Wall clock time and date at job start Tue Mar 31 2020 06:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47127 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47196 * 304.99671 * 4 3 2 6 6 N 1.46500 * 109.47520 * 64.99751 * 4 3 2 7 7 C 1.34781 * 119.99958 * 275.00660 * 6 4 3 8 8 O 1.21582 * 119.99774 * 359.97438 * 7 6 4 9 9 N 1.34777 * 120.00011 * 180.02562 * 7 6 4 10 10 C 1.46501 * 120.00079 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47136 * 179.97438 * 10 9 7 12 12 C 1.50704 * 109.47163 * 179.97438 * 11 10 9 13 13 H 1.08000 * 119.99659 * 0.02562 * 12 11 10 14 14 C 1.37872 * 119.99782 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00441 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 119.99741 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.46862 * 0.02562 * 16 14 12 18 18 H 1.48493 * 109.47078 * 120.00126 * 16 14 12 19 19 H 1.48498 * 109.47057 * 240.00366 * 16 14 12 20 20 C 1.53001 * 109.47328 * 184.99912 * 4 3 2 21 21 C 1.54274 * 110.03004 * 297.16782 * 20 4 3 22 22 C 1.54890 * 104.19360 * 217.10455 * 21 20 4 23 23 C 1.54890 * 102.74784 * 37.93895 * 22 21 20 24 24 C 1.53870 * 110.03485 * 180.02562 * 20 4 3 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 29 29 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 30 30 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 31 31 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 32 32 H 0.97000 * 120.00165 * 94.99729 * 6 4 3 33 33 H 0.97000 * 120.00113 * 359.97438 * 9 7 6 34 34 H 1.09002 * 109.46768 * 299.99140 * 10 9 7 35 35 H 1.08998 * 109.47035 * 59.99174 * 10 9 7 36 36 H 1.09002 * 109.46954 * 299.99472 * 11 10 9 37 37 H 1.09005 * 109.47287 * 59.99537 * 11 10 9 38 38 H 0.97000 * 120.00152 * 179.97438 * 15 14 12 39 39 H 1.08994 * 110.01742 * 58.60332 * 20 4 3 40 40 H 1.09000 * 110.48201 * 335.77756 * 21 20 4 41 41 H 1.08990 * 110.48825 * 98.42087 * 21 20 4 42 42 H 1.09001 * 110.75497 * 279.62923 * 22 21 20 43 43 H 1.08997 * 110.91180 * 156.32643 * 22 21 20 44 44 H 1.09003 * 110.48142 * 203.37686 * 23 22 21 45 45 H 1.09010 * 110.59784 * 80.79511 * 23 22 21 46 46 H 1.08999 * 110.03000 * 238.57004 * 24 20 4 47 47 H 1.09004 * 110.03260 * 359.97438 * 24 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9330 0.8533 0.8427 6 7 4.0589 0.8586 -1.2508 7 6 4.1876 -0.4781 -1.3657 8 8 3.8983 -1.1992 -0.4305 9 7 4.6379 -1.0153 -2.5168 10 6 4.7783 -2.4683 -2.6415 11 6 5.3033 -2.8120 -4.0369 12 6 5.4484 -4.3066 -4.1649 13 1 5.1914 -4.9471 -3.3342 14 6 5.9081 -4.8561 -5.3428 15 7 6.2206 -4.0761 -6.3545 16 14 6.0886 -6.7087 -5.5013 17 1 5.6748 -7.3567 -4.2309 18 1 5.2281 -7.1969 -6.6087 19 1 7.5058 -7.0450 -5.7904 20 6 4.0800 2.8796 0.1263 21 6 3.6327 3.7078 -1.0959 22 6 4.8341 4.6429 -1.3813 23 6 6.0527 3.7314 -1.0928 24 6 5.6186 2.8947 0.1277 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 4.2899 1.4340 -1.9968 33 1 4.8691 -0.4400 -3.2628 34 1 5.4791 -2.8313 -1.8897 35 1 3.8078 -2.9412 -2.4920 36 1 4.6023 -2.4490 -4.7884 37 1 6.2739 -2.3389 -4.1867 38 1 6.5444 -4.4628 -7.1831 39 1 3.7010 3.3311 1.0431 40 1 3.4448 3.0568 -1.9497 41 1 2.7436 4.2911 -0.8568 42 1 4.8249 5.5000 -0.7080 43 1 4.8340 4.9701 -2.4210 44 1 6.9296 4.3321 -0.8514 45 1 6.2578 3.0840 -1.9455 46 1 5.9867 3.3541 1.0450 47 1 6.0021 1.8781 0.0392 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458668042.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:43 Heat of formation + Delta-G solvation = -72.307494 kcal Electronic energy + Delta-G solvation = -23022.693048 eV Core-core repulsion = 19817.723445 eV Total energy + Delta-G solvation = -3204.969603 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.27197 -38.40468 -35.63864 -34.49756 -33.33033 -32.66972 -30.58015 -29.05566 -28.93373 -27.11726 -24.73130 -23.08997 -21.41652 -21.20354 -20.65167 -20.15491 -19.34903 -18.03092 -16.45062 -16.17363 -15.90110 -15.33570 -15.03599 -14.55255 -14.44940 -13.94559 -13.77863 -13.53307 -13.48081 -13.21630 -12.91959 -12.52280 -12.26382 -11.97151 -11.88469 -11.28719 -11.26421 -11.15163 -11.10418 -11.03213 -10.90650 -10.84661 -10.71167 -10.59056 -10.41928 -10.35077 -10.20808 -9.78346 -9.50680 -9.20884 -8.80673 -8.45758 -8.17624 -6.07324 -4.09652 3.15766 3.29846 3.37534 3.43213 3.69596 4.32117 4.40276 4.42233 4.48352 4.75925 4.90885 5.11189 5.14248 5.25082 5.28021 5.29969 5.32662 5.40957 5.46893 5.49367 5.56925 5.67080 5.71618 5.78850 5.82129 5.89911 5.96830 5.99826 6.08602 6.14181 6.17565 6.26015 6.35479 6.44308 6.44704 6.66941 6.79744 6.84512 7.08493 7.34394 7.61214 7.66594 7.92458 8.29434 8.52926 8.96156 9.10840 9.55126 11.04409 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018288 B = 0.003589 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.653042 B = 7800.710332 C = 8831.349854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.128 4.128 4 C 0.171 3.829 5 H 0.086 0.914 6 N -0.745 5.745 7 C 0.698 3.302 8 O -0.593 6.593 9 N -0.741 5.741 10 C 0.142 3.858 11 C 0.012 3.988 12 C -0.519 4.519 13 H 0.060 0.940 14 C 0.058 3.942 15 N -0.895 5.895 16 Si 0.896 3.104 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.283 1.283 20 C -0.099 4.099 21 C -0.122 4.122 22 C -0.126 4.126 23 C -0.125 4.125 24 C -0.122 4.122 25 H 0.051 0.949 26 H 0.047 0.953 27 H 0.046 0.954 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.391 0.609 33 H 0.391 0.609 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.021 0.979 37 H 0.021 0.979 38 H 0.261 0.739 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.066 0.934 46 H 0.061 0.939 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.476 19.034 11.123 22.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.167 4.167 4 C 0.065 3.935 5 H 0.104 0.896 6 N -0.402 5.402 7 C 0.398 3.602 8 O -0.472 6.472 9 N -0.395 5.395 10 C 0.019 3.981 11 C -0.025 4.025 12 C -0.558 4.558 13 H 0.078 0.922 14 C -0.143 4.143 15 N -0.534 5.534 16 Si 0.723 3.277 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.118 4.118 21 C -0.159 4.159 22 C -0.163 4.163 23 C -0.163 4.163 24 C -0.160 4.160 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.226 0.774 33 H 0.224 0.776 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.070 0.930 39 H 0.101 0.899 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.085 0.915 46 H 0.080 0.920 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.671 18.307 11.820 22.517 hybrid contribution 0.350 -0.432 -0.963 1.112 sum -5.321 17.875 10.857 21.580 Atomic orbital electron populations 1.21806 0.97004 1.01272 1.00781 1.21567 0.94190 0.96013 1.03780 1.22063 0.95194 0.97827 1.01600 1.20801 0.93070 0.92527 0.87109 0.89573 1.45276 1.72475 1.05529 1.16940 1.16047 0.78496 0.81914 0.83756 1.90888 1.57208 1.60056 1.39048 1.45550 1.70009 1.09847 1.14082 1.21539 1.00241 0.75756 1.00551 1.19327 0.96522 0.97195 0.89460 1.21099 1.44021 0.91501 0.99145 0.92196 1.24991 0.95247 0.98317 0.95750 1.69966 1.44750 1.34878 1.03796 0.86471 0.77714 0.85294 0.78183 1.19564 1.20966 1.20958 1.22104 0.95857 0.94629 0.99236 1.22456 0.97981 0.97661 0.97826 1.22510 0.94802 0.97838 1.01192 1.22359 0.97712 0.97945 0.98268 1.22192 0.94632 1.00940 0.98209 0.93023 0.93381 0.93444 0.91640 0.91130 0.92059 0.91819 0.77404 0.77623 0.92918 0.92922 0.96043 0.96042 0.92955 0.89874 0.91290 0.91532 0.91684 0.91636 0.91897 0.91545 0.92012 0.91089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 37.16 0.37 -1.38 16 2 C -0.12 -1.59 4.53 -26.73 -0.12 -1.72 16 3 C -0.13 -1.37 4.60 -26.73 -0.12 -1.49 16 4 C 0.17 1.88 1.80 -67.93 -0.12 1.76 16 5 H 0.09 1.14 7.58 -51.93 -0.39 0.75 16 6 N -0.74 -9.24 4.19 -58.68 -0.25 -9.49 16 7 C 0.70 11.85 7.13 -86.91 -0.62 11.23 16 8 O -0.59 -12.08 13.48 5.29 0.07 -12.01 16 9 N -0.74 -13.10 5.56 -65.23 -0.36 -13.46 16 10 C 0.14 3.07 5.61 -4.04 -0.02 3.05 16 11 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 12 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 13 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 16 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 17 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 C -0.10 -0.83 2.80 -89.50 -0.25 -1.08 16 21 C -0.12 -0.91 5.14 -25.07 -0.13 -1.04 16 22 C -0.13 -0.90 6.91 -24.74 -0.17 -1.07 16 23 C -0.13 -1.00 6.83 -25.10 -0.17 -1.18 16 24 C -0.12 -1.08 6.19 -25.65 -0.16 -1.23 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.99 7.84 -51.93 -0.41 0.58 16 29 H 0.07 1.17 5.65 -51.93 -0.29 0.87 16 30 H 0.06 0.63 7.44 -51.93 -0.39 0.24 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.39 4.12 6.85 -40.82 -0.28 3.84 16 33 H 0.39 6.04 8.49 -40.82 -0.35 5.70 16 34 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.55 6.10 -51.93 -0.32 0.24 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.57 8.14 -51.92 -0.42 0.14 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.07 0.77 7.37 -51.93 -0.38 0.38 16 LS Contribution 364.00 15.07 5.49 5.49 Total: -1.00 -30.76 364.00 -10.10 -40.86 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -8.69 Total: 4.92 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -2.07 Total: -7.26 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: 0.13 Total: -48.48 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.07 Total: -12.01 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.76 -10.10 -40.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458668042.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.444 kcal (2) G-P(sol) polarization free energy of solvation -30.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds