Wall clock time and date at job start Tue Mar 31 2020 05:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47042 * 2 1 4 4 C 1.53000 * 109.47211 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47161 * 54.99871 * 4 3 2 6 6 C 1.53004 * 109.46787 * 294.99935 * 4 3 2 7 7 C 1.53000 * 109.46787 * 179.97438 * 6 4 3 8 8 C 1.52995 * 109.47445 * 59.99918 * 7 6 4 9 9 C 1.53004 * 109.47161 * 300.00227 * 8 7 6 10 10 C 1.52992 * 109.47243 * 59.99410 * 9 8 7 11 11 H 1.09008 * 109.47284 * 60.00800 * 10 9 8 12 12 C 1.53004 * 109.47243 * 179.97438 * 10 9 8 13 13 N 1.46499 * 109.47198 * 295.00407 * 12 10 9 14 14 C 1.34777 * 120.00065 * 179.97438 * 13 12 10 15 15 O 1.21593 * 119.99923 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00128 * 180.02562 * 14 13 12 17 17 C 1.46498 * 119.99828 * 180.27942 * 16 14 13 18 18 C 1.50700 * 109.46769 * 179.72341 * 17 16 14 19 19 H 1.07997 * 120.00357 * 359.97438 * 18 17 16 20 20 C 1.37886 * 119.99789 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99860 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00087 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47186 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.46905 * 119.99897 * 22 20 18 25 25 H 1.48494 * 109.47159 * 240.00164 * 22 20 18 26 26 H 1.08993 * 109.47116 * 60.00253 * 1 2 3 27 27 H 1.09001 * 109.46853 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46310 * 299.99876 * 1 2 3 29 29 H 1.09002 * 109.47049 * 240.00129 * 2 1 3 30 30 H 1.09001 * 109.47441 * 120.00281 * 2 1 3 31 31 H 1.08994 * 109.47719 * 60.00174 * 3 2 1 32 32 H 1.09007 * 109.46837 * 299.99817 * 3 2 1 33 33 H 1.09001 * 109.46771 * 299.99612 * 6 4 3 34 34 H 1.08994 * 109.46866 * 59.99956 * 6 4 3 35 35 H 1.09004 * 109.47144 * 179.97438 * 7 6 4 36 36 H 1.09000 * 109.47161 * 299.99935 * 7 6 4 37 37 H 1.09008 * 109.47193 * 59.99321 * 8 7 6 38 38 H 1.08998 * 109.47557 * 179.97438 * 8 7 6 39 39 H 1.09000 * 109.46911 * 299.99656 * 9 8 7 40 40 H 1.09003 * 109.47103 * 179.97438 * 9 8 7 41 41 H 1.09000 * 109.47211 * 174.99718 * 12 10 9 42 42 H 1.09006 * 109.46815 * 54.99954 * 12 10 9 43 43 H 0.97000 * 120.00386 * 359.97438 * 13 12 10 44 44 H 0.97001 * 119.99727 * 359.97438 * 16 14 13 45 45 H 1.09004 * 109.46963 * 299.72135 * 17 16 14 46 46 H 1.08994 * 109.47567 * 59.72287 * 17 16 14 47 47 H 0.96999 * 120.00067 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8532 -0.8427 6 6 4.0805 0.8327 1.3065 7 6 5.6105 0.8322 1.3055 8 6 6.1210 2.2689 1.1795 9 6 5.6104 2.8788 -0.1276 10 6 4.0805 2.8793 -0.1267 11 1 3.7178 3.4690 0.7153 12 6 3.5699 3.4897 -1.4335 13 7 3.9580 4.9009 -1.4977 14 6 3.6145 5.6463 -2.5667 15 8 2.9821 5.1476 -3.4777 16 7 3.9720 6.9445 -2.6261 17 6 3.5933 7.7562 -3.7853 18 6 4.1048 9.1620 -3.6027 19 1 4.6563 9.4246 -2.7121 20 6 3.8685 10.1130 -4.5728 21 7 3.1965 9.7933 -5.6571 22 14 4.5019 11.8556 -4.3462 23 1 5.2213 11.9564 -3.0510 24 1 5.4302 12.1929 -5.4551 25 1 3.3582 12.8027 -4.3527 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6768 1.9564 0.8899 32 1 1.6767 1.9563 -0.8901 33 1 3.7175 1.4221 2.1485 34 1 3.7172 -0.1910 1.3960 35 1 5.9743 0.3982 2.2369 36 1 5.9732 0.2426 0.4635 37 1 5.7583 2.8586 2.0215 38 1 7.2110 2.2686 1.1793 39 1 5.9731 2.2892 -0.9696 40 1 5.9738 3.9026 -0.2172 41 1 2.4836 3.4094 -1.4720 42 1 4.0040 2.9548 -2.2783 43 1 4.4622 5.2989 -0.7708 44 1 4.4761 7.3424 -1.8991 45 1 4.0276 7.3259 -4.6877 46 1 2.5074 7.7738 -3.8775 47 1 3.0300 10.4624 -6.3394 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458729307.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:29 Heat of formation + Delta-G solvation = -82.933857 kcal Electronic energy + Delta-G solvation = -22463.234956 eV Core-core repulsion = 19257.804559 eV Total energy + Delta-G solvation = -3205.430397 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.88564 -38.73032 -35.15109 -34.66083 -33.92178 -32.31436 -31.29111 -30.76849 -27.39652 -26.37636 -25.12342 -22.99513 -22.30576 -21.13359 -20.71348 -20.23394 -19.77577 -17.96435 -16.17845 -15.73339 -15.42690 -15.29016 -15.10736 -14.67242 -14.35225 -14.24163 -14.00910 -13.66996 -13.25138 -13.16067 -12.96494 -12.88011 -12.24382 -12.13751 -11.93166 -11.87160 -11.65098 -11.49981 -11.28985 -11.12782 -11.08836 -10.90332 -10.87685 -10.78634 -10.58737 -10.27352 -10.06220 -10.02450 -9.33756 -9.31174 -8.71613 -8.58383 -7.68946 -6.12364 -4.18537 3.25919 3.32170 3.35361 3.49147 4.03825 4.35143 4.38126 4.43809 4.53023 4.77986 4.83408 4.97089 5.02455 5.07909 5.14747 5.22881 5.23730 5.27637 5.33025 5.34119 5.45100 5.51576 5.60308 5.69181 5.70307 5.78785 5.81272 5.88455 5.89634 5.95994 5.96945 6.06386 6.10237 6.13659 6.15323 6.29665 6.37973 6.97657 7.18850 7.57576 7.60998 7.62032 7.96308 8.09680 8.81298 9.01288 9.39345 9.53861 10.98012 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023296 B = 0.002980 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.628071 B = 9394.115533 C =10311.990767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.123 4.123 4 C -0.077 4.077 5 H 0.073 0.927 6 C -0.113 4.113 7 C -0.120 4.120 8 C -0.119 4.119 9 C -0.115 4.115 10 C -0.093 4.093 11 H 0.075 0.925 12 C 0.143 3.857 13 N -0.757 5.757 14 C 0.692 3.308 15 O -0.603 6.603 16 N -0.731 5.731 17 C 0.267 3.733 18 C -0.540 4.540 19 H 0.063 0.937 20 C 0.062 3.938 21 N -0.886 5.886 22 Si 0.904 3.096 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.059 0.941 43 H 0.389 0.611 44 H 0.385 0.615 45 H 0.024 0.976 46 H 0.024 0.976 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.530 -19.160 16.788 25.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.162 4.162 3 C -0.160 4.160 4 C -0.096 4.096 5 H 0.091 0.909 6 C -0.150 4.150 7 C -0.158 4.158 8 C -0.157 4.157 9 C -0.153 4.153 10 C -0.111 4.111 11 H 0.093 0.907 12 C 0.018 3.982 13 N -0.414 5.414 14 C 0.391 3.609 15 O -0.482 6.482 16 N -0.383 5.383 17 C 0.146 3.854 18 C -0.579 4.579 19 H 0.081 0.919 20 C -0.141 4.141 21 N -0.523 5.523 22 Si 0.731 3.269 23 H -0.197 1.197 24 H -0.208 1.208 25 H -0.208 1.208 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.223 0.777 44 H 0.217 0.783 45 H 0.042 0.958 46 H 0.042 0.958 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.854 -19.514 15.710 25.121 hybrid contribution 0.771 1.378 0.679 1.719 sum 2.625 -18.136 16.390 24.585 Atomic orbital electron populations 1.21787 0.96070 1.01339 1.01962 1.21567 0.95703 0.97071 1.01825 1.21798 0.94734 0.96809 1.02695 1.21107 0.95069 0.95195 0.98260 0.90893 1.21617 0.95270 1.00764 0.97389 1.21546 0.95826 0.96929 1.01476 1.21536 1.00096 0.96128 0.97907 1.21599 0.94728 1.01192 0.97741 1.21413 0.95694 0.96344 0.97693 0.90656 1.21200 0.99783 0.80592 0.96578 1.45177 1.62575 1.11141 1.22524 1.16173 0.80370 0.81974 0.82359 1.90866 1.46057 1.72496 1.38775 1.45707 1.58937 1.08302 1.25361 1.18962 0.96056 0.88127 0.82299 1.21274 1.36671 0.94375 1.05536 0.91936 1.24953 0.94993 0.99265 0.94888 1.69992 1.39270 1.34558 1.08499 0.86363 0.78583 0.83794 0.78160 1.19681 1.20834 1.20829 0.92568 0.93042 0.92882 0.92114 0.92073 0.91969 0.91041 0.92053 0.91802 0.92342 0.92059 0.92087 0.92167 0.91728 0.91724 0.91686 0.92221 0.77736 0.78262 0.95805 0.95813 0.92550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.83 16 2 C -0.12 -0.97 5.69 -26.73 -0.15 -1.12 16 3 C -0.12 -1.07 4.48 -26.73 -0.12 -1.19 16 4 C -0.08 -0.65 1.72 -90.62 -0.16 -0.80 16 5 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 6 C -0.11 -0.81 4.96 -26.73 -0.13 -0.95 16 7 C -0.12 -0.85 5.92 -26.73 -0.16 -1.01 16 8 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 9 C -0.12 -1.04 5.08 -26.73 -0.14 -1.17 16 10 C -0.09 -0.88 1.75 -90.62 -0.16 -1.04 16 11 H 0.08 0.71 8.14 -51.92 -0.42 0.28 16 12 C 0.14 1.90 4.86 -4.04 -0.02 1.88 16 13 N -0.76 -11.58 5.29 -65.22 -0.34 -11.93 16 14 C 0.69 14.74 8.57 -86.92 -0.74 14.00 16 15 O -0.60 -15.57 16.34 5.28 0.09 -15.49 16 16 N -0.73 -16.09 5.55 -66.41 -0.37 -16.46 16 17 C 0.27 7.31 5.43 -5.19 -0.03 7.28 16 18 C -0.54 -14.94 9.28 -34.44 -0.32 -15.26 16 19 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 21 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 22 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.43 6.57 -51.93 -0.34 0.09 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.73 6.07 -51.93 -0.32 0.41 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.43 6.56 -51.93 -0.34 0.09 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.46 8.14 -51.92 -0.42 0.03 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.61 7.18 -51.93 -0.37 0.23 16 41 H 0.06 0.93 6.07 -51.93 -0.32 0.62 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.39 4.82 7.67 -40.82 -0.31 4.51 16 44 H 0.39 7.25 8.34 -40.82 -0.34 6.91 16 45 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 364.98 15.07 5.50 5.50 Total: -1.00 -32.58 364.98 -10.06 -42.64 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -8.64 Total: 5.04 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -2.01 Total: 0.38 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: 0.02 Total: -54.16 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: 0.09 Total: -15.49 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.58 -10.06 -42.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458729307.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.297 kcal (2) G-P(sol) polarization free energy of solvation -32.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds