Wall clock time and date at job start Tue Mar 31 2020 05:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47069 * 304.99600 * 4 3 2 6 6 C 1.52993 * 109.47345 * 65.00157 * 4 3 2 7 7 C 1.53000 * 109.47345 * 180.02562 * 6 4 3 8 8 C 1.53006 * 109.46846 * 300.00008 * 7 6 4 9 9 C 1.52993 * 109.47155 * 59.99875 * 8 7 6 10 10 C 1.53000 * 109.47345 * 299.99819 * 9 8 7 11 11 H 1.09002 * 109.47069 * 300.00558 * 10 9 8 12 12 C 1.53003 * 109.47345 * 180.02562 * 10 9 8 13 13 N 1.46499 * 109.46590 * 65.00177 * 12 10 9 14 14 C 1.34776 * 119.99582 * 179.97438 * 13 12 10 15 15 O 1.21588 * 120.00230 * 359.97438 * 14 13 12 16 16 N 1.34778 * 120.00156 * 180.02562 * 14 13 12 17 17 C 1.46497 * 120.00147 * 180.02562 * 16 14 13 18 18 C 1.50703 * 109.47187 * 179.97438 * 17 16 14 19 19 H 1.08003 * 119.99682 * 359.97438 * 18 17 16 20 20 C 1.37881 * 120.00233 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99650 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 119.99941 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47346 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47148 * 120.00177 * 22 20 18 25 25 H 1.48502 * 109.47121 * 239.99873 * 22 20 18 26 26 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 27 27 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 28 28 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 30 30 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 31 31 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 32 32 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 33 33 H 1.09002 * 109.47179 * 299.99584 * 6 4 3 34 34 H 1.08993 * 109.47639 * 59.99724 * 6 4 3 35 35 H 1.09001 * 109.47624 * 179.97438 * 7 6 4 36 36 H 1.09002 * 109.47069 * 59.99442 * 7 6 4 37 37 H 1.08993 * 109.46769 * 299.99438 * 8 7 6 38 38 H 1.08996 * 109.46751 * 179.97438 * 8 7 6 39 39 H 1.09002 * 109.47179 * 180.02562 * 9 8 7 40 40 H 1.09002 * 109.47493 * 60.00117 * 9 8 7 41 41 H 1.09002 * 109.47013 * 185.00099 * 12 10 9 42 42 H 1.08997 * 109.47157 * 305.00346 * 12 10 9 43 43 H 0.96994 * 120.00440 * 359.97438 * 13 12 10 44 44 H 0.97006 * 119.99700 * 359.97438 * 16 14 13 45 45 H 1.08997 * 109.47439 * 299.99487 * 17 16 14 46 46 H 1.09003 * 109.47449 * 59.99485 * 17 16 14 47 47 H 0.97004 * 119.99824 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 1 3.9336 0.8528 0.8410 6 6 4.0794 0.8329 -1.3082 7 6 5.6094 0.8322 -1.3086 8 6 6.1201 2.2691 -1.1825 9 6 5.6106 2.8785 0.1251 10 6 4.0806 2.8791 0.1254 11 1 3.7174 3.4690 -0.7162 12 6 3.5712 3.4892 1.4328 13 7 3.9594 4.9003 1.4970 14 6 3.6159 5.6457 2.5661 15 8 2.9835 5.1471 3.4770 16 7 3.9726 6.9441 2.6250 17 6 3.5998 7.7541 3.7874 18 6 4.1154 9.1587 3.6071 19 1 4.6661 9.4215 2.7160 20 6 3.8841 10.1082 4.5797 21 7 3.2139 9.7880 5.6650 22 14 4.5226 11.8493 4.3558 23 1 5.2399 11.9506 3.0596 24 1 3.3820 12.8000 4.3667 25 1 5.4541 12.1812 5.4637 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.7161 -0.1908 -1.3978 34 1 3.7158 1.4224 -2.1498 35 1 5.9724 0.3977 -2.2400 36 1 5.9727 0.2424 -0.4670 37 1 5.7569 2.8588 -2.0241 38 1 7.2100 2.2685 -1.1823 39 1 5.9740 3.9022 0.2147 40 1 5.9739 2.2886 0.9667 41 1 2.4848 3.4090 1.4721 42 1 4.0058 2.9540 2.2771 43 1 4.4636 5.2982 0.7702 44 1 4.4768 7.3420 1.8981 45 1 2.5142 7.7748 3.8827 46 1 4.0353 7.3203 4.6875 47 1 3.0508 10.4561 6.3491 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458729308.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:33 Heat of formation + Delta-G solvation = -82.926164 kcal Electronic energy + Delta-G solvation = -22463.250514 eV Core-core repulsion = 19257.820451 eV Total energy + Delta-G solvation = -3205.430063 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.88583 -38.73086 -35.15204 -34.66094 -33.92203 -32.31451 -31.29126 -30.76918 -27.39648 -26.37661 -25.12320 -22.99472 -22.30580 -21.13424 -20.71361 -20.23394 -19.77592 -17.96446 -16.17831 -15.73349 -15.42765 -15.29013 -15.10737 -14.67245 -14.35207 -14.24194 -14.00941 -13.66986 -13.25164 -13.16078 -12.96514 -12.88014 -12.24420 -12.13739 -11.93159 -11.87138 -11.65103 -11.50012 -11.29013 -11.12766 -11.08859 -10.90358 -10.87658 -10.78621 -10.58750 -10.27361 -10.06163 -10.02510 -9.33765 -9.31144 -8.71625 -8.58403 -7.68935 -6.12367 -4.18532 3.25909 3.32187 3.35381 3.49157 4.03842 4.35152 4.38125 4.43844 4.52969 4.77981 4.83409 4.97083 5.02457 5.07912 5.14752 5.22889 5.23748 5.27620 5.33011 5.34113 5.45116 5.51579 5.60315 5.69199 5.70291 5.78806 5.81257 5.88434 5.89642 5.96011 5.96972 6.06414 6.10259 6.13630 6.15305 6.29662 6.37985 6.97645 7.18847 7.57586 7.61000 7.62023 7.96321 8.09685 8.81291 9.01281 9.39355 9.53869 10.98014 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023310 B = 0.002980 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.891377 B = 9394.586644 C =10313.307481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.123 4.123 4 C -0.077 4.077 5 H 0.073 0.927 6 C -0.113 4.113 7 C -0.120 4.120 8 C -0.119 4.119 9 C -0.115 4.115 10 C -0.093 4.093 11 H 0.075 0.925 12 C 0.143 3.857 13 N -0.757 5.757 14 C 0.692 3.308 15 O -0.603 6.603 16 N -0.731 5.731 17 C 0.267 3.733 18 C -0.540 4.540 19 H 0.062 0.938 20 C 0.062 3.938 21 N -0.886 5.886 22 Si 0.904 3.096 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.059 0.941 43 H 0.389 0.611 44 H 0.385 0.615 45 H 0.024 0.976 46 H 0.024 0.976 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.495 -19.149 -16.807 25.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.162 4.162 3 C -0.160 4.160 4 C -0.096 4.096 5 H 0.091 0.909 6 C -0.150 4.150 7 C -0.158 4.158 8 C -0.157 4.157 9 C -0.153 4.153 10 C -0.111 4.111 11 H 0.093 0.907 12 C 0.018 3.982 13 N -0.414 5.414 14 C 0.391 3.609 15 O -0.482 6.482 16 N -0.383 5.383 17 C 0.146 3.854 18 C -0.579 4.579 19 H 0.081 0.919 20 C -0.141 4.141 21 N -0.523 5.523 22 Si 0.731 3.269 23 H -0.197 1.197 24 H -0.208 1.208 25 H -0.208 1.208 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.223 0.777 44 H 0.217 0.783 45 H 0.042 0.958 46 H 0.042 0.958 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.818 -19.503 -15.730 25.122 hybrid contribution 0.777 1.375 -0.676 1.718 sum 2.594 -18.128 -16.406 24.587 Atomic orbital electron populations 1.21785 0.96071 1.01340 1.01962 1.21564 0.95703 0.97073 1.01826 1.21798 0.94733 0.96808 1.02695 1.21106 0.95071 0.95197 0.98255 0.90893 1.21614 0.95274 1.00765 0.97384 1.21548 0.95825 0.96926 1.01480 1.21533 1.00097 0.96127 0.97903 1.21600 0.94732 1.01194 0.97738 1.21416 0.95697 0.96346 0.97689 0.90655 1.21199 0.99787 0.80594 0.96571 1.45175 1.62569 1.11143 1.22530 1.16172 0.80384 0.81963 0.82356 1.90865 1.46044 1.72500 1.38781 1.45708 1.59056 1.08325 1.25220 1.18963 0.96109 0.88167 0.82208 1.21274 1.36665 0.94496 1.05418 0.91938 1.24951 0.95002 0.99258 0.94890 1.69993 1.39380 1.34586 1.08359 0.86362 0.78595 0.83781 0.78157 1.19683 1.20829 1.20835 0.92569 0.92884 0.93042 0.92074 0.92114 0.91035 0.91975 0.91805 0.92053 0.92340 0.92066 0.92080 0.92168 0.91725 0.91727 0.91685 0.92221 0.77735 0.78262 0.95803 0.95817 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.15 0.37 -0.83 16 2 C -0.12 -0.97 5.69 -26.74 -0.15 -1.12 16 3 C -0.12 -1.07 4.47 -26.73 -0.12 -1.19 16 4 C -0.08 -0.65 1.72 -90.62 -0.16 -0.80 16 5 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 6 C -0.11 -0.81 4.96 -26.73 -0.13 -0.95 16 7 C -0.12 -0.85 5.92 -26.73 -0.16 -1.01 16 8 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 9 C -0.12 -1.04 5.08 -26.73 -0.14 -1.17 16 10 C -0.09 -0.88 1.75 -90.61 -0.16 -1.04 16 11 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 12 C 0.14 1.90 4.86 -4.04 -0.02 1.88 16 13 N -0.76 -11.58 5.29 -65.22 -0.34 -11.93 16 14 C 0.69 14.74 8.57 -86.92 -0.74 14.00 16 15 O -0.60 -15.57 16.34 5.29 0.09 -15.49 16 16 N -0.73 -16.09 5.55 -66.41 -0.37 -16.46 16 17 C 0.27 7.31 5.43 -5.19 -0.03 7.28 16 18 C -0.54 -14.94 9.28 -34.44 -0.32 -15.26 16 19 H 0.06 1.62 7.60 -52.48 -0.40 1.22 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 21 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 22 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.43 6.56 -51.93 -0.34 0.09 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.73 6.08 -51.93 -0.32 0.41 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.43 6.56 -51.93 -0.34 0.09 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.61 7.18 -51.93 -0.37 0.23 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.93 6.07 -51.93 -0.32 0.62 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.39 4.82 7.67 -40.82 -0.31 4.51 16 44 H 0.39 7.25 8.34 -40.82 -0.34 6.91 16 45 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 364.98 15.07 5.50 5.50 Total: -1.00 -32.58 364.98 -10.06 -42.64 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -8.64 Total: 5.03 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -2.01 Total: 0.38 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: 0.02 Total: -54.16 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: 0.09 Total: -15.49 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.58 -10.06 -42.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458729308.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.289 kcal (2) G-P(sol) polarization free energy of solvation -32.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds