Wall clock time and date at job start Tue Mar 31 2020 05:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47069 * 304.99600 * 4 3 2 6 6 C 1.52993 * 109.47345 * 65.00157 * 4 3 2 7 7 C 1.53000 * 109.47345 * 180.02562 * 6 4 3 8 8 C 1.53006 * 109.46846 * 300.00008 * 7 6 4 9 9 C 1.52993 * 109.47155 * 59.99875 * 8 7 6 10 10 C 1.53000 * 109.47345 * 299.99819 * 9 8 7 11 11 H 1.09002 * 109.47069 * 300.00558 * 10 9 8 12 12 C 1.53003 * 109.47345 * 180.02562 * 10 9 8 13 13 N 1.46499 * 109.46590 * 65.00177 * 12 10 9 14 14 C 1.34776 * 119.99582 * 179.97438 * 13 12 10 15 15 O 1.21588 * 120.00230 * 359.97438 * 14 13 12 16 16 N 1.34778 * 120.00156 * 180.02562 * 14 13 12 17 17 C 1.46497 * 120.00147 * 180.02562 * 16 14 13 18 18 C 1.50703 * 109.47187 * 179.97438 * 17 16 14 19 19 H 1.08003 * 119.99682 * 359.97438 * 18 17 16 20 20 C 1.37881 * 120.00233 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99650 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 119.99941 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47346 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47148 * 120.00177 * 22 20 18 25 25 H 1.48502 * 109.47121 * 239.99873 * 22 20 18 26 26 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 27 27 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 28 28 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 30 30 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 31 31 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 32 32 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 33 33 H 1.09002 * 109.47179 * 299.99584 * 6 4 3 34 34 H 1.08993 * 109.47639 * 59.99724 * 6 4 3 35 35 H 1.09001 * 109.47624 * 179.97438 * 7 6 4 36 36 H 1.09002 * 109.47069 * 59.99442 * 7 6 4 37 37 H 1.08993 * 109.46769 * 299.99438 * 8 7 6 38 38 H 1.08996 * 109.46751 * 179.97438 * 8 7 6 39 39 H 1.09002 * 109.47179 * 180.02562 * 9 8 7 40 40 H 1.09002 * 109.47493 * 60.00117 * 9 8 7 41 41 H 1.09002 * 109.47013 * 185.00099 * 12 10 9 42 42 H 1.08997 * 109.47157 * 305.00346 * 12 10 9 43 43 H 0.96994 * 120.00440 * 359.97438 * 13 12 10 44 44 H 0.97006 * 119.99700 * 359.97438 * 16 14 13 45 45 H 1.08997 * 109.47439 * 299.99487 * 17 16 14 46 46 H 1.09003 * 109.47449 * 59.99485 * 17 16 14 47 47 H 0.97004 * 119.99824 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 1 3.9336 0.8528 0.8410 6 6 4.0794 0.8329 -1.3082 7 6 5.6094 0.8322 -1.3086 8 6 6.1201 2.2691 -1.1825 9 6 5.6106 2.8785 0.1251 10 6 4.0806 2.8791 0.1254 11 1 3.7174 3.4690 -0.7162 12 6 3.5712 3.4892 1.4328 13 7 3.9594 4.9003 1.4970 14 6 3.6159 5.6457 2.5661 15 8 2.9835 5.1471 3.4770 16 7 3.9726 6.9441 2.6250 17 6 3.5998 7.7541 3.7874 18 6 4.1154 9.1587 3.6071 19 1 4.6661 9.4215 2.7160 20 6 3.8841 10.1082 4.5797 21 7 3.2139 9.7880 5.6650 22 14 4.5226 11.8493 4.3558 23 1 5.2399 11.9506 3.0596 24 1 3.3820 12.8000 4.3667 25 1 5.4541 12.1812 5.4637 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.7161 -0.1908 -1.3978 34 1 3.7158 1.4224 -2.1498 35 1 5.9724 0.3977 -2.2400 36 1 5.9727 0.2424 -0.4670 37 1 5.7569 2.8588 -2.0241 38 1 7.2100 2.2685 -1.1823 39 1 5.9740 3.9022 0.2147 40 1 5.9739 2.2886 0.9667 41 1 2.4848 3.4090 1.4721 42 1 4.0058 2.9540 2.2771 43 1 4.4636 5.2982 0.7702 44 1 4.4768 7.3420 1.8981 45 1 2.5142 7.7748 3.8827 46 1 4.0353 7.3203 4.6875 47 1 3.0508 10.4561 6.3491 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458729308.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:32 Heat of formation + Delta-G solvation = -103.675168 kcal Electronic energy + Delta-G solvation = -22464.150258 eV Core-core repulsion = 19257.820451 eV Total energy + Delta-G solvation = -3206.329808 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.09627 -40.03216 -36.33689 -35.87709 -35.54078 -34.33997 -32.25947 -31.54560 -29.26625 -27.32976 -26.15298 -24.56734 -23.44347 -21.96706 -21.86588 -21.34303 -20.69867 -19.68599 -18.04841 -17.39470 -16.62169 -16.49139 -16.11372 -16.05644 -15.44148 -15.31001 -15.04519 -14.83069 -14.62804 -14.21474 -14.03462 -13.92204 -13.83827 -13.58593 -13.01239 -12.85085 -12.81134 -12.72386 -12.60381 -12.21175 -12.17126 -11.93532 -11.85139 -11.75911 -11.46995 -11.44141 -11.28257 -11.24726 -10.81318 -10.76895 -10.70856 -10.21937 -9.55083 -8.28004 -6.44416 1.43766 1.45486 1.58731 1.92964 2.26220 2.40317 3.07003 3.55334 3.66805 3.68467 3.84323 4.06443 4.19632 4.25818 4.37414 4.40965 4.44247 4.56567 4.60432 4.66555 4.74880 4.79384 4.85286 4.88662 5.00046 5.04853 5.09933 5.10603 5.18130 5.25452 5.27392 5.28216 5.31754 5.36977 5.43007 5.44550 5.49116 5.49927 5.58372 5.59511 5.68168 5.70493 5.85946 6.28636 6.67771 7.25035 7.33464 7.74370 8.84752 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023310 B = 0.002980 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.891377 B = 9394.586644 C =10313.307481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.122 4.122 3 C -0.122 4.122 4 C -0.073 4.073 5 H 0.066 0.934 6 C -0.108 4.108 7 C -0.120 4.120 8 C -0.115 4.115 9 C -0.115 4.115 10 C -0.080 4.080 11 H 0.085 0.915 12 C 0.142 3.858 13 N -0.730 5.730 14 C 0.689 3.311 15 O -0.652 6.652 16 N -0.724 5.724 17 C 0.285 3.715 18 C -0.553 4.553 19 H 0.084 0.916 20 C 0.002 3.998 21 N -0.931 5.931 22 Si 0.987 3.013 23 H -0.253 1.253 24 H -0.279 1.279 25 H -0.279 1.279 26 H 0.043 0.957 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.055 0.945 41 H 0.054 0.946 42 H 0.045 0.955 43 H 0.409 0.591 44 H 0.404 0.596 45 H -0.016 1.016 46 H -0.016 1.016 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.929 -18.950 -19.612 27.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.159 4.159 3 C -0.159 4.159 4 C -0.092 4.092 5 H 0.085 0.915 6 C -0.145 4.145 7 C -0.157 4.157 8 C -0.153 4.153 9 C -0.153 4.153 10 C -0.098 4.098 11 H 0.104 0.896 12 C 0.018 3.982 13 N -0.387 5.387 14 C 0.388 3.612 15 O -0.535 6.535 16 N -0.377 5.377 17 C 0.162 3.838 18 C -0.591 4.591 19 H 0.102 0.898 20 C -0.197 4.197 21 N -0.570 5.570 22 Si 0.810 3.190 23 H -0.176 1.176 24 H -0.204 1.204 25 H -0.204 1.204 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.245 0.755 44 H 0.240 0.760 45 H 0.002 0.998 46 H 0.002 0.998 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.291 -19.336 -18.624 27.047 hybrid contribution 0.297 1.214 0.207 1.267 sum 3.588 -18.121 -18.417 26.086 Atomic orbital electron populations 1.21798 0.96171 1.01813 1.01509 1.21548 0.95616 0.96402 1.02325 1.21766 0.94987 0.97354 1.01789 1.21076 0.94774 0.94266 0.99124 0.91518 1.21578 0.95402 1.01210 0.96306 1.21552 0.95588 0.96554 1.02021 1.21509 1.00424 0.96426 0.96926 1.21599 0.93997 1.01113 0.98563 1.21345 0.96192 0.96925 0.95384 0.89643 1.21369 0.99287 0.79084 0.98465 1.44948 1.61245 1.11471 1.21039 1.16368 0.79919 0.81838 0.83039 1.90832 1.48191 1.73373 1.41085 1.45294 1.59502 1.08473 1.24475 1.18402 0.93373 0.89298 0.82745 1.21631 1.36829 0.94321 1.06332 0.89801 1.26088 0.94875 1.04507 0.94241 1.70156 1.40754 1.36546 1.09557 0.85075 0.77965 0.77043 0.78891 1.17603 1.20426 1.20442 0.93828 0.92549 0.92125 0.90651 0.92465 0.93216 0.91569 0.90869 0.91543 0.91102 0.92380 0.91416 0.91657 0.91985 0.92597 0.92755 0.93694 0.75473 0.76034 0.99765 0.99794 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 9.91 71.98 0.71 -1.60 16 2 C -0.12 -1.75 5.69 30.59 0.17 -1.58 16 3 C -0.12 -2.02 4.47 30.59 0.14 -1.88 16 4 C -0.07 -1.13 1.72 -10.79 -0.02 -1.15 16 5 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 6 C -0.11 -1.27 4.96 30.59 0.15 -1.12 16 7 C -0.12 -1.38 5.92 30.60 0.18 -1.20 16 8 C -0.12 -1.46 5.92 30.59 0.18 -1.28 16 9 C -0.12 -1.88 5.08 30.59 0.16 -1.72 16 10 C -0.08 -1.40 1.75 -10.79 -0.02 -1.42 16 11 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 12 C 0.14 3.78 4.86 86.38 0.42 4.20 16 13 N -0.73 -22.04 5.29 -478.53 -2.53 -24.58 16 14 C 0.69 29.98 8.57 179.05 1.53 31.51 16 15 O -0.65 -35.22 16.34 -3.99 -0.07 -35.28 16 16 N -0.72 -32.26 5.55 -482.29 -2.68 -34.94 16 17 C 0.29 16.25 5.43 85.63 0.46 16.71 16 18 C -0.55 -30.67 9.28 25.60 0.24 -30.44 16 19 H 0.08 4.19 7.60 -2.91 -0.02 4.17 16 20 C 0.00 0.13 5.46 84.66 0.46 0.59 16 21 N -0.93 -57.07 13.29 21.45 0.28 -56.78 16 22 Si 0.99 42.76 29.54 68.60 2.03 44.78 16 23 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 24 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 25 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 26 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.07 0.89 6.56 -2.39 -0.02 0.87 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.05 1.04 6.08 -2.39 -0.01 1.03 16 32 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16 33 H 0.07 0.76 6.56 -2.39 -0.02 0.75 16 34 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.06 1.04 7.18 -2.39 -0.02 1.02 16 40 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.05 1.60 6.07 -2.39 -0.01 1.59 16 42 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.41 9.41 7.67 -92.71 -0.71 8.70 16 44 H 0.40 14.78 8.34 -92.70 -0.77 14.01 16 45 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 46 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 47 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -72.90 364.98 1.27 -71.63 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: -0.54 Total: 25.53 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: 4.77 Total: 9.63 kcal Atomic # 7 Polarization: -111.37 SS G_CDS: -4.92 Total: -116.30 kcal Atomic # 8 Polarization: -35.22 SS G_CDS: -0.07 Total: -35.28 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -72.90 1.27 -71.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458729308.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.048 kcal (2) G-P(sol) polarization free energy of solvation -72.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds