Wall clock time and date at job start Tue Mar 31 2020 05:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47201 * 2 1 4 4 C 1.52997 * 109.47721 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46989 * 54.99551 * 4 3 2 6 6 C 1.53005 * 109.46733 * 295.00250 * 4 3 2 7 7 C 1.52999 * 109.47159 * 299.99162 * 6 4 3 8 8 C 1.52997 * 109.47317 * 300.00546 * 7 6 4 9 9 C 1.53000 * 109.47060 * 59.99960 * 8 7 6 10 10 C 1.52997 * 109.47457 * 174.99880 * 4 3 2 11 11 H 1.09002 * 109.46695 * 179.97438 * 10 4 3 12 12 C 1.52997 * 109.47232 * 299.99930 * 10 4 3 13 13 N 1.46501 * 109.46866 * 184.99942 * 12 10 4 14 14 C 1.34776 * 119.99681 * 180.02562 * 13 12 10 15 15 O 1.21588 * 120.00139 * 0.02562 * 14 13 12 16 16 N 1.34773 * 119.99922 * 180.02562 * 14 13 12 17 17 C 1.46500 * 119.99983 * 180.02562 * 16 14 13 18 18 C 1.50705 * 109.47301 * 179.97438 * 17 16 14 19 19 H 1.08002 * 119.99615 * 0.02562 * 18 17 16 20 20 C 1.37869 * 120.00084 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00447 * 0.02562 * 20 18 17 22 22 Si 1.86809 * 119.99978 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46797 * 60.00511 * 22 20 18 24 24 H 1.48494 * 109.47162 * 180.02562 * 22 20 18 25 25 H 1.48493 * 109.47085 * 300.00239 * 22 20 18 26 26 H 1.09001 * 109.47165 * 60.00267 * 1 2 3 27 27 H 1.08998 * 109.46746 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47129 * 300.00318 * 1 2 3 29 29 H 1.08998 * 109.47611 * 240.00234 * 2 1 3 30 30 H 1.09001 * 109.47165 * 119.99733 * 2 1 3 31 31 H 1.09007 * 109.47221 * 59.99501 * 3 2 1 32 32 H 1.08997 * 109.47219 * 300.00244 * 3 2 1 33 33 H 1.09000 * 109.47360 * 59.99776 * 6 4 3 34 34 H 1.09002 * 109.46935 * 179.97438 * 6 4 3 35 35 H 1.08996 * 109.46929 * 179.97438 * 7 6 4 36 36 H 1.09002 * 109.46716 * 60.00455 * 7 6 4 37 37 H 1.09002 * 109.47153 * 299.99641 * 8 7 6 38 38 H 1.09001 * 109.46832 * 179.97438 * 8 7 6 39 39 H 1.08992 * 109.47399 * 59.99823 * 9 8 7 40 40 H 1.09004 * 109.46724 * 180.02562 * 9 8 7 41 41 H 1.09002 * 109.47223 * 304.99821 * 12 10 4 42 42 H 1.09001 * 109.46547 * 65.00156 * 12 10 4 43 43 H 0.96998 * 120.00018 * 0.02562 * 13 12 10 44 44 H 0.96997 * 120.00364 * 359.97438 * 16 14 13 45 45 H 1.09005 * 109.46856 * 299.99942 * 17 16 14 46 46 H 1.08995 * 109.47571 * 59.99490 * 17 16 14 47 47 H 0.96995 * 120.00914 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9337 0.8530 -0.8409 6 6 4.0794 0.8332 1.3083 7 6 3.5689 1.6608 2.4896 8 6 4.0789 3.0977 2.3639 9 6 3.5694 3.7071 1.0562 10 6 4.0800 2.8796 -0.1251 11 1 5.1700 2.8796 -0.1242 12 6 3.5705 3.4890 -1.4327 13 7 4.1547 4.8206 -1.6111 14 6 3.8463 5.5513 -2.7007 15 8 3.0828 5.1056 -3.5355 16 7 4.3841 6.7761 -2.8651 17 6 4.0484 7.5707 -4.0493 18 6 4.7755 8.8895 -3.9921 19 1 5.4232 9.1132 -3.1573 20 6 4.6146 9.8099 -5.0058 21 7 3.8262 9.5373 -6.0226 22 14 5.5164 11.4444 -4.9352 23 1 6.9809 11.2005 -4.9012 24 1 5.1760 12.2498 -6.1354 25 1 5.1088 12.1822 -3.7127 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 3.7161 -0.1906 1.3979 34 1 5.1694 0.8328 1.3086 35 1 3.9315 1.2263 3.4212 36 1 2.4789 1.6607 2.4891 37 1 5.1690 3.0978 2.3644 38 1 3.7149 3.6874 3.2052 39 1 2.4795 3.7071 1.0558 40 1 3.9332 4.7308 0.9665 41 1 3.8593 2.8507 -2.2678 42 1 2.4842 3.5707 -1.3965 43 1 4.7635 5.1763 -0.9449 44 1 4.9929 7.1319 -2.1990 45 1 4.3473 7.0292 -4.9468 46 1 2.9735 7.7496 -4.0741 47 1 3.7127 10.1850 -6.7357 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458729305.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:25 Heat of formation + Delta-G solvation = -78.957991 kcal Electronic energy + Delta-G solvation = -22620.409646 eV Core-core repulsion = 19415.151656 eV Total energy + Delta-G solvation = -3205.257990 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.13127 -38.82331 -34.95929 -34.41485 -33.91024 -32.31570 -31.25607 -30.74456 -27.42264 -26.53421 -25.13603 -22.91029 -22.33504 -21.83212 -21.10121 -20.07090 -18.56073 -17.90416 -16.32742 -15.88592 -15.64413 -15.38752 -14.96863 -14.67052 -14.43463 -14.14048 -14.04682 -13.52063 -13.35936 -13.06838 -12.91033 -12.72658 -12.52477 -12.07209 -11.95301 -11.87912 -11.80823 -11.50358 -11.31536 -11.19234 -11.04343 -10.94552 -10.84311 -10.60138 -10.27691 -10.24270 -10.10559 -10.07809 -9.34924 -9.32774 -8.70976 -8.58532 -7.68915 -6.11782 -4.18321 3.27923 3.31943 3.33643 3.49086 4.03935 4.35550 4.37986 4.47110 4.52990 4.82913 4.84497 4.95013 5.00822 5.11278 5.14818 5.23138 5.24008 5.27422 5.30963 5.37957 5.46436 5.49352 5.60776 5.65148 5.73005 5.78822 5.81991 5.88479 5.89716 5.94049 6.01119 6.05211 6.12132 6.12979 6.23000 6.28145 6.40354 6.97709 7.18908 7.57243 7.60852 7.62204 7.96651 8.09888 8.81019 9.01383 9.39447 9.53980 10.98497 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028114 B = 0.002913 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.696816 B = 9611.040051 C =10284.303149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.125 4.125 4 C -0.078 4.078 5 H 0.072 0.928 6 C -0.113 4.113 7 C -0.121 4.121 8 C -0.118 4.118 9 C -0.117 4.117 10 C -0.093 4.093 11 H 0.075 0.925 12 C 0.145 3.855 13 N -0.757 5.757 14 C 0.692 3.308 15 O -0.603 6.603 16 N -0.731 5.731 17 C 0.267 3.733 18 C -0.542 4.542 19 H 0.061 0.939 20 C 0.063 3.937 21 N -0.886 5.886 22 Si 0.904 3.096 23 H -0.276 1.276 24 H -0.285 1.285 25 H -0.276 1.276 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.064 0.936 43 H 0.390 0.610 44 H 0.385 0.615 45 H 0.024 0.976 46 H 0.024 0.976 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.278 -18.002 18.404 25.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.162 4.162 4 C -0.097 4.097 5 H 0.090 0.910 6 C -0.151 4.151 7 C -0.159 4.159 8 C -0.156 4.156 9 C -0.154 4.154 10 C -0.111 4.111 11 H 0.093 0.907 12 C 0.020 3.980 13 N -0.414 5.414 14 C 0.391 3.609 15 O -0.482 6.482 16 N -0.383 5.383 17 C 0.146 3.854 18 C -0.580 4.580 19 H 0.080 0.920 20 C -0.140 4.140 21 N -0.524 5.524 22 Si 0.731 3.269 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.223 0.777 44 H 0.217 0.783 45 H 0.042 0.958 46 H 0.042 0.958 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.082 -18.305 17.389 25.271 hybrid contribution 1.045 1.268 0.545 1.731 sum -0.037 -17.037 17.933 24.736 Atomic orbital electron populations 1.21780 0.96118 1.01307 1.01904 1.21569 0.95653 0.97188 1.01785 1.21866 0.94751 0.96756 1.02812 1.21074 0.95691 0.95018 0.97897 0.90970 1.21571 1.00349 0.98872 0.94296 1.21574 1.01087 0.95451 0.97766 1.21524 1.00655 0.95931 0.97479 1.21630 1.01330 0.98769 0.93676 1.21398 1.00580 0.94925 0.94238 0.90684 1.21165 0.98021 0.82794 0.96004 1.45183 1.52827 1.18605 1.24825 1.16170 0.81426 0.81486 0.81792 1.90865 1.40571 1.72238 1.44517 1.45706 1.49473 1.15658 1.27472 1.18953 0.96397 0.88573 0.81454 1.21200 1.28662 1.00690 1.07453 0.92038 1.24943 0.95291 0.98773 0.95024 1.69968 1.36660 1.35890 1.09832 0.86478 0.79952 0.82913 0.77553 1.20107 1.21089 1.20113 0.92605 0.93073 0.92925 0.92180 0.92082 0.91279 0.91289 0.91814 0.92159 0.92487 0.91638 0.92137 0.92214 0.91433 0.91853 0.92227 0.91817 0.77730 0.78268 0.95816 0.95817 0.92429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 37.16 0.37 -0.81 16 2 C -0.12 -0.96 5.69 -26.73 -0.15 -1.11 16 3 C -0.12 -1.07 3.76 -26.73 -0.10 -1.17 16 4 C -0.08 -0.65 2.19 -90.62 -0.20 -0.85 16 5 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 6 C -0.11 -0.81 5.21 -26.73 -0.14 -0.95 16 7 C -0.12 -0.85 5.65 -26.73 -0.15 -1.01 16 8 C -0.12 -0.90 5.92 -26.73 -0.16 -1.06 16 9 C -0.12 -1.04 4.80 -26.73 -0.13 -1.17 16 10 C -0.09 -0.87 2.00 -90.62 -0.18 -1.06 16 11 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 12 C 0.14 1.92 4.57 -4.04 -0.02 1.90 16 13 N -0.76 -11.59 5.29 -65.23 -0.34 -11.93 16 14 C 0.69 14.75 8.57 -86.92 -0.74 14.01 16 15 O -0.60 -15.58 16.34 5.29 0.09 -15.49 16 16 N -0.73 -16.10 5.55 -66.41 -0.37 -16.47 16 17 C 0.27 7.34 5.43 -5.19 -0.03 7.31 16 18 C -0.54 -15.00 9.28 -34.44 -0.32 -15.32 16 19 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 20 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 21 N -0.89 -26.54 13.29 55.43 0.74 -25.81 16 22 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.43 6.56 -51.93 -0.34 0.09 16 31 H 0.07 0.59 4.82 -51.93 -0.25 0.34 16 32 H 0.07 0.70 6.29 -51.93 -0.33 0.37 16 33 H 0.06 0.42 6.56 -51.93 -0.34 0.08 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.48 6.32 -51.93 -0.33 0.15 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.64 6.54 -51.93 -0.34 0.30 16 40 H 0.06 0.59 7.18 -51.93 -0.37 0.22 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.06 0.92 6.60 -51.93 -0.34 0.57 16 43 H 0.39 4.82 7.67 -40.82 -0.31 4.51 16 44 H 0.39 7.24 8.34 -40.82 -0.34 6.90 16 45 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 358.39 15.07 5.40 5.40 Total: -1.00 -32.57 358.39 -9.88 -42.46 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -8.32 Total: 5.35 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -2.05 Total: 0.41 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: 0.02 Total: -54.21 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: 0.09 Total: -15.49 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.57 -9.88 -42.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458729305.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.501 kcal (2) G-P(sol) polarization free energy of solvation -32.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds