Wall clock time and date at job start Tue Mar 31 2020 05:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47085 * 2 1 4 4 C 1.52994 * 109.46953 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47368 * 305.00091 * 4 3 2 6 6 C 1.53003 * 109.47350 * 65.00431 * 4 3 2 7 7 C 1.52994 * 109.46945 * 59.99533 * 6 4 3 8 8 C 1.53005 * 109.47099 * 60.00218 * 7 6 4 9 9 C 1.52996 * 109.47324 * 299.99749 * 8 7 6 10 10 C 1.53004 * 109.47134 * 185.00497 * 4 3 2 11 11 H 1.08999 * 109.47217 * 180.02562 * 10 4 3 12 12 C 1.52996 * 109.47336 * 59.99783 * 10 4 3 13 13 N 1.46498 * 109.47059 * 175.00083 * 12 10 4 14 14 C 1.34777 * 119.99828 * 179.72339 * 13 12 10 15 15 O 1.21593 * 119.99949 * 0.28071 * 14 13 12 16 16 N 1.34777 * 120.00128 * 180.27942 * 14 13 12 17 17 C 1.46499 * 120.00065 * 180.02562 * 16 14 13 18 18 C 1.50703 * 109.47138 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00043 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00213 * 179.97438 * 18 17 16 21 21 N 1.31520 * 119.99609 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00201 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47001 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47188 * 120.00103 * 22 20 18 25 25 H 1.48497 * 109.47104 * 240.00206 * 22 20 18 26 26 H 1.08998 * 109.46996 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47575 * 300.00026 * 1 2 3 28 28 H 1.08998 * 109.46960 * 60.00006 * 1 2 3 29 29 H 1.08999 * 109.47156 * 240.00309 * 2 1 3 30 30 H 1.08998 * 109.46960 * 119.99994 * 2 1 3 31 31 H 1.08999 * 109.46871 * 60.00135 * 3 2 1 32 32 H 1.08998 * 109.47216 * 299.99837 * 3 2 1 33 33 H 1.08995 * 109.46731 * 300.00022 * 6 4 3 34 34 H 1.08994 * 109.46929 * 179.97438 * 6 4 3 35 35 H 1.09000 * 109.47864 * 300.00473 * 7 6 4 36 36 H 1.09001 * 109.47328 * 180.02562 * 7 6 4 37 37 H 1.09005 * 109.47165 * 179.97438 * 8 7 6 38 38 H 1.08999 * 109.46900 * 60.00147 * 8 7 6 39 39 H 1.09000 * 109.47017 * 300.00357 * 9 8 7 40 40 H 1.08995 * 109.47011 * 179.97438 * 9 8 7 41 41 H 1.09004 * 109.47066 * 55.00351 * 12 10 4 42 42 H 1.08994 * 109.46974 * 295.00498 * 12 10 4 43 43 H 0.97001 * 120.00384 * 0.02562 * 13 12 10 44 44 H 0.97000 * 119.99549 * 359.97438 * 16 14 13 45 45 H 1.09000 * 109.47602 * 299.99940 * 17 16 14 46 46 H 1.09006 * 109.46868 * 59.99976 * 17 16 14 47 47 H 0.96997 * 119.99506 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9330 0.8532 0.8427 6 6 4.0805 0.8327 -1.3064 7 6 3.5710 1.6600 -2.4883 8 6 4.0809 3.0971 -2.3625 9 6 3.5704 3.7068 -1.0555 10 6 4.0799 2.8795 0.1265 11 1 5.1699 2.8796 0.1265 12 6 3.5694 3.4893 1.4335 13 7 4.1535 4.8209 1.6121 14 6 3.8402 5.5540 2.6987 15 8 3.0767 5.1081 3.5334 16 7 4.3731 6.7813 2.8602 17 6 4.0330 7.5779 4.0417 18 6 4.7561 8.8988 3.9822 19 1 5.4039 9.1227 3.1475 20 6 4.5899 9.8220 4.9927 21 7 3.8006 9.5495 6.0089 22 14 5.4856 11.4595 4.9185 23 1 6.3050 11.5199 3.6816 24 1 4.4949 12.5657 4.9099 25 1 6.3685 11.5949 6.1048 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.7172 -0.1910 -1.3960 34 1 5.1705 0.8332 -1.3061 35 1 2.4810 1.6601 -2.4888 36 1 3.9343 1.2254 -3.4195 37 1 3.7183 3.6863 -3.2048 38 1 5.1709 3.0971 -2.3621 39 1 2.4804 3.7068 -1.0559 40 1 3.9340 4.7304 -0.9657 41 1 3.8574 2.8512 2.2690 42 1 2.4832 3.5710 1.3964 43 1 4.7623 5.1768 0.9460 44 1 4.9825 7.1368 2.1945 45 1 2.9574 7.7529 4.0647 46 1 4.3329 7.0401 4.9412 47 1 3.6834 10.1991 6.7196 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458729310.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:37 Heat of formation + Delta-G solvation = -79.041015 kcal Electronic energy + Delta-G solvation = -22621.370611 eV Core-core repulsion = 19416.109021 eV Total energy + Delta-G solvation = -3205.261591 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.13135 -38.82274 -34.95954 -34.41525 -33.91059 -32.31650 -31.25588 -30.74478 -27.42406 -26.53499 -25.13682 -22.91109 -22.33716 -21.83226 -21.10137 -20.07106 -18.56109 -17.90416 -16.32936 -15.89034 -15.64506 -15.38904 -14.96894 -14.66747 -14.43441 -14.13867 -14.04657 -13.51939 -13.36102 -13.06585 -12.91020 -12.72695 -12.52470 -12.07393 -11.96165 -11.88784 -11.80919 -11.50499 -11.31538 -11.19280 -11.04341 -10.90022 -10.88187 -10.60200 -10.27931 -10.24412 -10.10555 -10.07853 -9.33697 -9.31154 -8.71693 -8.58856 -7.68988 -6.12355 -4.18548 3.25915 3.32178 3.35373 3.49222 4.03857 4.35384 4.37955 4.47122 4.52986 4.82889 4.84481 4.95004 5.00810 5.11240 5.14831 5.23126 5.23752 5.27399 5.30992 5.37918 5.46400 5.49349 5.60769 5.65141 5.73031 5.78790 5.82001 5.88474 5.89723 5.94032 6.01099 6.05224 6.12112 6.12973 6.22971 6.28153 6.40326 6.97696 7.18845 7.57580 7.60994 7.62000 7.96347 8.09673 8.81294 9.01289 9.39365 9.53875 10.98032 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028084 B = 0.002914 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.766324 B = 9607.446853 C =10279.861033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.125 4.125 4 C -0.078 4.078 5 H 0.072 0.928 6 C -0.113 4.113 7 C -0.121 4.121 8 C -0.118 4.118 9 C -0.117 4.117 10 C -0.093 4.093 11 H 0.075 0.925 12 C 0.145 3.855 13 N -0.757 5.757 14 C 0.692 3.308 15 O -0.603 6.603 16 N -0.731 5.731 17 C 0.267 3.733 18 C -0.540 4.540 19 H 0.062 0.938 20 C 0.062 3.938 21 N -0.886 5.886 22 Si 0.904 3.096 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.064 0.936 43 H 0.390 0.610 44 H 0.385 0.615 45 H 0.024 0.976 46 H 0.024 0.976 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.209 -18.043 -18.395 25.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.162 4.162 4 C -0.097 4.097 5 H 0.090 0.910 6 C -0.151 4.151 7 C -0.159 4.159 8 C -0.156 4.156 9 C -0.154 4.154 10 C -0.111 4.111 11 H 0.093 0.907 12 C 0.020 3.980 13 N -0.414 5.414 14 C 0.391 3.609 15 O -0.482 6.482 16 N -0.383 5.383 17 C 0.146 3.854 18 C -0.578 4.578 19 H 0.081 0.919 20 C -0.141 4.141 21 N -0.523 5.523 22 Si 0.731 3.269 23 H -0.197 1.197 24 H -0.208 1.208 25 H -0.208 1.208 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.223 0.777 44 H 0.217 0.783 45 H 0.042 0.958 46 H 0.042 0.958 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.009 -18.348 -17.389 25.299 hybrid contribution 1.026 1.272 -0.527 1.717 sum 0.017 -17.076 -17.916 24.750 Atomic orbital electron populations 1.21781 0.96118 1.01306 1.01904 1.21570 0.95653 0.97188 1.01785 1.21865 0.94751 0.96756 1.02811 1.21075 0.95688 0.95017 0.97902 0.90967 1.21569 1.00347 0.98875 0.94295 1.21576 1.01089 0.95452 0.97765 1.21525 1.00655 0.95933 0.97479 1.21629 1.01330 0.98768 0.93676 1.21400 1.00581 0.94925 0.94235 0.90681 1.21163 0.98014 0.82796 0.96010 1.45182 1.52726 1.18498 1.25029 1.16174 0.81420 0.81484 0.81801 1.90867 1.40558 1.72321 1.44449 1.45707 1.49540 1.15401 1.27658 1.18964 0.96377 0.88571 0.81537 1.21273 1.28582 1.00420 1.07565 0.91938 1.24953 0.95294 0.98817 0.95042 1.69996 1.36681 1.35645 1.10002 0.86362 0.79396 0.83085 0.78053 1.19687 1.20834 1.20828 0.93074 0.92599 0.92932 0.92083 0.92179 0.91293 0.91275 0.91810 0.92156 0.91639 0.92488 0.92215 0.92144 0.91433 0.91854 0.92223 0.91823 0.77728 0.78262 0.95801 0.95814 0.92555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 37.16 0.37 -0.81 16 2 C -0.12 -0.96 5.69 -26.73 -0.15 -1.11 16 3 C -0.12 -1.07 3.76 -26.73 -0.10 -1.17 16 4 C -0.08 -0.65 2.19 -90.62 -0.20 -0.85 16 5 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 6 C -0.11 -0.81 5.21 -26.73 -0.14 -0.95 16 7 C -0.12 -0.85 5.65 -26.73 -0.15 -1.01 16 8 C -0.12 -0.90 5.92 -26.73 -0.16 -1.06 16 9 C -0.12 -1.04 4.80 -26.73 -0.13 -1.17 16 10 C -0.09 -0.87 2.00 -90.62 -0.18 -1.05 16 11 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 12 C 0.14 1.92 4.57 -4.04 -0.02 1.90 16 13 N -0.76 -11.58 5.29 -65.23 -0.34 -11.93 16 14 C 0.69 14.75 8.57 -86.92 -0.74 14.00 16 15 O -0.60 -15.58 16.34 5.28 0.09 -15.49 16 16 N -0.73 -16.09 5.55 -66.41 -0.37 -16.46 16 17 C 0.27 7.31 5.43 -5.19 -0.03 7.28 16 18 C -0.54 -14.94 9.28 -34.44 -0.32 -15.26 16 19 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 21 N -0.89 -26.51 13.29 55.43 0.74 -25.78 16 22 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.43 6.57 -51.93 -0.34 0.09 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.70 6.28 -51.93 -0.33 0.37 16 32 H 0.07 0.59 4.83 -51.93 -0.25 0.34 16 33 H 0.06 0.42 6.57 -51.93 -0.34 0.08 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.48 6.32 -51.93 -0.33 0.15 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.64 6.54 -51.93 -0.34 0.30 16 40 H 0.06 0.59 7.18 -51.93 -0.37 0.22 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.06 0.92 6.59 -51.93 -0.34 0.57 16 43 H 0.39 4.82 7.67 -40.82 -0.31 4.51 16 44 H 0.39 7.25 8.34 -40.82 -0.34 6.91 16 45 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 358.40 15.07 5.40 5.40 Total: -1.00 -32.59 358.40 -9.89 -42.48 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -8.33 Total: 5.28 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -2.05 Total: 0.41 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: 0.02 Total: -54.17 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: 0.09 Total: -15.49 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.59 -9.89 -42.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458729310.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.564 kcal (2) G-P(sol) polarization free energy of solvation -32.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds