Wall clock time and date at job start Tue Mar 31 2020 06:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.53001 * 109.46886 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47704 * 54.99481 * 4 3 2 6 6 N 1.46502 * 109.46798 * 294.99603 * 4 3 2 7 7 C 1.34777 * 120.00376 * 85.00350 * 6 4 3 8 8 O 1.21590 * 119.99327 * 359.97438 * 7 6 4 9 9 N 1.34766 * 120.00450 * 179.97438 * 7 6 4 10 10 C 1.46504 * 120.00279 * 179.97438 * 9 7 6 11 11 C 1.52994 * 109.47455 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.47308 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00041 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00132 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00114 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00319 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46508 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47062 * 119.99487 * 16 14 12 19 19 H 1.48490 * 109.47263 * 239.99901 * 16 14 12 20 20 C 1.53000 * 109.47194 * 175.00077 * 4 3 2 21 21 C 1.54265 * 110.02925 * 297.90377 * 20 4 3 22 22 C 1.54971 * 104.15997 * 217.13804 * 21 20 4 23 23 C 1.54882 * 102.77530 * 37.88642 * 22 21 20 24 24 C 1.53873 * 110.03236 * 180.68778 * 20 4 3 25 25 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 27 27 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 28 28 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 29 29 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 30 30 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 31 31 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 32 32 H 0.97002 * 120.00091 * 264.99863 * 6 4 3 33 33 H 0.96996 * 120.00166 * 0.02562 * 9 7 6 34 34 H 1.09006 * 109.46938 * 300.00078 * 10 9 7 35 35 H 1.09000 * 109.47008 * 59.99953 * 10 9 7 36 36 H 1.09006 * 109.47008 * 299.99909 * 11 10 9 37 37 H 1.09009 * 109.47281 * 59.99762 * 11 10 9 38 38 H 0.96997 * 120.00361 * 179.97438 * 15 14 12 39 39 H 1.09000 * 110.01590 * 59.29406 * 20 4 3 40 40 H 1.09000 * 110.49045 * 335.78259 * 21 20 4 41 41 H 1.08998 * 110.49002 * 98.42918 * 21 20 4 42 42 H 1.09007 * 110.71743 * 279.57234 * 22 21 20 43 43 H 1.08999 * 110.92146 * 156.29606 * 22 21 20 44 44 H 1.09005 * 110.48599 * 203.40760 * 23 22 21 45 45 H 1.09001 * 110.60086 * 80.81984 * 23 22 21 46 46 H 1.09002 * 110.03128 * 238.56538 * 24 20 4 47 47 H 1.08999 * 110.03591 * 359.94776 * 24 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8531 -0.8426 6 7 4.0587 0.8586 1.2509 7 6 4.1875 -0.4781 1.3660 8 8 3.8976 -1.1993 0.4311 9 7 4.6376 -1.0151 2.5172 10 6 4.7771 -2.4681 2.6424 11 6 5.3020 -2.8118 4.0377 12 6 5.4449 -4.3064 4.1667 13 1 5.1874 -4.9472 3.3363 14 6 5.9052 -4.8559 5.3444 15 7 6.2202 -4.0756 6.3552 16 14 6.0830 -6.7086 5.5041 17 1 5.6677 -7.3569 4.2343 18 1 7.5001 -7.0470 5.7917 19 1 5.2232 -7.1946 6.6129 20 6 4.0800 2.8795 -0.1263 21 6 3.6161 3.4895 -1.4651 22 6 4.8141 4.3611 -1.9199 23 6 6.0369 3.5104 -1.4960 24 6 5.6185 2.8929 -0.1456 25 1 -0.3635 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 4.2898 1.4340 1.9969 33 1 4.8686 -0.4398 3.2631 34 1 3.8060 -2.9405 2.4934 35 1 5.4773 -2.8320 1.8905 36 1 6.2730 -2.3394 4.1871 37 1 4.6014 -2.4479 4.7894 38 1 6.5438 -4.4622 7.1839 39 1 3.7116 3.4802 0.7053 40 1 3.4177 2.7038 -2.1941 41 1 2.7295 4.1060 -1.3167 42 1 4.8121 5.3200 -1.4016 43 1 4.8010 4.5075 -3.0000 44 1 6.9162 4.1423 -1.3704 45 1 6.2324 2.7277 -2.2290 46 1 5.9969 3.5010 0.6762 47 1 6.0019 1.8758 -0.0645 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458668043.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:47 Heat of formation + Delta-G solvation = -75.577490 kcal Electronic energy + Delta-G solvation = -22759.217270 eV Core-core repulsion = 19554.105869 eV Total energy + Delta-G solvation = -3205.111401 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.13298 -38.44063 -35.71846 -34.51315 -33.43975 -32.68925 -30.55085 -29.19634 -28.75039 -27.08822 -24.74476 -23.06873 -21.35985 -20.87413 -20.62600 -20.27590 -19.82592 -17.79976 -16.63146 -16.26699 -15.69902 -15.35910 -15.20468 -14.52905 -14.45016 -13.99184 -13.86950 -13.52912 -13.46433 -13.12800 -12.92744 -12.34114 -12.24857 -11.93338 -11.69912 -11.41674 -11.29994 -11.23736 -11.15315 -11.03794 -11.02541 -10.83492 -10.73890 -10.59347 -10.43045 -10.34329 -10.21349 -9.79368 -9.50866 -9.21129 -8.81652 -8.45992 -8.18215 -6.07487 -4.09826 3.13165 3.29714 3.37367 3.43021 3.68698 4.32953 4.38541 4.41374 4.47368 4.78960 4.87786 5.11303 5.13945 5.24434 5.26345 5.29735 5.35894 5.40407 5.44317 5.50035 5.54479 5.66124 5.68796 5.73914 5.83613 5.89052 5.96655 5.99943 6.05249 6.11703 6.20880 6.27121 6.35061 6.43954 6.43979 6.66395 6.78309 6.83271 7.07975 7.33623 7.60913 7.66400 7.92302 8.29230 8.52458 8.95977 9.09984 9.54907 11.04247 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021771 B = 0.003221 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.811791 B = 8689.582845 C = 9568.878304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.129 4.129 4 C 0.172 3.828 5 H 0.087 0.913 6 N -0.747 5.747 7 C 0.698 3.302 8 O -0.593 6.593 9 N -0.741 5.741 10 C 0.142 3.858 11 C 0.013 3.987 12 C -0.519 4.519 13 H 0.060 0.940 14 C 0.058 3.942 15 N -0.895 5.895 16 Si 0.896 3.104 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.283 1.283 20 C -0.099 4.099 21 C -0.115 4.115 22 C -0.125 4.125 23 C -0.125 4.125 24 C -0.122 4.122 25 H 0.051 0.949 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.391 0.609 33 H 0.392 0.608 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.021 0.979 37 H 0.021 0.979 38 H 0.261 0.739 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.065 0.935 46 H 0.062 0.938 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.492 18.845 -13.371 23.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.168 4.168 4 C 0.066 3.934 5 H 0.105 0.895 6 N -0.403 5.403 7 C 0.398 3.602 8 O -0.472 6.472 9 N -0.395 5.395 10 C 0.019 3.981 11 C -0.025 4.025 12 C -0.558 4.558 13 H 0.078 0.922 14 C -0.143 4.143 15 N -0.534 5.534 16 Si 0.724 3.276 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.118 4.118 21 C -0.153 4.153 22 C -0.163 4.163 23 C -0.163 4.163 24 C -0.160 4.160 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.224 0.776 33 H 0.224 0.776 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.081 0.919 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.688 18.110 -14.055 23.619 hybrid contribution 0.349 -0.435 1.061 1.199 sum -5.339 17.675 -12.993 22.577 Atomic orbital electron populations 1.21805 0.96984 1.01284 1.00792 1.21564 0.94209 0.96000 1.03764 1.22084 0.95250 0.97858 1.01627 1.20912 0.93078 0.92389 0.87019 0.89545 1.45215 1.72565 1.05636 1.16895 1.16035 0.78491 0.81875 0.83766 1.90891 1.57190 1.60009 1.39092 1.45550 1.69988 1.09857 1.14065 1.21544 1.00252 0.75752 1.00563 1.19323 0.96522 0.97188 0.89443 1.21099 1.44009 0.91497 0.99169 0.92194 1.24998 0.95243 0.98337 0.95766 1.69966 1.44713 1.34875 1.03833 0.86466 0.77711 0.85275 0.78184 1.19560 1.20964 1.20958 1.22062 0.95796 0.95338 0.98617 1.22396 0.97824 0.98924 0.96150 1.22509 0.94852 0.98333 1.00571 1.22359 0.97697 0.99000 0.97234 1.22211 0.94669 1.01656 0.97429 0.93010 0.93382 0.93426 0.91642 0.91157 0.91534 0.92286 0.77562 0.77566 0.92919 0.92913 0.96039 0.96045 0.92949 0.90714 0.91112 0.91512 0.91664 0.91695 0.91915 0.91641 0.91916 0.91087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.91 37.16 0.37 -1.39 16 2 C -0.12 -1.60 4.53 -26.73 -0.12 -1.72 16 3 C -0.13 -1.40 4.77 -26.73 -0.13 -1.52 16 4 C 0.17 1.90 1.49 -67.93 -0.10 1.80 16 5 H 0.09 1.17 7.56 -51.93 -0.39 0.78 16 6 N -0.75 -9.29 4.43 -58.68 -0.26 -9.55 16 7 C 0.70 11.89 7.13 -86.93 -0.62 11.27 16 8 O -0.59 -12.13 13.47 5.29 0.07 -12.06 16 9 N -0.74 -13.10 5.56 -65.23 -0.36 -13.46 16 10 C 0.14 3.07 5.61 -4.04 -0.02 3.05 16 11 C 0.01 0.32 5.09 -27.89 -0.14 0.18 16 12 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 13 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.89 -26.29 13.29 55.43 0.74 -25.56 16 16 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 17 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 C -0.10 -0.84 2.56 -89.50 -0.23 -1.07 16 21 C -0.11 -0.86 5.22 -25.03 -0.13 -0.99 16 22 C -0.13 -0.88 6.91 -24.70 -0.17 -1.05 16 23 C -0.13 -1.01 6.83 -25.08 -0.17 -1.18 16 24 C -0.12 -1.08 6.20 -25.61 -0.16 -1.24 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.99 7.84 -51.93 -0.41 0.58 16 29 H 0.07 1.17 5.65 -51.93 -0.29 0.88 16 30 H 0.07 0.62 7.07 -51.93 -0.37 0.25 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.39 3.96 8.62 -40.82 -0.35 3.61 16 33 H 0.39 6.02 8.49 -40.82 -0.35 5.68 16 34 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.02 0.56 8.14 -51.92 -0.42 0.13 16 38 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.56 7.74 -51.93 -0.40 0.16 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.07 0.77 7.40 -51.93 -0.38 0.39 16 LS Contribution 366.97 15.07 5.53 5.53 Total: -1.00 -31.00 366.97 -10.17 -41.17 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -8.83 Total: 4.57 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -2.04 Total: -7.16 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: 0.11 Total: -48.57 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.07 Total: -12.06 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.00 -10.17 -41.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458668043.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.404 kcal (2) G-P(sol) polarization free energy of solvation -31.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds