Wall clock time and date at job start Tue Mar 31 2020 06:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47270 * 2 1 4 4 C 1.52995 * 109.47025 * 119.99635 * 2 1 3 5 5 H 1.09002 * 112.94617 * 288.41233 * 4 2 1 6 6 C 1.53940 * 113.74426 * 156.67617 * 4 2 1 7 7 N 1.47583 * 86.12159 * 222.05206 * 6 4 2 8 8 C 1.34776 * 134.49345 * 204.64579 * 7 6 4 9 9 O 1.21582 * 119.99970 * 185.38347 * 8 7 6 10 10 N 1.34778 * 120.00252 * 5.38010 * 8 7 6 11 11 C 1.46496 * 120.00103 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.46926 * 180.02562 * 11 10 8 13 13 C 1.50704 * 109.46710 * 179.97438 * 12 11 10 14 14 H 1.07992 * 120.00015 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99550 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00228 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99940 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46927 * 90.00178 * 17 15 13 19 19 H 1.48496 * 109.47025 * 210.00139 * 17 15 13 20 20 H 1.48498 * 109.46705 * 330.00134 * 17 15 13 21 21 C 1.47583 * 91.01084 * 24.63830 * 7 6 4 22 22 H 1.08998 * 113.87049 * 89.67873 * 21 7 6 23 23 C 1.52998 * 113.76712 * 221.06118 * 21 7 6 24 24 C 1.53004 * 109.47357 * 271.46475 * 23 21 7 25 25 C 1.53008 * 109.47372 * 31.46261 * 23 21 7 26 26 H 1.08999 * 109.47294 * 300.00154 * 1 2 3 27 27 H 1.08997 * 109.46867 * 179.97438 * 1 2 3 28 28 H 1.09011 * 109.46818 * 59.99883 * 1 2 3 29 29 H 1.08999 * 109.47294 * 239.99845 * 2 1 3 30 30 H 1.09009 * 109.47085 * 59.99172 * 3 2 1 31 31 H 1.08992 * 109.47313 * 179.97438 * 3 2 1 32 32 H 1.09006 * 109.46856 * 299.99983 * 3 2 1 33 33 H 1.09006 * 113.76822 * 336.35356 * 6 4 2 34 34 H 1.09006 * 113.77289 * 107.74709 * 6 4 2 35 35 H 0.97005 * 119.99875 * 359.97438 * 10 8 7 36 36 H 1.09001 * 109.46674 * 299.99783 * 11 10 8 37 37 H 1.08994 * 109.47244 * 59.99628 * 11 10 8 38 38 H 1.09001 * 109.46790 * 299.99677 * 12 11 10 39 39 H 1.08994 * 109.47480 * 59.99752 * 12 11 10 40 40 H 0.96999 * 120.00212 * 179.97438 * 16 15 13 41 41 H 1.09000 * 109.47582 * 151.46266 * 23 21 7 42 42 H 1.08997 * 109.47354 * 65.04867 * 24 23 21 43 43 H 1.08996 * 109.47477 * 185.05566 * 24 23 21 44 44 H 1.09001 * 109.46437 * 305.05279 * 24 23 21 45 45 H 1.09002 * 109.46980 * 59.99898 * 25 23 21 46 46 H 1.08996 * 109.46816 * 179.97438 * 25 23 21 47 47 H 1.09002 * 109.46693 * 299.99961 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7211 1.2492 5 1 1.8827 -0.1495 2.1639 6 6 3.4665 -1.2809 1.1029 7 7 2.9583 -2.4821 1.7934 8 6 3.5237 -3.4566 2.5332 9 8 2.8556 -4.4010 2.9073 10 7 4.8297 -3.3842 2.8582 11 6 5.4443 -4.4436 3.6618 12 6 6.9228 -4.1203 3.8869 13 6 7.5549 -5.2099 4.7142 14 1 6.9614 -6.0487 5.0465 15 6 8.8909 -5.1357 5.0468 16 7 9.6137 -4.1144 4.6417 17 14 9.6743 -6.4859 6.0728 18 1 10.2116 -7.5406 5.1759 19 1 10.7801 -5.9140 6.8822 20 1 8.6540 -7.0765 6.9757 21 6 1.5823 -2.1877 1.3485 22 1 1.3244 -2.6334 0.3879 23 6 0.5213 -2.4311 2.4236 24 6 0.0485 -3.8846 2.3538 25 6 1.1212 -2.1557 3.8040 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 -0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 1.6766 1.9565 0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 3.7640 -1.4608 0.0698 34 1 4.2151 -0.7303 1.6727 35 1 5.3628 -2.6309 2.5594 36 1 4.9368 -4.5104 4.6241 37 1 5.3558 -5.3951 3.1376 38 1 7.4305 -4.0532 2.9248 39 1 7.0109 -3.1689 4.4114 40 1 10.5535 -4.0621 4.8759 41 1 -0.3253 -1.7652 2.2561 42 1 0.8745 -4.5481 2.6096 43 1 -0.7697 -4.0348 3.0581 44 1 -0.2963 -4.1063 1.3438 45 1 1.4580 -1.1203 3.8538 46 1 0.3652 -2.3287 4.5698 47 1 1.9677 -2.8217 3.9715 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458660357.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:23 Heat of formation + Delta-G solvation = -25.069137 kcal Electronic energy + Delta-G solvation = -23220.415041 eV Core-core repulsion = 20017.493846 eV Total energy + Delta-G solvation = -3202.921194 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.93217 -38.28359 -35.27194 -34.60322 -34.11011 -32.69521 -29.94858 -28.20241 -27.62720 -27.00034 -25.65809 -24.57886 -22.74235 -21.13429 -20.56588 -20.07545 -18.91430 -17.38008 -16.39933 -16.18669 -15.58625 -15.08591 -14.65262 -14.49777 -14.44715 -13.86784 -13.65216 -13.42142 -13.30569 -13.01106 -12.81324 -12.59389 -12.38037 -12.22684 -12.14348 -11.73721 -11.66994 -11.37036 -11.16659 -11.03782 -10.99997 -10.99797 -10.71893 -10.63268 -10.50799 -10.26399 -10.15420 -9.65961 -9.44029 -9.19232 -8.64382 -8.43368 -8.11093 -6.07544 -4.10065 2.77805 3.30755 3.36747 3.41392 3.62783 4.11560 4.30402 4.46648 4.49113 4.71969 4.87122 4.95932 5.03124 5.06943 5.15253 5.26769 5.29535 5.38150 5.39778 5.44424 5.56149 5.59932 5.65543 5.68069 5.81516 5.85398 5.88725 5.96551 6.01980 6.09154 6.11019 6.21490 6.27702 6.41829 6.43214 6.55757 6.66529 6.80996 7.14378 7.51157 7.65327 7.65762 7.91918 8.29178 8.49099 8.95343 9.11383 9.54571 11.04152 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025858 B = 0.003405 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.576182 B = 8222.391657 C = 9007.859190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.087 4.087 3 C -0.146 4.146 4 C -0.115 4.115 5 H 0.103 0.897 6 C 0.104 3.896 7 N -0.661 5.661 8 C 0.724 3.276 9 O -0.587 6.587 10 N -0.738 5.738 11 C 0.142 3.858 12 C 0.014 3.986 13 C -0.520 4.520 14 H 0.059 0.941 15 C 0.058 3.942 16 N -0.895 5.895 17 Si 0.897 3.103 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.272 1.272 21 C 0.167 3.833 22 H 0.085 0.915 23 C -0.090 4.090 24 C -0.162 4.162 25 C -0.149 4.149 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.391 0.609 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.021 0.979 39 H 0.021 0.979 40 H 0.262 0.738 41 H 0.073 0.927 42 H 0.093 0.907 43 H 0.045 0.955 44 H 0.043 0.957 45 H 0.045 0.955 46 H 0.046 0.954 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.768 11.705 -10.244 23.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.106 4.106 3 C -0.204 4.204 4 C -0.134 4.134 5 H 0.121 0.879 6 C -0.020 4.020 7 N -0.402 5.402 8 C 0.428 3.572 9 O -0.467 6.467 10 N -0.390 5.390 11 C 0.019 3.981 12 C -0.024 4.024 13 C -0.559 4.559 14 H 0.078 0.922 15 C -0.143 4.143 16 N -0.534 5.534 17 Si 0.724 3.276 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.197 1.197 21 C 0.064 3.936 22 H 0.102 0.898 23 C -0.109 4.109 24 C -0.219 4.219 25 C -0.206 4.206 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.224 0.776 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.039 0.961 39 H 0.040 0.960 40 H 0.071 0.929 41 H 0.091 0.909 42 H 0.112 0.888 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -17.945 10.863 -9.789 23.149 hybrid contribution 0.889 -0.299 0.322 0.991 sum -17.056 10.564 -9.467 22.184 Atomic orbital electron populations 1.21847 0.94952 1.01998 1.01718 1.21087 0.96036 0.96325 0.97152 1.21820 1.01239 0.95577 1.01729 1.23397 0.95347 0.95274 0.99380 0.87894 1.23139 0.96903 0.84570 0.97345 1.49169 1.10110 1.26721 1.54203 1.15511 0.82082 0.80888 0.78706 1.90781 1.62139 1.33187 1.60568 1.45515 1.08159 1.27770 1.57599 1.21569 0.95575 0.88085 0.92874 1.19314 0.87841 0.97769 0.97462 1.21055 0.94765 1.07040 1.32994 0.92234 1.24995 0.97274 0.95939 0.96098 1.69958 1.07646 1.29820 1.45951 0.86515 0.78973 0.81830 0.80258 1.20572 1.21186 1.19710 1.22745 0.82699 0.91672 0.96531 0.89767 1.21172 0.96632 0.97924 0.95188 1.22082 1.02615 0.96862 1.00311 1.21935 1.01966 1.01384 0.95356 0.92562 0.92401 0.92756 0.90869 0.92629 0.92447 0.92740 0.90199 0.90382 0.77599 0.92864 0.92888 0.96072 0.96045 0.92887 0.90884 0.88807 0.93591 0.93825 0.93554 0.93465 0.90548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 8.92 37.16 0.33 -0.60 16 2 C -0.09 -0.58 2.68 -90.62 -0.24 -0.83 16 3 C -0.15 -0.89 9.19 37.16 0.34 -0.55 16 4 C -0.11 -0.98 2.69 -89.70 -0.24 -1.23 16 5 H 0.10 0.92 6.76 -51.93 -0.35 0.57 16 6 C 0.10 1.04 8.01 -2.98 -0.02 1.01 16 7 N -0.66 -9.06 2.91 -176.51 -0.51 -9.57 16 8 C 0.72 13.09 7.04 -86.92 -0.61 12.48 16 9 O -0.59 -12.35 12.53 5.29 0.07 -12.28 16 10 N -0.74 -13.70 5.56 -65.23 -0.36 -14.07 16 11 C 0.14 3.12 5.61 -4.04 -0.02 3.10 16 12 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 13 C -0.52 -14.62 9.11 -34.44 -0.31 -14.94 16 14 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 17 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 21 C 0.17 1.86 2.66 -66.86 -0.18 1.68 16 22 H 0.08 0.90 8.04 -51.93 -0.42 0.49 16 23 C -0.09 -1.04 2.82 -90.61 -0.26 -1.30 16 24 C -0.16 -2.11 9.08 37.16 0.34 -1.77 16 25 C -0.15 -1.99 8.46 37.16 0.31 -1.68 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.38 7.33 -51.93 -0.38 0.00 16 28 H 0.05 0.31 8.14 -51.92 -0.42 -0.12 16 29 H 0.07 0.49 7.94 -51.93 -0.41 0.08 16 30 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.08 0.71 7.96 -51.93 -0.41 0.30 16 34 H 0.08 0.74 8.12 -51.93 -0.42 0.32 16 35 H 0.39 6.51 8.07 -40.82 -0.33 6.18 16 36 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 41 H 0.07 0.70 7.97 -51.93 -0.41 0.29 16 42 H 0.09 1.58 5.16 -51.93 -0.27 1.31 16 43 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.05 0.56 6.76 -51.93 -0.35 0.21 16 46 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.08 1.30 4.48 -51.93 -0.23 1.06 16 LS Contribution 364.32 15.07 5.49 5.49 Total: -1.00 -31.26 364.32 -9.01 -40.28 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -8.61 Total: 2.06 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -0.80 Total: -2.85 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: -0.14 Total: -49.27 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.07 Total: -12.28 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.26 -9.01 -40.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458660357.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.206 kcal (2) G-P(sol) polarization free energy of solvation -31.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds