Wall clock time and date at job start Tue Mar 31 2020 06:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47187 * 2 1 4 4 C 1.52998 * 109.47277 * 120.00229 * 2 1 3 5 5 H 1.09001 * 113.28265 * 306.71596 * 4 2 1 6 6 C 1.53753 * 114.08815 * 80.20788 * 4 2 1 7 7 N 1.47064 * 87.88949 * 139.78378 * 6 4 2 8 8 C 1.34774 * 136.05940 * 152.97156 * 7 6 4 9 9 O 1.21594 * 119.99826 * 179.62797 * 8 7 6 10 10 N 1.34774 * 120.00260 * 359.61923 * 8 7 6 11 11 C 1.46501 * 120.00147 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.46634 * 180.02562 * 11 10 8 13 13 C 1.50703 * 109.46661 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00240 * 359.97438 * 13 12 11 15 15 C 1.37874 * 119.99891 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00251 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99968 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47653 * 90.00067 * 17 15 13 19 19 H 1.48509 * 109.47400 * 210.00251 * 17 15 13 20 20 H 1.48502 * 109.47489 * 329.99676 * 17 15 13 21 21 C 1.47075 * 87.88293 * 332.70548 * 7 6 4 22 22 H 1.09001 * 113.46500 * 142.17971 * 21 7 6 23 23 C 1.52998 * 113.46638 * 272.56544 * 21 7 6 24 24 C 1.53002 * 109.46822 * 279.26060 * 23 21 7 25 25 C 1.52990 * 109.47506 * 39.26377 * 23 21 7 26 26 H 1.09008 * 109.46740 * 300.00198 * 1 2 3 27 27 H 1.09006 * 109.47264 * 59.99798 * 1 2 3 28 28 H 1.08995 * 109.47472 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47059 * 240.00207 * 2 1 3 30 30 H 1.08996 * 109.46906 * 53.30168 * 3 2 1 31 31 H 1.09005 * 109.46662 * 173.30338 * 3 2 1 32 32 H 1.09001 * 109.46914 * 293.29983 * 3 2 1 33 33 H 1.08998 * 113.46645 * 25.04513 * 6 4 2 34 34 H 1.09002 * 113.55484 * 254.53295 * 6 4 2 35 35 H 0.97003 * 119.99534 * 0.02562 * 10 8 7 36 36 H 1.08998 * 109.46905 * 299.99759 * 11 10 8 37 37 H 1.08999 * 109.46754 * 60.00608 * 11 10 8 38 38 H 1.09000 * 109.47789 * 299.99611 * 12 11 10 39 39 H 1.08999 * 109.47055 * 60.00791 * 12 11 10 40 40 H 0.97005 * 119.99925 * 180.02562 * 16 15 13 41 41 H 1.09001 * 109.47116 * 159.26703 * 23 21 7 42 42 H 1.08999 * 109.47674 * 300.00279 * 24 23 21 43 43 H 1.09001 * 109.47095 * 60.00838 * 24 23 21 44 44 H 1.09004 * 109.47236 * 179.97438 * 24 23 21 45 45 H 1.09003 * 109.47324 * 67.91196 * 25 23 21 46 46 H 1.09006 * 109.47118 * 187.91333 * 25 23 21 47 47 H 1.08998 * 109.47576 * 307.91606 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6193 -0.3291 2.1751 6 6 2.0241 -2.2548 1.1388 7 7 3.3213 -2.2638 1.8317 8 6 3.9957 -3.1262 2.6178 9 8 5.0945 -2.8280 3.0445 10 7 3.4521 -4.3190 2.9309 11 6 4.1849 -5.2562 3.7858 12 6 3.3517 -6.5241 3.9838 13 6 4.1059 -7.4885 4.8627 14 1 5.0819 -7.2237 5.2417 15 6 3.5502 -8.7092 5.1821 16 7 2.3623 -9.0323 4.7194 17 14 4.4846 -9.9043 6.2721 18 1 4.1367 -9.6536 7.6937 19 1 4.1157 -11.2966 5.9103 20 1 5.9445 -9.7131 6.0786 21 6 3.5616 -0.9202 1.2839 22 1 4.0718 -0.2530 1.9788 23 6 4.2061 -0.9343 -0.1036 24 6 5.7132 -1.1576 0.0364 25 6 3.5982 -2.0642 -0.9369 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.5821 1.9897 0.8240 31 1 3.1234 1.4448 0.1198 32 1 1.7779 1.9205 -0.9439 33 1 2.0779 -2.6166 0.1121 34 1 1.2235 -2.7244 1.7103 35 1 2.5755 -4.5569 2.5902 36 1 5.1323 -5.5147 3.3129 37 1 4.3763 -4.7920 4.7532 38 1 2.4041 -6.2661 4.4565 39 1 3.1608 -6.9882 3.0162 40 1 1.9712 -9.8910 4.9444 41 1 4.0246 0.0200 -0.5982 42 1 6.1463 -0.3526 0.6300 43 1 5.8947 -2.1119 0.5309 44 1 6.1724 -1.1681 -0.9522 45 1 2.5554 -1.8341 -1.1554 46 1 4.1515 -2.1652 -1.8707 47 1 3.6547 -2.9985 -0.3783 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458660355.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:09 Heat of formation + Delta-G solvation = -20.708971 kcal Electronic energy + Delta-G solvation = -23233.436444 eV Core-core repulsion = 20030.704320 eV Total energy + Delta-G solvation = -3202.732123 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.47701 -39.97701 -36.56746 -35.61980 -35.01609 -34.64296 -31.75253 -29.66558 -28.88060 -27.95511 -26.61576 -26.30415 -23.84180 -22.85624 -21.76907 -21.01297 -19.85903 -18.82978 -18.45653 -17.26808 -17.06264 -16.55051 -16.36875 -16.10253 -15.55427 -14.99933 -14.78329 -14.61611 -14.28362 -14.19883 -14.07761 -13.70219 -13.48991 -13.30372 -13.24320 -12.96818 -12.85050 -12.67584 -12.53395 -12.34228 -12.19729 -12.13017 -12.04784 -11.74913 -11.63913 -11.59874 -11.42925 -11.10937 -11.01279 -10.90911 -10.62333 -10.15754 -9.38191 -8.25815 -6.36588 1.40070 1.41362 1.50413 1.55170 2.15492 2.39336 3.01452 3.08674 3.28736 3.79195 3.87147 3.94686 3.98088 4.14683 4.34969 4.39711 4.46197 4.50146 4.53106 4.61086 4.63747 4.66739 4.76691 4.78097 4.80977 4.89083 4.96907 4.98076 5.02982 5.08288 5.17159 5.17672 5.27138 5.29970 5.36182 5.41618 5.44957 5.50240 5.54870 5.59393 5.69903 5.77012 6.13756 6.31680 6.76000 7.07473 7.32763 7.59732 8.86249 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028023 B = 0.003276 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.942771 B = 8545.481452 C = 9064.785923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.087 4.087 3 C -0.151 4.151 4 C -0.092 4.092 5 H 0.099 0.901 6 C 0.074 3.926 7 N -0.662 5.662 8 C 0.724 3.276 9 O -0.641 6.641 10 N -0.733 5.733 11 C 0.163 3.837 12 C 0.027 3.973 13 C -0.548 4.548 14 H 0.058 0.942 15 C 0.008 3.992 16 N -0.926 5.926 17 Si 0.967 3.033 18 H -0.271 1.271 19 H -0.278 1.278 20 H -0.267 1.267 21 C 0.153 3.847 22 H 0.065 0.935 23 C -0.094 4.094 24 C -0.143 4.143 25 C -0.159 4.159 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.096 0.904 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.123 0.877 34 H 0.073 0.927 35 H 0.402 0.598 36 H 0.040 0.960 37 H 0.041 0.959 38 H 0.007 0.993 39 H 0.008 0.992 40 H 0.267 0.733 41 H 0.119 0.881 42 H 0.051 0.949 43 H 0.018 0.982 44 H 0.070 0.930 45 H 0.095 0.905 46 H 0.063 0.937 47 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.209 21.049 -15.123 26.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.106 4.106 3 C -0.208 4.208 4 C -0.112 4.112 5 H 0.118 0.882 6 C -0.047 4.047 7 N -0.400 5.400 8 C 0.427 3.573 9 O -0.523 6.523 10 N -0.387 5.387 11 C 0.039 3.961 12 C -0.010 4.010 13 C -0.587 4.587 14 H 0.076 0.924 15 C -0.191 4.191 16 N -0.565 5.565 17 Si 0.791 3.209 18 H -0.197 1.197 19 H -0.203 1.203 20 H -0.191 1.191 21 C 0.049 3.951 22 H 0.083 0.917 23 C -0.113 4.113 24 C -0.201 4.201 25 C -0.216 4.216 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.114 0.886 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.140 0.860 34 H 0.092 0.908 35 H 0.237 0.763 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.026 0.974 39 H 0.026 0.974 40 H 0.075 0.925 41 H 0.136 0.864 42 H 0.070 0.930 43 H 0.038 0.962 44 H 0.089 0.911 45 H 0.113 0.887 46 H 0.082 0.918 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -4.411 20.942 -14.641 25.930 hybrid contribution 0.247 -1.206 0.909 1.530 sum -4.164 19.736 -13.732 24.401 Atomic orbital electron populations 1.21821 0.94169 1.02162 1.02238 1.21273 0.96418 0.96559 0.96353 1.21910 1.01192 0.95193 1.02482 1.22999 0.93153 0.94141 1.00871 0.88249 1.24085 0.83994 0.97044 0.99610 1.48786 1.22186 1.19120 1.49876 1.15541 0.82665 0.79835 0.79288 1.90838 1.22081 1.78080 1.61312 1.45179 1.22808 1.15975 1.54745 1.21063 0.94546 0.88678 0.91855 1.19098 0.94857 0.90870 0.96195 1.21444 1.04078 1.01748 1.31384 0.92393 1.25878 0.95905 0.99872 0.97438 1.70061 1.17190 1.23264 1.46001 0.85422 0.78969 0.77701 0.78817 1.19677 1.20295 1.19138 1.22635 0.97042 0.80950 0.94432 0.91664 1.21438 0.94381 1.01596 0.93877 1.21761 0.96348 1.00346 1.01599 1.22412 1.02243 0.97517 0.99392 0.92904 0.91555 0.92459 0.88585 0.92788 0.92432 0.91316 0.86009 0.90806 0.76289 0.94120 0.94090 0.97428 0.97401 0.92463 0.86350 0.92994 0.96232 0.91093 0.88660 0.91828 0.94494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.17 71.98 0.66 -0.63 16 2 C -0.09 -0.85 2.01 -10.79 -0.02 -0.87 16 3 C -0.15 -1.33 8.77 71.98 0.63 -0.70 16 4 C -0.09 -1.43 3.38 -10.37 -0.04 -1.46 16 5 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 6 C 0.07 1.41 6.99 83.27 0.58 1.99 16 7 N -0.66 -18.83 2.79 -851.11 -2.37 -21.20 16 8 C 0.72 28.52 8.79 179.06 1.57 30.10 16 9 O -0.64 -30.75 17.12 -4.01 -0.07 -30.82 16 10 N -0.73 -29.00 5.56 -478.53 -2.66 -31.66 16 11 C 0.16 7.64 5.61 86.38 0.48 8.12 16 12 C 0.03 1.44 5.09 29.85 0.15 1.60 16 13 C -0.55 -31.63 9.11 25.60 0.23 -31.39 16 14 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 15 C 0.01 0.45 5.46 84.65 0.46 0.92 16 16 N -0.93 -55.06 13.29 21.45 0.28 -54.77 16 17 Si 0.97 44.43 29.54 68.60 2.03 46.46 16 18 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 19 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 21 C 0.15 3.32 3.61 41.79 0.15 3.47 16 22 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 23 C -0.09 -1.64 2.31 -10.80 -0.02 -1.67 16 24 C -0.14 -3.27 9.19 71.98 0.66 -2.61 16 25 C -0.16 -2.57 7.17 71.98 0.52 -2.05 16 26 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 27 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 28 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.10 0.79 4.45 -2.38 -0.01 0.78 16 30 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.06 0.55 5.94 -2.38 -0.01 0.53 16 32 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.12 1.92 3.99 -2.39 -0.01 1.91 16 34 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.40 13.99 8.19 -92.71 -0.76 13.23 16 36 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.04 2.00 8.14 -2.39 -0.02 1.99 16 38 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.27 14.83 8.31 -92.70 -0.77 14.06 16 41 H 0.12 1.40 5.55 -2.39 -0.01 1.39 16 42 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.10 1.03 3.97 -2.39 -0.01 1.02 16 46 H 0.06 0.92 8.13 -2.38 -0.02 0.90 16 47 H 0.04 0.82 6.27 -2.39 -0.01 0.80 16 Total: -1.00 -72.22 360.92 3.42 -68.79 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: 0.19 Total: 18.40 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: 6.03 Total: 4.81 kcal Atomic # 7 Polarization: -102.89 SS G_CDS: -4.75 Total: -107.64 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -0.07 Total: -30.82 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -72.22 3.42 -68.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458660355.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.086 kcal (2) G-P(sol) polarization free energy of solvation -72.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds