473 -10.23765 -10.16410 -9.93981 -9.74057 -8.72644 -8.67705 -8.39929 -8.20158 -6.42660 -4.12172 2.71364 3.44263 3.45994 3.56579 3.64567 3.97007 4.23427 4.40561 4.54787 4.70946 4.76571 4.77734 4.91104 5.06986 5.09696 5.24439 5.28763 5.35692 5.36369 5.43287 5.44582 5.48721 5.51646 5.63107 5.64749 5.69936 5.76482 5.78534 5.88489 5.91338 6.00655 6.07318 6.15484 6.22903 6.26502 6.28683 6.29408 6.65133 6.93389 7.27660 7.38288 7.56407 8.10651 8.39351 8.40639 8.81323 9.00727 9.59691 10.98446 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022118 B = 0.003469 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.646745 B = 8069.503847 C = 8753.893697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.100 4.100 3 C -0.143 4.143 4 C 0.162 3.838 5 H 0.084 0.916 6 C -0.116 4.116 7 H 0.097 0.903 8 C -0.076 4.076 9 C -0.145 4.145 10 C -0.145 4.145 11 C 0.100 3.900 12 N -0.661 5.661 13 C 0.729 3.271 14 O -0.592 6.592 15 N -0.738 5.738 16 C 0.149 3.851 17 C 0.001 3.999 18 C -0.601 4.601 19 H 0.053 0.947 20 C 0.017 3.983 21 N -0.911 5.911 22 Si 1.071 2.929 23 H -0.282 1.282 24 H -0.287 1.287 25 H -0.287 1.287 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.391 0.609 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.012 0.988 46 H 0.012 0.988 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.399 22.816 -0.560 24.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.120 4.120 3 C -0.200 4.200 4 C 0.057 3.943 5 H 0.102 0.898 6 C -0.135 4.135 7 H 0.115 0.885 8 C -0.095 4.095 9 C -0.202 4.202 10 C -0.203 4.203 11 C -0.023 4.023 12 N -0.400 5.400 13 C 0.433 3.567 14 O -0.471 6.471 15 N -0.392 5.392 16 C 0.026 3.974 17 C -0.037 4.037 18 C -0.640 4.640 19 H 0.071 0.929 20 C -0.187 4.187 21 N -0.547 5.547 22 Si 0.899 3.101 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.213 1.213 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.223 0.777 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.031 0.969 46 H 0.031 0.969 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.168 21.129 -0.141 22.312 hybrid contribution 0.584 1.462 -0.291 1.601 sum 7.753 22.591 -0.432 23.888 Atomic orbital electron populations 1.21749 0.94294 1.02683 1.01323 1.21349 0.96884 0.96154 0.97574 1.21800 1.00957 0.95191 1.02086 1.22439 0.93933 0.79686 0.98212 0.89766 1.22996 0.95508 0.97986 0.96996 0.88499 1.20827 0.96036 0.99117 0.93507 1.21799 0.94936 1.01615 1.01851 1.21798 1.01759 0.97235 0.99466 1.22995 0.83849 0.97674 0.97804 1.48797 1.18854 1.06504 1.65894 1.15406 0.82095 0.80093 0.79151 1.90890 1.23353 1.82187 1.50640 1.45484 1.22561 1.04706 1.66402 1.21417 0.90849 0.85496 0.99624 1.19445 0.97091 0.90871 0.96246 1.21889 1.04249 0.92804 1.45027 0.92854 1.25886 0.99347 0.99277 0.94170 1.70804 1.07889 1.36897 1.39068 0.83507 0.74674 0.75576 0.76345 1.20734 1.21299 1.21312 0.92659 0.92899 0.92087 0.90796 0.92343 0.92391 0.92425 0.90719 0.92645 0.92573 0.92544 0.92622 0.92561 0.92616 0.90751 0.90225 0.77684 0.92692 0.92677 0.96939 0.96948 0.92210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.19 37.16 0.34 -1.33 16 2 C -0.10 -0.98 2.75 -90.62 -0.25 -1.23 16 3 C -0.14 -1.01 9.01 37.16 0.33 -0.68 16 4 C 0.16 1.81 3.15 -72.27 -0.23 1.58 16 5 H 0.08 1.05 6.90 -51.93 -0.36 0.70 16 6 C -0.12 -0.99 2.85 -89.97 -0.26 -1.25 16 7 H 0.10 0.64 6.55 -51.93 -0.34 0.30 16 8 C -0.08 -0.68 2.62 -90.62 -0.24 -0.92 16 9 C -0.14 -1.09 9.17 37.16 0.34 -0.75 16 10 C -0.15 -1.16 9.07 37.16 0.34 -0.82 16 11 C 0.10 1.02 7.45 -8.52 -0.06 0.95 16 12 N -0.66 -9.29 3.27 -183.02 -0.60 -9.89 16 13 C 0.73 13.83 8.79 -86.91 -0.76 13.06 16 14 O -0.59 -13.52 17.12 5.29 0.09 -13.43 16 15 N -0.74 -14.10 5.56 -65.23 -0.36 -14.46 16 16 C 0.15 3.38 5.61 -4.04 -0.02 3.36 16 17 C 0.00 0.02 4.40 -27.88 -0.12 -0.10 16 18 C -0.60 -17.28 9.11 -34.44 -0.31 -17.59 16 19 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 20 C 0.02 0.49 5.46 -17.82 -0.10 0.40 16 21 N -0.91 -27.68 13.65 55.43 0.76 -26.92 16 22 Si 1.07 25.41 29.90 -169.99 -5.08 20.32 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.07 0.73 7.02 -51.93 -0.36 0.36 16 30 H 0.06 0.34 6.57 -51.93 -0.34 0.00 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.87 7.95 -51.93 -0.41 0.46 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.43 7.83 -51.92 -0.41 0.03 16 37 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.06 0.49 6.90 -51.93 -0.36 0.13 16 39 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.73 7.80 -51.92 -0.41 0.32 16 41 H 0.08 0.70 7.28 -51.93 -0.38 0.33 16 42 H 0.39 6.59 8.19 -40.82 -0.33 6.25 16 43 H 0.05 1.31 8.14 -51.93 -0.42 0.88 16 44 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.01 0.32 8.01 -51.93 -0.42 -0.09 16 46 H 0.01 0.32 8.01 -51.93 -0.42 -0.09 16 47 H 0.27 8.03 7.22 -40.82 -0.29 7.74 16 LS Contribution 372.99 15.07 5.62 5.62 Total: -1.00 -33.31 372.99 -9.26 -42.56 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -8.68 Total: 1.50 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -1.00 Total: -5.30 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: -0.21 Total: -51.28 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: 0.09 Total: -13.43 kcal Atomic # 14 Polarization: 25.41 SS G_CDS: -5.08 Total: 20.32 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.31 -9.26 -42.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458660354.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.202 kcal (2) G-P(sol) polarization free energy of solvation -33.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds