Wall clock time and date at job start Tue Mar 31 2020 06:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46601 * 2 1 4 4 C 1.53002 * 109.46887 * 119.99719 * 2 1 3 5 5 H 1.09004 * 113.27910 * 42.60033 * 4 2 1 6 6 C 1.53754 * 114.39400 * 269.25095 * 4 2 1 7 7 N 1.47066 * 87.88744 * 272.67311 * 6 4 2 8 8 C 1.34778 * 136.05241 * 152.95705 * 7 6 4 9 9 O 1.21592 * 119.99665 * 173.93688 * 8 7 6 10 10 N 1.34773 * 120.00224 * 353.93770 * 8 7 6 11 11 C 1.46505 * 120.00213 * 179.97438 * 10 8 7 12 12 C 1.52990 * 109.47395 * 180.02562 * 11 10 8 13 13 C 1.50703 * 109.47489 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99736 * 0.02562 * 13 12 11 15 15 C 1.37868 * 120.00521 * 180.02562 * 13 12 11 16 16 N 1.31520 * 120.00064 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00321 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46998 * 59.99982 * 17 15 13 19 19 H 1.48500 * 109.47280 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47152 * 299.99929 * 17 15 13 21 21 C 1.47064 * 87.88778 * 332.71282 * 7 6 4 22 22 H 1.09007 * 113.46379 * 272.49670 * 21 7 6 23 23 C 1.52991 * 113.47096 * 142.12172 * 21 7 6 24 24 C 1.53001 * 109.47293 * 78.85949 * 23 21 7 25 25 C 1.53004 * 109.47443 * 198.85910 * 23 21 7 26 26 H 1.08999 * 109.46704 * 64.86766 * 1 2 3 27 27 H 1.09004 * 109.46438 * 184.86182 * 1 2 3 28 28 H 1.08995 * 109.47572 * 304.86312 * 1 2 3 29 29 H 1.08998 * 109.47269 * 240.00162 * 2 1 3 30 30 H 1.09004 * 109.46847 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.47413 * 299.99561 * 3 2 1 32 32 H 1.09004 * 109.46796 * 60.00255 * 3 2 1 33 33 H 1.09001 * 113.45825 * 157.94557 * 6 4 2 34 34 H 1.08999 * 113.55619 * 27.42768 * 6 4 2 35 35 H 0.96996 * 120.00125 * 0.02562 * 10 8 7 36 36 H 1.09001 * 109.46730 * 59.99926 * 11 10 8 37 37 H 1.09002 * 109.46858 * 300.00381 * 11 10 8 38 38 H 1.09001 * 109.47357 * 60.00168 * 12 11 10 39 39 H 1.09002 * 109.47313 * 299.99961 * 12 11 10 40 40 H 0.96999 * 120.00255 * 179.97438 * 16 15 13 41 41 H 1.09000 * 109.47068 * 318.86011 * 23 21 7 42 42 H 1.09002 * 109.47332 * 61.81401 * 24 23 21 43 43 H 1.09008 * 109.47063 * 181.81643 * 24 23 21 44 44 H 1.08999 * 109.47225 * 301.80999 * 24 23 21 45 45 H 1.09005 * 109.46907 * 53.67117 * 25 23 21 46 46 H 1.08996 * 109.47592 * 173.66917 * 25 23 21 47 47 H 1.08997 * 109.46944 * 293.67424 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.4887 -1.6341 1.4750 6 6 2.2689 0.1951 2.4626 7 7 3.6244 0.4448 1.9495 8 6 4.5257 1.4432 2.0351 9 8 5.6396 1.2982 1.5696 10 7 4.1924 2.6023 2.6367 11 6 5.1723 3.6873 2.7303 12 6 4.5447 4.8804 3.4536 13 6 5.5525 5.9968 3.5493 14 1 6.5417 5.8683 3.1352 15 6 5.2119 7.1821 4.1655 16 7 4.0073 7.3389 4.6695 17 14 6.4609 8.5662 4.2835 18 1 6.8742 8.9776 2.9178 19 1 5.8518 9.7242 4.9857 20 1 7.6495 8.0972 5.0401 21 6 3.5659 -0.8769 1.3072 22 1 3.8961 -1.6892 1.9549 23 6 4.2275 -0.9140 -0.0718 24 6 5.7460 -1.0029 0.0932 25 6 3.7262 -2.1352 -0.8453 26 1 -0.3633 0.4365 -0.9304 27 1 -0.3632 -1.0240 0.0871 28 1 -0.3634 0.5874 0.8432 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9563 0.8901 33 1 2.2561 -0.3347 3.4150 34 1 1.6352 1.0820 2.4644 35 1 3.3040 2.7178 3.0084 36 1 5.4772 3.9889 1.7281 37 1 6.0439 3.3427 3.2869 38 1 4.2402 4.5785 4.4558 39 1 3.6730 5.2251 2.8973 40 1 3.7677 8.1727 5.1033 41 1 3.9742 -0.0071 -0.6208 42 1 6.0015 -1.9258 0.6140 43 1 6.2191 -0.9968 -0.8888 44 1 6.0992 -0.1494 0.6719 45 1 2.6363 -2.1301 -0.8658 46 1 4.1089 -2.1015 -1.8653 47 1 4.0761 -3.0441 -0.3558 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458660356.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:17 Heat of formation + Delta-G solvation = -6.823325 kcal Electronic energy + Delta-G solvation = -23660.724196 eV Core-core repulsion = 20458.594199 eV Total energy + Delta-G solvation = -3202.129997 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.35902 -38.35478 -34.99986 -34.43728 -34.21576 -32.74116 -30.06179 -28.45647 -27.19459 -26.92227 -25.81146 -24.59050 -22.93082 -21.02434 -20.53228 -20.07547 -18.49866 -17.74243 -16.44791 -16.08952 -15.72785 -15.39445 -14.56797 -14.47192 -14.19815 -14.09465 -13.61416 -13.42193 -13.07783 -13.02757 -12.73950 -12.39718 -12.24572 -12.11724 -12.03398 -11.93902 -11.87168 -11.26704 -11.17787 -11.00405 -10.95744 -10.89185 -10.74585 -10.61494 -10.45515 -10.27919 -9.92049 -9.61338 -9.38404 -9.13682 -8.64002 -8.42315 -8.09781 -6.07500 -4.10169 2.78898 3.32569 3.36166 3.39824 3.60676 4.09963 4.29192 4.45554 4.58578 4.80574 4.89631 4.96256 5.03259 5.09389 5.24731 5.29516 5.35437 5.38301 5.45870 5.48938 5.57629 5.62153 5.73998 5.82836 5.85443 5.87244 5.92110 5.96794 6.04873 6.15397 6.19800 6.26838 6.33374 6.41852 6.43433 6.54689 6.70930 6.81527 7.24051 7.51505 7.65377 7.66381 7.91756 8.29029 8.47934 8.95003 9.12748 9.54471 11.04131 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024567 B = 0.003721 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.447652 B = 7523.971226 C = 8176.733290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.077 4.077 3 C -0.152 4.152 4 C -0.118 4.118 5 H 0.094 0.906 6 C 0.100 3.900 7 N -0.661 5.661 8 C 0.731 3.269 9 O -0.585 6.585 10 N -0.735 5.735 11 C 0.142 3.858 12 C 0.014 3.986 13 C -0.521 4.521 14 H 0.059 0.941 15 C 0.059 3.941 16 N -0.895 5.895 17 Si 0.897 3.103 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C 0.164 3.836 22 H 0.083 0.917 23 C -0.099 4.099 24 C -0.181 4.181 25 C -0.147 4.147 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.391 0.609 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.021 0.979 39 H 0.021 0.979 40 H 0.262 0.738 41 H 0.080 0.920 42 H 0.039 0.961 43 H 0.041 0.959 44 H 0.115 0.885 45 H 0.058 0.942 46 H 0.054 0.946 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.417 -19.170 -8.236 22.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.095 4.095 3 C -0.209 4.209 4 C -0.137 4.137 5 H 0.112 0.888 6 C -0.023 4.023 7 N -0.401 5.401 8 C 0.435 3.565 9 O -0.465 6.465 10 N -0.388 5.388 11 C 0.019 3.981 12 C -0.023 4.023 13 C -0.559 4.559 14 H 0.077 0.923 15 C -0.142 4.142 16 N -0.534 5.534 17 Si 0.724 3.276 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.201 1.201 21 C 0.060 3.940 22 H 0.101 0.899 23 C -0.118 4.118 24 C -0.237 4.237 25 C -0.204 4.204 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.224 0.776 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.039 0.961 39 H 0.040 0.960 40 H 0.072 0.928 41 H 0.098 0.902 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.133 0.867 45 H 0.077 0.923 46 H 0.073 0.927 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.504 -18.896 -8.446 22.016 hybrid contribution 0.168 0.816 0.462 0.952 sum -7.336 -18.080 -7.985 21.082 Atomic orbital electron populations 1.21834 0.95083 1.01468 1.01899 1.20924 0.95252 0.96644 0.96712 1.22082 1.02425 0.95059 1.01303 1.23019 0.95760 0.99078 0.95805 0.88831 1.23020 0.83514 0.99005 0.96806 1.48817 1.17253 1.17352 1.56710 1.15373 0.82543 0.79522 0.79087 1.90625 1.20061 1.80943 1.54868 1.45490 1.17740 1.14120 1.61418 1.21580 0.90379 0.85632 1.00513 1.19305 0.96735 0.90847 0.95446 1.21014 0.98900 0.98496 1.37531 0.92292 1.24986 0.95421 0.98593 0.95239 1.69949 1.19026 1.26195 1.38208 0.86575 0.81359 0.81262 0.78358 1.20106 1.21264 1.20111 1.22554 0.93216 0.84475 0.93745 0.89875 1.21316 0.96644 0.99115 0.94744 1.22454 0.94442 1.04660 1.02158 1.21894 1.00966 0.97619 0.99943 0.92721 0.92819 0.92587 0.90075 0.91353 0.93411 0.92576 0.90365 0.90322 0.77585 0.92816 0.92871 0.96082 0.96049 0.92832 0.90169 0.94223 0.93963 0.86749 0.92270 0.92721 0.92857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.18 37.16 0.34 -0.73 16 2 C -0.08 -0.68 2.22 -90.61 -0.20 -0.88 16 3 C -0.15 -1.74 7.61 37.16 0.28 -1.46 16 4 C -0.12 -0.99 3.32 -89.97 -0.30 -1.29 16 5 H 0.09 0.60 8.13 -51.93 -0.42 0.18 16 6 C 0.10 0.99 7.32 -8.37 -0.06 0.92 16 7 N -0.66 -8.84 2.04 -182.99 -0.37 -9.21 16 8 C 0.73 13.00 7.43 -86.92 -0.65 12.35 16 9 O -0.59 -12.25 13.21 5.28 0.07 -12.18 16 10 N -0.74 -13.42 5.56 -65.23 -0.36 -13.78 16 11 C 0.14 3.09 5.61 -4.04 -0.02 3.07 16 12 C 0.01 0.36 5.09 -27.89 -0.14 0.21 16 13 C -0.52 -14.58 9.11 -34.44 -0.31 -14.90 16 14 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 17 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 21 C 0.16 1.80 3.28 -72.40 -0.24 1.56 16 22 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 23 C -0.10 -1.14 1.92 -90.62 -0.17 -1.32 16 24 C -0.18 -2.48 9.09 37.16 0.34 -2.15 16 25 C -0.15 -1.28 8.67 37.16 0.32 -0.95 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.71 5.20 -51.93 -0.27 0.44 16 30 H 0.07 0.97 4.07 -51.93 -0.21 0.75 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.66 6.23 -51.93 -0.32 0.34 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.76 6.48 -51.93 -0.34 0.42 16 35 H 0.39 6.43 8.20 -40.82 -0.33 6.09 16 36 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 41 H 0.08 1.06 5.26 -51.93 -0.27 0.78 16 42 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.04 0.55 8.14 -51.92 -0.42 0.13 16 44 H 0.11 2.01 4.05 -52.39 -0.21 1.80 16 45 H 0.06 0.44 5.74 -51.93 -0.30 0.14 16 46 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 353.68 15.07 5.33 5.33 Total: -1.00 -30.90 353.68 -8.67 -39.57 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -8.14 Total: 3.29 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -0.91 Total: -3.98 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: 0.00 Total: -48.54 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.07 Total: -12.18 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.90 -8.67 -39.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458660356.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.747 kcal (2) G-P(sol) polarization free energy of solvation -30.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds