Wall clock time and date at job start Tue Mar 31 2020 06:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47187 * 2 1 4 4 C 1.52998 * 109.47277 * 120.00229 * 2 1 3 5 5 H 1.09001 * 113.28265 * 306.71596 * 4 2 1 6 6 C 1.53753 * 114.08815 * 80.20788 * 4 2 1 7 7 N 1.47064 * 87.88949 * 139.78378 * 6 4 2 8 8 C 1.34774 * 136.05940 * 152.97156 * 7 6 4 9 9 O 1.21594 * 119.99826 * 179.62797 * 8 7 6 10 10 N 1.34774 * 120.00260 * 359.61923 * 8 7 6 11 11 C 1.46501 * 120.00147 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.46634 * 180.02562 * 11 10 8 13 13 C 1.50703 * 109.46661 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00240 * 359.97438 * 13 12 11 15 15 C 1.37874 * 119.99891 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00251 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99968 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47653 * 90.00067 * 17 15 13 19 19 H 1.48509 * 109.47400 * 210.00251 * 17 15 13 20 20 H 1.48502 * 109.47489 * 329.99676 * 17 15 13 21 21 C 1.47075 * 87.88293 * 332.70548 * 7 6 4 22 22 H 1.09001 * 113.46500 * 142.17971 * 21 7 6 23 23 C 1.52998 * 113.46638 * 272.56544 * 21 7 6 24 24 C 1.53002 * 109.46822 * 279.26060 * 23 21 7 25 25 C 1.52990 * 109.47506 * 39.26377 * 23 21 7 26 26 H 1.09008 * 109.46740 * 300.00198 * 1 2 3 27 27 H 1.09006 * 109.47264 * 59.99798 * 1 2 3 28 28 H 1.08995 * 109.47472 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47059 * 240.00207 * 2 1 3 30 30 H 1.08996 * 109.46906 * 53.30168 * 3 2 1 31 31 H 1.09005 * 109.46662 * 173.30338 * 3 2 1 32 32 H 1.09001 * 109.46914 * 293.29983 * 3 2 1 33 33 H 1.08998 * 113.46645 * 25.04513 * 6 4 2 34 34 H 1.09002 * 113.55484 * 254.53295 * 6 4 2 35 35 H 0.97003 * 119.99534 * 0.02562 * 10 8 7 36 36 H 1.08998 * 109.46905 * 299.99759 * 11 10 8 37 37 H 1.08999 * 109.46754 * 60.00608 * 11 10 8 38 38 H 1.09000 * 109.47789 * 299.99611 * 12 11 10 39 39 H 1.08999 * 109.47055 * 60.00791 * 12 11 10 40 40 H 0.97005 * 119.99925 * 180.02562 * 16 15 13 41 41 H 1.09001 * 109.47116 * 159.26703 * 23 21 7 42 42 H 1.08999 * 109.47674 * 300.00279 * 24 23 21 43 43 H 1.09001 * 109.47095 * 60.00838 * 24 23 21 44 44 H 1.09004 * 109.47236 * 179.97438 * 24 23 21 45 45 H 1.09003 * 109.47324 * 67.91196 * 25 23 21 46 46 H 1.09006 * 109.47118 * 187.91333 * 25 23 21 47 47 H 1.08998 * 109.47576 * 307.91606 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6193 -0.3291 2.1751 6 6 2.0241 -2.2548 1.1388 7 7 3.3213 -2.2638 1.8317 8 6 3.9957 -3.1262 2.6178 9 8 5.0945 -2.8280 3.0445 10 7 3.4521 -4.3190 2.9309 11 6 4.1849 -5.2562 3.7858 12 6 3.3517 -6.5241 3.9838 13 6 4.1059 -7.4885 4.8627 14 1 5.0819 -7.2237 5.2417 15 6 3.5502 -8.7092 5.1821 16 7 2.3623 -9.0323 4.7194 17 14 4.4846 -9.9043 6.2721 18 1 4.1367 -9.6536 7.6937 19 1 4.1157 -11.2966 5.9103 20 1 5.9445 -9.7131 6.0786 21 6 3.5616 -0.9202 1.2839 22 1 4.0718 -0.2530 1.9788 23 6 4.2061 -0.9343 -0.1036 24 6 5.7132 -1.1576 0.0364 25 6 3.5982 -2.0642 -0.9369 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.5821 1.9897 0.8240 31 1 3.1234 1.4448 0.1198 32 1 1.7779 1.9205 -0.9439 33 1 2.0779 -2.6166 0.1121 34 1 1.2235 -2.7244 1.7103 35 1 2.5755 -4.5569 2.5902 36 1 5.1323 -5.5147 3.3129 37 1 4.3763 -4.7920 4.7532 38 1 2.4041 -6.2661 4.4565 39 1 3.1608 -6.9882 3.0162 40 1 1.9712 -9.8910 4.9444 41 1 4.0246 0.0200 -0.5982 42 1 6.1463 -0.3526 0.6300 43 1 5.8947 -2.1119 0.5309 44 1 6.1724 -1.1681 -0.9522 45 1 2.5554 -1.8341 -1.1554 46 1 4.1515 -2.1652 -1.8707 47 1 3.6547 -2.9985 -0.3783 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458660355.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:11 Heat of formation + Delta-G solvation = -1.102861 kcal Electronic energy + Delta-G solvation = -23232.586259 eV Core-core repulsion = 20030.704320 eV Total energy + Delta-G solvation = -3201.881939 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -41.50449 -38.50577 -35.01757 -34.63193 -33.96989 -32.73320 -29.98165 -28.49125 -27.98756 -27.34875 -25.51601 -24.61433 -22.81003 -21.12856 -20.68674 -20.01101 -18.74989 -17.60500 -16.40625 -16.26580 -15.67582 -15.57625 -14.58040 -14.55518 -14.32969 -13.97705 -13.54991 -13.51164 -13.13452 -13.05377 -12.81639 -12.75103 -12.57550 -12.39708 -12.23535 -11.79240 -11.55190 -11.43134 -11.25748 -11.15970 -11.01216 -10.92934 -10.67636 -10.60247 -10.43502 -10.27707 -10.20418 -9.79156 -9.49818 -9.22671 -8.62389 -8.42300 -8.09429 -6.07281 -4.09774 2.79320 3.31020 3.36940 3.41680 3.63516 4.04605 4.33235 4.47774 4.53139 4.67852 4.71862 4.78139 4.84285 5.02804 5.22792 5.24283 5.29778 5.32194 5.39055 5.42323 5.44101 5.58226 5.60792 5.64165 5.67513 5.76536 5.81187 5.84195 5.86370 5.93217 6.01463 6.05588 6.14944 6.30452 6.35456 6.42879 6.43491 6.80251 7.07415 7.52417 7.66017 7.67425 7.92129 8.29554 8.50159 8.95460 9.09407 9.54809 11.04421 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028023 B = 0.003276 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.942771 B = 8545.481452 C = 9064.785923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.150 4.150 4 C -0.114 4.114 5 H 0.101 0.899 6 C 0.078 3.922 7 N -0.659 5.659 8 C 0.729 3.271 9 O -0.594 6.594 10 N -0.736 5.736 11 C 0.141 3.859 12 C 0.014 3.986 13 C -0.520 4.520 14 H 0.059 0.941 15 C 0.058 3.942 16 N -0.895 5.895 17 Si 0.897 3.103 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.272 1.272 21 C 0.162 3.838 22 H 0.081 0.919 23 C -0.100 4.100 24 C -0.145 4.145 25 C -0.161 4.161 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.087 0.913 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.104 0.896 34 H 0.069 0.931 35 H 0.392 0.608 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.021 0.979 39 H 0.021 0.979 40 H 0.262 0.738 41 H 0.087 0.913 42 H 0.053 0.947 43 H 0.061 0.939 44 H 0.051 0.949 45 H 0.070 0.930 46 H 0.052 0.948 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.260 20.014 -13.731 24.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.207 4.207 4 C -0.133 4.133 5 H 0.119 0.881 6 C -0.045 4.045 7 N -0.399 5.399 8 C 0.432 3.568 9 O -0.473 6.473 10 N -0.389 5.389 11 C 0.019 3.981 12 C -0.024 4.024 13 C -0.559 4.559 14 H 0.078 0.922 15 C -0.143 4.143 16 N -0.534 5.534 17 Si 0.725 3.275 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.197 1.197 21 C 0.057 3.943 22 H 0.099 0.901 23 C -0.120 4.120 24 C -0.202 4.202 25 C -0.218 4.218 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.105 0.895 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.121 0.879 34 H 0.087 0.913 35 H 0.225 0.775 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.040 0.960 39 H 0.040 0.960 40 H 0.071 0.929 41 H 0.105 0.895 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.070 0.930 45 H 0.088 0.912 46 H 0.071 0.929 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.411 19.864 -13.204 24.095 hybrid contribution -0.013 -0.965 0.528 1.100 sum -3.425 18.899 -12.676 23.013 Atomic orbital electron populations 1.21819 0.94905 1.01960 1.01724 1.21296 0.95936 0.96436 0.97733 1.21900 1.01416 0.95684 1.01707 1.23095 0.95557 0.95188 0.99445 0.88063 1.23750 0.86047 0.95618 0.99078 1.48700 1.21012 1.19068 1.51131 1.15415 0.82983 0.79674 0.78730 1.90886 1.19946 1.77125 1.59323 1.45482 1.22551 1.16018 1.54890 1.21584 0.95354 0.89263 0.91929 1.19316 0.95391 0.90086 0.97570 1.21057 1.03697 1.00604 1.30508 0.92227 1.24995 0.95012 0.98132 0.96169 1.69961 1.15855 1.22532 1.45027 0.86510 0.80257 0.80086 0.80687 1.20565 1.21184 1.19717 1.22290 0.95013 0.82995 0.93983 0.90052 1.21416 0.96070 0.99787 0.94709 1.21772 0.94412 1.02863 1.01154 1.22421 1.00501 0.99250 0.99590 0.92671 0.92723 0.92469 0.89505 0.92650 0.92169 0.92709 0.87853 0.91259 0.77549 0.92870 0.92876 0.96033 0.96025 0.92887 0.89484 0.92747 0.91974 0.92955 0.91166 0.92894 0.91688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.17 37.16 0.34 -0.54 16 2 C -0.10 -0.62 2.01 -90.62 -0.18 -0.80 16 3 C -0.15 -0.90 8.77 37.16 0.33 -0.58 16 4 C -0.11 -0.99 3.38 -89.97 -0.30 -1.29 16 5 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 6 C 0.08 0.80 6.99 -8.37 -0.06 0.74 16 7 N -0.66 -9.34 2.79 -182.99 -0.51 -9.85 16 8 C 0.73 13.87 8.79 -86.92 -0.76 13.11 16 9 O -0.59 -13.59 17.12 5.28 0.09 -13.50 16 10 N -0.74 -14.10 5.56 -65.22 -0.36 -14.46 16 11 C 0.14 3.19 5.61 -4.04 -0.02 3.16 16 12 C 0.01 0.35 5.09 -27.88 -0.14 0.21 16 13 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 14 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -26.45 13.29 55.43 0.74 -25.72 16 17 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 21 C 0.16 1.82 3.61 -72.39 -0.26 1.56 16 22 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 23 C -0.10 -0.96 2.31 -90.62 -0.21 -1.17 16 24 C -0.14 -1.67 9.19 37.16 0.34 -1.33 16 25 C -0.16 -1.48 7.17 37.15 0.27 -1.21 16 26 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.09 0.54 4.45 -51.93 -0.23 0.31 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.38 5.94 -51.93 -0.31 0.07 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.10 0.93 3.99 -51.93 -0.21 0.73 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.39 6.68 8.19 -40.82 -0.33 6.34 16 36 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 37 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 41 H 0.09 0.67 5.55 -51.93 -0.29 0.38 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.51 3.97 -51.93 -0.21 0.30 16 46 H 0.05 0.45 8.13 -51.93 -0.42 0.03 16 47 H 0.06 0.76 6.27 -51.93 -0.33 0.43 16 LS Contribution 360.92 15.07 5.44 5.44 Total: -1.00 -32.51 360.92 -8.91 -41.42 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -8.21 Total: 1.62 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -1.08 Total: -1.61 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: -0.14 Total: -50.03 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.09 Total: -13.50 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.51 -8.91 -41.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458660355.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.322 kcal (2) G-P(sol) polarization free energy of solvation -32.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds