Wall clock time and date at job start Tue Mar 31 2020 06:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.53001 * 109.46886 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47704 * 54.99481 * 4 3 2 6 6 N 1.46502 * 109.46798 * 294.99603 * 4 3 2 7 7 C 1.34777 * 120.00376 * 85.00350 * 6 4 3 8 8 O 1.21590 * 119.99327 * 359.97438 * 7 6 4 9 9 N 1.34766 * 120.00450 * 179.97438 * 7 6 4 10 10 C 1.46504 * 120.00279 * 179.97438 * 9 7 6 11 11 C 1.52994 * 109.47455 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.47308 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00041 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00132 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00114 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00319 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46508 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47062 * 119.99487 * 16 14 12 19 19 H 1.48490 * 109.47263 * 239.99901 * 16 14 12 20 20 C 1.53000 * 109.47194 * 175.00077 * 4 3 2 21 21 C 1.54265 * 110.02925 * 297.90377 * 20 4 3 22 22 C 1.54971 * 104.15997 * 217.13804 * 21 20 4 23 23 C 1.54882 * 102.77530 * 37.88642 * 22 21 20 24 24 C 1.53873 * 110.03236 * 180.68778 * 20 4 3 25 25 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 27 27 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 28 28 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 29 29 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 30 30 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 31 31 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 32 32 H 0.97002 * 120.00091 * 264.99863 * 6 4 3 33 33 H 0.96996 * 120.00166 * 0.02562 * 9 7 6 34 34 H 1.09006 * 109.46938 * 300.00078 * 10 9 7 35 35 H 1.09000 * 109.47008 * 59.99953 * 10 9 7 36 36 H 1.09006 * 109.47008 * 299.99909 * 11 10 9 37 37 H 1.09009 * 109.47281 * 59.99762 * 11 10 9 38 38 H 0.96997 * 120.00361 * 179.97438 * 15 14 12 39 39 H 1.09000 * 110.01590 * 59.29406 * 20 4 3 40 40 H 1.09000 * 110.49045 * 335.78259 * 21 20 4 41 41 H 1.08998 * 110.49002 * 98.42918 * 21 20 4 42 42 H 1.09007 * 110.71743 * 279.57234 * 22 21 20 43 43 H 1.08999 * 110.92146 * 156.29606 * 22 21 20 44 44 H 1.09005 * 110.48599 * 203.40760 * 23 22 21 45 45 H 1.09001 * 110.60086 * 80.81984 * 23 22 21 46 46 H 1.09002 * 110.03128 * 238.56538 * 24 20 4 47 47 H 1.08999 * 110.03591 * 359.94776 * 24 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8531 -0.8426 6 7 4.0587 0.8586 1.2509 7 6 4.1875 -0.4781 1.3660 8 8 3.8976 -1.1993 0.4311 9 7 4.6376 -1.0151 2.5172 10 6 4.7771 -2.4681 2.6424 11 6 5.3020 -2.8118 4.0377 12 6 5.4449 -4.3064 4.1667 13 1 5.1874 -4.9472 3.3363 14 6 5.9052 -4.8559 5.3444 15 7 6.2202 -4.0756 6.3552 16 14 6.0830 -6.7086 5.5041 17 1 5.6677 -7.3569 4.2343 18 1 7.5001 -7.0470 5.7917 19 1 5.2232 -7.1946 6.6129 20 6 4.0800 2.8795 -0.1263 21 6 3.6161 3.4895 -1.4651 22 6 4.8141 4.3611 -1.9199 23 6 6.0369 3.5104 -1.4960 24 6 5.6185 2.8929 -0.1456 25 1 -0.3635 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 4.2898 1.4340 1.9969 33 1 4.8686 -0.4398 3.2631 34 1 3.8060 -2.9405 2.4934 35 1 5.4773 -2.8320 1.8905 36 1 6.2730 -2.3394 4.1871 37 1 4.6014 -2.4479 4.7894 38 1 6.5438 -4.4622 7.1839 39 1 3.7116 3.4802 0.7053 40 1 3.4177 2.7038 -2.1941 41 1 2.7295 4.1060 -1.3167 42 1 4.8121 5.3200 -1.4016 43 1 4.8010 4.5075 -3.0000 44 1 6.9162 4.1423 -1.3704 45 1 6.2324 2.7277 -2.2290 46 1 5.9969 3.5010 0.6762 47 1 6.0019 1.8758 -0.0645 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458668043.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:46 Heat of formation + Delta-G solvation = -94.328617 kcal Electronic energy + Delta-G solvation = -22760.030380 eV Core-core repulsion = 19554.105869 eV Total energy + Delta-G solvation = -3205.924511 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.33129 -39.40996 -36.91492 -36.06720 -34.89379 -34.34347 -31.86864 -30.61486 -29.49629 -27.92330 -26.66209 -24.15904 -22.88910 -22.19142 -21.63381 -21.29117 -20.62832 -19.15573 -18.40910 -17.62045 -16.78722 -16.49957 -16.44285 -15.95155 -15.89186 -15.31413 -14.99584 -14.92661 -14.39891 -14.28900 -14.17355 -13.96804 -13.24886 -13.18597 -12.95315 -12.78737 -12.57798 -12.50710 -12.27595 -12.21770 -11.95676 -11.87157 -11.84015 -11.63027 -11.53282 -11.47973 -11.44853 -11.38026 -11.14811 -11.03210 -10.60613 -10.13143 -9.63374 -8.24352 -6.34513 1.40645 1.41434 1.54775 1.85487 2.28762 2.41327 3.10372 3.41606 3.59057 3.73019 3.85063 4.12863 4.16487 4.24212 4.44084 4.50445 4.51116 4.53618 4.62111 4.65514 4.75368 4.76231 4.80832 4.87186 4.89029 4.94797 5.01730 5.04577 5.11726 5.13724 5.26836 5.31357 5.33678 5.36035 5.36794 5.50314 5.52975 5.55817 5.59892 5.60618 5.74064 5.80435 6.13458 6.18122 6.78906 7.21996 7.35065 7.72151 8.87813 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021771 B = 0.003221 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.811791 B = 8689.582845 C = 9568.878304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C -0.122 4.122 4 C 0.172 3.828 5 H 0.058 0.942 6 N -0.727 5.727 7 C 0.698 3.302 8 O -0.629 6.629 9 N -0.738 5.738 10 C 0.164 3.836 11 C 0.025 3.975 12 C -0.545 4.545 13 H 0.057 0.943 14 C 0.007 3.993 15 N -0.926 5.926 16 Si 0.965 3.035 17 H -0.266 1.266 18 H -0.276 1.276 19 H -0.276 1.276 20 C -0.090 4.090 21 C -0.114 4.114 22 C -0.120 4.120 23 C -0.128 4.128 24 C -0.123 4.123 25 H 0.041 0.959 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.040 0.960 29 H 0.035 0.965 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.406 0.594 33 H 0.404 0.596 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.008 0.992 37 H 0.007 0.993 38 H 0.266 0.734 39 H 0.093 0.907 40 H 0.062 0.938 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.053 0.947 46 H 0.073 0.927 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.146 20.502 -13.656 25.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C -0.160 4.160 4 C 0.067 3.933 5 H 0.077 0.923 6 N -0.383 5.383 7 C 0.398 3.602 8 O -0.510 6.510 9 N -0.393 5.393 10 C 0.040 3.960 11 C -0.013 4.013 12 C -0.584 4.584 13 H 0.076 0.924 14 C -0.192 4.192 15 N -0.566 5.566 16 Si 0.789 3.211 17 H -0.190 1.190 18 H -0.202 1.202 19 H -0.201 1.201 20 C -0.109 4.109 21 C -0.152 4.152 22 C -0.158 4.158 23 C -0.166 4.166 24 C -0.161 4.161 25 H 0.060 0.940 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.107 0.893 31 H 0.091 0.909 32 H 0.242 0.758 33 H 0.239 0.761 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.026 0.974 37 H 0.026 0.974 38 H 0.075 0.925 39 H 0.111 0.889 40 H 0.081 0.919 41 H 0.102 0.898 42 H 0.095 0.905 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.072 0.928 46 H 0.092 0.908 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.342 19.831 -14.335 25.278 hybrid contribution 0.562 -0.912 1.121 1.551 sum -5.780 18.919 -13.214 23.790 Atomic orbital electron populations 1.21767 0.95285 1.01165 1.02208 1.21475 0.95727 0.97329 1.00848 1.22041 0.94536 0.96130 1.03330 1.21026 0.93588 0.93562 0.85119 0.92343 1.45072 1.71273 1.03954 1.18026 1.16125 0.78096 0.83149 0.82830 1.90872 1.58604 1.61345 1.40208 1.45241 1.70525 1.08434 1.15066 1.20990 0.98855 0.78098 0.98095 1.19115 0.95418 0.95929 0.90790 1.21492 1.44417 0.93015 0.99469 0.92435 1.25868 0.94675 1.03294 0.95330 1.70063 1.45192 1.36974 1.04380 0.85397 0.77984 0.79312 0.78367 1.19028 1.20162 1.20143 1.22031 0.95379 0.93350 1.00122 1.22416 0.98745 0.98955 0.95085 1.22498 0.93705 0.98383 1.01181 1.22375 0.98724 0.99008 0.96447 1.22207 0.95029 1.00386 0.98435 0.94006 0.92436 0.91420 0.94088 0.94624 0.89257 0.90923 0.75795 0.76097 0.94185 0.94163 0.97406 0.97417 0.92540 0.88873 0.91902 0.89750 0.90510 0.91021 0.91205 0.92813 0.90842 0.93678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 9.91 71.98 0.71 -2.54 16 2 C -0.12 -3.16 4.53 30.59 0.14 -3.02 16 3 C -0.12 -2.42 4.77 30.59 0.15 -2.27 16 4 C 0.17 3.67 1.49 44.99 0.07 3.73 16 5 H 0.06 1.62 7.56 -2.39 -0.02 1.60 16 6 N -0.73 -17.75 4.43 -457.82 -2.03 -19.78 16 7 C 0.70 24.25 7.13 179.06 1.28 25.53 16 8 O -0.63 -26.76 13.47 -4.00 -0.05 -26.82 16 9 N -0.74 -26.59 5.56 -478.54 -2.66 -29.25 16 10 C 0.16 7.34 5.61 86.38 0.48 7.83 16 11 C 0.03 1.29 5.09 29.85 0.15 1.44 16 12 C -0.55 -31.04 9.11 25.60 0.23 -30.81 16 13 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 14 C 0.01 0.40 5.46 84.65 0.46 0.86 16 15 N -0.93 -54.77 13.29 21.45 0.28 -54.48 16 16 Si 0.96 44.17 29.54 68.60 2.03 46.19 16 17 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 18 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 19 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 20 C -0.09 -1.32 2.56 -10.07 -0.03 -1.35 16 21 C -0.11 -1.40 5.22 31.70 0.17 -1.23 16 22 C -0.12 -1.38 6.91 31.91 0.22 -1.16 16 23 C -0.13 -1.88 6.83 31.67 0.22 -1.66 16 24 C -0.12 -2.02 6.20 31.32 0.19 -1.82 16 25 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.04 1.29 7.84 -2.39 -0.02 1.27 16 29 H 0.03 1.21 5.65 -2.39 -0.01 1.19 16 30 H 0.09 1.41 7.07 -2.39 -0.02 1.39 16 31 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.41 7.63 8.62 -92.71 -0.80 6.83 16 33 H 0.40 12.46 8.49 -92.71 -0.79 11.68 16 34 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 35 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 37 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 38 H 0.27 14.70 8.31 -92.71 -0.77 13.92 16 39 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.06 0.89 7.74 -2.39 -0.02 0.87 16 41 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 43 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 45 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.04 0.97 7.40 -2.39 -0.02 0.96 16 Total: -1.00 -68.10 366.97 1.36 -66.73 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: -0.65 Total: 23.87 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: 4.44 Total: -6.48 kcal Atomic # 7 Polarization: -99.11 SS G_CDS: -4.40 Total: -103.51 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -0.05 Total: -26.82 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -68.10 1.36 -66.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458668043.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.594 kcal (2) G-P(sol) polarization free energy of solvation -68.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds