Wall clock time and date at job start Tue Mar 31 2020 05:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47042 * 2 1 4 4 C 1.53000 * 109.47211 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47161 * 54.99871 * 4 3 2 6 6 C 1.53004 * 109.46787 * 294.99935 * 4 3 2 7 7 C 1.53000 * 109.46787 * 179.97438 * 6 4 3 8 8 C 1.52995 * 109.47445 * 59.99918 * 7 6 4 9 9 C 1.53004 * 109.47161 * 300.00227 * 8 7 6 10 10 C 1.52992 * 109.47243 * 59.99410 * 9 8 7 11 11 H 1.09008 * 109.47284 * 60.00800 * 10 9 8 12 12 C 1.53004 * 109.47243 * 179.97438 * 10 9 8 13 13 N 1.46499 * 109.47198 * 295.00407 * 12 10 9 14 14 C 1.34777 * 120.00065 * 179.97438 * 13 12 10 15 15 O 1.21593 * 119.99923 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00128 * 180.02562 * 14 13 12 17 17 C 1.46498 * 119.99828 * 180.27942 * 16 14 13 18 18 C 1.50700 * 109.46769 * 179.72341 * 17 16 14 19 19 H 1.07997 * 120.00357 * 359.97438 * 18 17 16 20 20 C 1.37886 * 119.99789 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99860 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00087 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47186 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.46905 * 119.99897 * 22 20 18 25 25 H 1.48494 * 109.47159 * 240.00164 * 22 20 18 26 26 H 1.08993 * 109.47116 * 60.00253 * 1 2 3 27 27 H 1.09001 * 109.46853 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46310 * 299.99876 * 1 2 3 29 29 H 1.09002 * 109.47049 * 240.00129 * 2 1 3 30 30 H 1.09001 * 109.47441 * 120.00281 * 2 1 3 31 31 H 1.08994 * 109.47719 * 60.00174 * 3 2 1 32 32 H 1.09007 * 109.46837 * 299.99817 * 3 2 1 33 33 H 1.09001 * 109.46771 * 299.99612 * 6 4 3 34 34 H 1.08994 * 109.46866 * 59.99956 * 6 4 3 35 35 H 1.09004 * 109.47144 * 179.97438 * 7 6 4 36 36 H 1.09000 * 109.47161 * 299.99935 * 7 6 4 37 37 H 1.09008 * 109.47193 * 59.99321 * 8 7 6 38 38 H 1.08998 * 109.47557 * 179.97438 * 8 7 6 39 39 H 1.09000 * 109.46911 * 299.99656 * 9 8 7 40 40 H 1.09003 * 109.47103 * 179.97438 * 9 8 7 41 41 H 1.09000 * 109.47211 * 174.99718 * 12 10 9 42 42 H 1.09006 * 109.46815 * 54.99954 * 12 10 9 43 43 H 0.97000 * 120.00386 * 359.97438 * 13 12 10 44 44 H 0.97001 * 119.99727 * 359.97438 * 16 14 13 45 45 H 1.09004 * 109.46963 * 299.72135 * 17 16 14 46 46 H 1.08994 * 109.47567 * 59.72287 * 17 16 14 47 47 H 0.96999 * 120.00067 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8532 -0.8427 6 6 4.0805 0.8327 1.3065 7 6 5.6105 0.8322 1.3055 8 6 6.1210 2.2689 1.1795 9 6 5.6104 2.8788 -0.1276 10 6 4.0805 2.8793 -0.1267 11 1 3.7178 3.4690 0.7153 12 6 3.5699 3.4897 -1.4335 13 7 3.9580 4.9009 -1.4977 14 6 3.6145 5.6463 -2.5667 15 8 2.9821 5.1476 -3.4777 16 7 3.9720 6.9445 -2.6261 17 6 3.5933 7.7562 -3.7853 18 6 4.1048 9.1620 -3.6027 19 1 4.6563 9.4246 -2.7121 20 6 3.8685 10.1130 -4.5728 21 7 3.1965 9.7933 -5.6571 22 14 4.5019 11.8556 -4.3462 23 1 5.2213 11.9564 -3.0510 24 1 5.4302 12.1929 -5.4551 25 1 3.3582 12.8027 -4.3527 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6768 1.9564 0.8899 32 1 1.6767 1.9563 -0.8901 33 1 3.7175 1.4221 2.1485 34 1 3.7172 -0.1910 1.3960 35 1 5.9743 0.3982 2.2369 36 1 5.9732 0.2426 0.4635 37 1 5.7583 2.8586 2.0215 38 1 7.2110 2.2686 1.1793 39 1 5.9731 2.2892 -0.9696 40 1 5.9738 3.9026 -0.2172 41 1 2.4836 3.4094 -1.4720 42 1 4.0040 2.9548 -2.2783 43 1 4.4622 5.2989 -0.7708 44 1 4.4761 7.3424 -1.8991 45 1 4.0276 7.3259 -4.6877 46 1 2.5074 7.7738 -3.8775 47 1 3.0300 10.4624 -6.3394 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458729307.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:28 Heat of formation + Delta-G solvation = -103.682700 kcal Electronic energy + Delta-G solvation = -22464.134694 eV Core-core repulsion = 19257.804559 eV Total energy + Delta-G solvation = -3206.330134 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.09580 -40.03201 -36.33681 -35.87630 -35.54033 -34.33981 -32.25978 -31.54461 -29.26654 -27.32920 -26.15335 -24.56728 -23.44400 -21.96647 -21.86585 -21.34302 -20.69855 -19.68584 -18.04853 -17.39475 -16.62130 -16.49133 -16.11281 -16.05685 -15.44148 -15.30991 -15.04532 -14.83070 -14.62787 -14.21458 -14.03465 -13.92172 -13.83855 -13.58573 -13.01182 -12.85064 -12.81157 -12.72402 -12.60410 -12.21171 -12.17095 -11.93514 -11.85122 -11.75913 -11.47026 -11.44165 -11.28250 -11.24722 -10.81306 -10.76848 -10.70901 -10.21929 -9.55087 -8.27996 -6.44417 1.43752 1.45499 1.58711 1.92953 2.26196 2.40309 3.06986 3.55334 3.66767 3.68444 3.84366 4.06463 4.19647 4.25820 4.37403 4.40947 4.44232 4.56569 4.60428 4.66575 4.74868 4.79360 4.85287 4.88647 5.00046 5.04834 5.09932 5.10595 5.18147 5.25432 5.27401 5.28221 5.31729 5.36939 5.43045 5.44532 5.49125 5.49932 5.58376 5.59519 5.68163 5.70496 5.85929 6.28617 6.67785 7.25022 7.33459 7.74362 8.84753 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023296 B = 0.002980 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.628071 B = 9394.115533 C =10311.990767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.122 4.122 3 C -0.122 4.122 4 C -0.073 4.073 5 H 0.066 0.934 6 C -0.108 4.108 7 C -0.120 4.120 8 C -0.115 4.115 9 C -0.115 4.115 10 C -0.080 4.080 11 H 0.085 0.915 12 C 0.142 3.858 13 N -0.730 5.730 14 C 0.689 3.311 15 O -0.652 6.652 16 N -0.724 5.724 17 C 0.285 3.715 18 C -0.553 4.553 19 H 0.084 0.916 20 C 0.002 3.998 21 N -0.931 5.931 22 Si 0.987 3.013 23 H -0.253 1.253 24 H -0.279 1.279 25 H -0.279 1.279 26 H 0.043 0.957 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.049 0.951 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.055 0.945 40 H 0.061 0.939 41 H 0.054 0.946 42 H 0.045 0.955 43 H 0.409 0.591 44 H 0.404 0.596 45 H -0.016 1.016 46 H -0.016 1.016 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.964 -18.961 19.594 27.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.159 4.159 3 C -0.159 4.159 4 C -0.092 4.092 5 H 0.085 0.915 6 C -0.145 4.145 7 C -0.157 4.157 8 C -0.153 4.153 9 C -0.153 4.153 10 C -0.098 4.098 11 H 0.104 0.896 12 C 0.018 3.982 13 N -0.387 5.387 14 C 0.388 3.612 15 O -0.535 6.535 16 N -0.377 5.377 17 C 0.162 3.838 18 C -0.591 4.591 19 H 0.102 0.898 20 C -0.197 4.197 21 N -0.570 5.570 22 Si 0.810 3.190 23 H -0.176 1.176 24 H -0.204 1.204 25 H -0.204 1.204 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.245 0.755 44 H 0.240 0.760 45 H 0.002 0.998 46 H 0.002 0.998 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.327 -19.346 18.605 27.046 hybrid contribution 0.292 1.217 -0.204 1.268 sum 3.618 -18.130 18.401 26.084 Atomic orbital electron populations 1.21800 0.96171 1.01812 1.01508 1.21551 0.95616 0.96400 1.02324 1.21766 0.94987 0.97355 1.01788 1.21077 0.94773 0.94264 0.99128 0.91517 1.21581 0.95397 1.01207 0.96311 1.21551 0.95589 0.96556 1.02017 1.21512 1.00422 0.96427 0.96930 1.21598 0.93994 1.01111 0.98565 1.21342 0.96186 0.96923 0.95391 0.89644 1.21370 0.99285 0.79083 0.98468 1.44949 1.61251 1.11469 1.21033 1.16369 0.79907 0.81850 0.83041 1.90833 1.48205 1.73369 1.41079 1.45293 1.59375 1.08443 1.24628 1.18401 0.93327 0.89270 0.82816 1.21631 1.36837 0.94199 1.06448 0.89799 1.26089 0.94854 1.04525 0.94240 1.70155 1.40641 1.36519 1.09699 0.85076 0.77968 0.77043 0.78892 1.17601 1.20439 1.20428 0.93828 0.92125 0.92548 0.92465 0.90649 0.91564 0.93223 0.91544 0.90867 0.91103 0.92372 0.91423 0.91655 0.92599 0.91985 0.92756 0.93696 0.75473 0.76034 0.99783 0.99774 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 9.91 71.98 0.71 -1.60 16 2 C -0.12 -1.75 5.69 30.60 0.17 -1.58 16 3 C -0.12 -2.02 4.48 30.59 0.14 -1.88 16 4 C -0.07 -1.13 1.72 -10.79 -0.02 -1.15 16 5 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 6 C -0.11 -1.27 4.96 30.60 0.15 -1.12 16 7 C -0.12 -1.38 5.92 30.59 0.18 -1.20 16 8 C -0.12 -1.46 5.92 30.59 0.18 -1.28 16 9 C -0.12 -1.88 5.08 30.59 0.16 -1.72 16 10 C -0.08 -1.40 1.75 -10.80 -0.02 -1.42 16 11 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 12 C 0.14 3.78 4.86 86.38 0.42 4.20 16 13 N -0.73 -22.05 5.29 -478.52 -2.53 -24.58 16 14 C 0.69 29.98 8.57 179.05 1.53 31.51 16 15 O -0.65 -35.22 16.34 -4.01 -0.07 -35.29 16 16 N -0.72 -32.26 5.55 -482.30 -2.68 -34.94 16 17 C 0.29 16.25 5.43 85.63 0.46 16.71 16 18 C -0.55 -30.67 9.28 25.60 0.24 -30.44 16 19 H 0.08 4.20 7.60 -2.91 -0.02 4.17 16 20 C 0.00 0.13 5.46 84.66 0.46 0.59 16 21 N -0.93 -57.07 13.29 21.45 0.28 -56.78 16 22 Si 0.99 42.76 29.54 68.60 2.03 44.78 16 23 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 24 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 25 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 26 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 0.89 6.57 -2.39 -0.02 0.87 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.05 1.04 6.07 -2.38 -0.01 1.03 16 33 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.07 0.76 6.56 -2.39 -0.02 0.75 16 35 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 36 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 38 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.06 1.04 7.18 -2.39 -0.02 1.02 16 41 H 0.05 1.60 6.07 -2.39 -0.01 1.59 16 42 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 43 H 0.41 9.41 7.67 -92.71 -0.71 8.70 16 44 H 0.40 14.79 8.34 -92.71 -0.77 14.01 16 45 H -0.02 -1.01 8.14 -2.38 -0.02 -1.03 16 46 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 47 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -72.90 364.98 1.27 -71.63 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: -0.54 Total: 25.54 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: 4.77 Total: 9.63 kcal Atomic # 7 Polarization: -111.37 SS G_CDS: -4.92 Total: -116.30 kcal Atomic # 8 Polarization: -35.22 SS G_CDS: -0.07 Total: -35.29 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -72.90 1.27 -71.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458729307.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.054 kcal (2) G-P(sol) polarization free energy of solvation -72.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds