Wall clock time and date at job start Tue Mar 31 2020 05:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47085 * 2 1 4 4 C 1.52994 * 109.46953 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47368 * 305.00091 * 4 3 2 6 6 C 1.53003 * 109.47350 * 65.00431 * 4 3 2 7 7 C 1.52994 * 109.46945 * 59.99533 * 6 4 3 8 8 C 1.53005 * 109.47099 * 60.00218 * 7 6 4 9 9 C 1.52996 * 109.47324 * 299.99749 * 8 7 6 10 10 C 1.53004 * 109.47134 * 185.00497 * 4 3 2 11 11 H 1.08999 * 109.47217 * 180.02562 * 10 4 3 12 12 C 1.52996 * 109.47336 * 59.99783 * 10 4 3 13 13 N 1.46498 * 109.47059 * 175.00083 * 12 10 4 14 14 C 1.34777 * 119.99828 * 179.72339 * 13 12 10 15 15 O 1.21593 * 119.99949 * 0.28071 * 14 13 12 16 16 N 1.34777 * 120.00128 * 180.27942 * 14 13 12 17 17 C 1.46499 * 120.00065 * 180.02562 * 16 14 13 18 18 C 1.50703 * 109.47138 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00043 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00213 * 179.97438 * 18 17 16 21 21 N 1.31520 * 119.99609 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00201 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47001 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47188 * 120.00103 * 22 20 18 25 25 H 1.48497 * 109.47104 * 240.00206 * 22 20 18 26 26 H 1.08998 * 109.46996 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47575 * 300.00026 * 1 2 3 28 28 H 1.08998 * 109.46960 * 60.00006 * 1 2 3 29 29 H 1.08999 * 109.47156 * 240.00309 * 2 1 3 30 30 H 1.08998 * 109.46960 * 119.99994 * 2 1 3 31 31 H 1.08999 * 109.46871 * 60.00135 * 3 2 1 32 32 H 1.08998 * 109.47216 * 299.99837 * 3 2 1 33 33 H 1.08995 * 109.46731 * 300.00022 * 6 4 3 34 34 H 1.08994 * 109.46929 * 179.97438 * 6 4 3 35 35 H 1.09000 * 109.47864 * 300.00473 * 7 6 4 36 36 H 1.09001 * 109.47328 * 180.02562 * 7 6 4 37 37 H 1.09005 * 109.47165 * 179.97438 * 8 7 6 38 38 H 1.08999 * 109.46900 * 60.00147 * 8 7 6 39 39 H 1.09000 * 109.47017 * 300.00357 * 9 8 7 40 40 H 1.08995 * 109.47011 * 179.97438 * 9 8 7 41 41 H 1.09004 * 109.47066 * 55.00351 * 12 10 4 42 42 H 1.08994 * 109.46974 * 295.00498 * 12 10 4 43 43 H 0.97001 * 120.00384 * 0.02562 * 13 12 10 44 44 H 0.97000 * 119.99549 * 359.97438 * 16 14 13 45 45 H 1.09000 * 109.47602 * 299.99940 * 17 16 14 46 46 H 1.09006 * 109.46868 * 59.99976 * 17 16 14 47 47 H 0.96997 * 119.99506 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9330 0.8532 0.8427 6 6 4.0805 0.8327 -1.3064 7 6 3.5710 1.6600 -2.4883 8 6 4.0809 3.0971 -2.3625 9 6 3.5704 3.7068 -1.0555 10 6 4.0799 2.8795 0.1265 11 1 5.1699 2.8796 0.1265 12 6 3.5694 3.4893 1.4335 13 7 4.1535 4.8209 1.6121 14 6 3.8402 5.5540 2.6987 15 8 3.0767 5.1081 3.5334 16 7 4.3731 6.7813 2.8602 17 6 4.0330 7.5779 4.0417 18 6 4.7561 8.8988 3.9822 19 1 5.4039 9.1227 3.1475 20 6 4.5899 9.8220 4.9927 21 7 3.8006 9.5495 6.0089 22 14 5.4856 11.4595 4.9185 23 1 6.3050 11.5199 3.6816 24 1 4.4949 12.5657 4.9099 25 1 6.3685 11.5949 6.1048 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.7172 -0.1910 -1.3960 34 1 5.1705 0.8332 -1.3061 35 1 2.4810 1.6601 -2.4888 36 1 3.9343 1.2254 -3.4195 37 1 3.7183 3.6863 -3.2048 38 1 5.1709 3.0971 -2.3621 39 1 2.4804 3.7068 -1.0559 40 1 3.9340 4.7304 -0.9657 41 1 3.8574 2.8512 2.2690 42 1 2.4832 3.5710 1.3964 43 1 4.7623 5.1768 0.9460 44 1 4.9825 7.1368 2.1945 45 1 2.9574 7.7529 4.0647 46 1 4.3329 7.0401 4.9412 47 1 3.6834 10.1991 6.7196 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458729310.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:36 Heat of formation + Delta-G solvation = -100.033781 kcal Electronic energy + Delta-G solvation = -22622.280926 eV Core-core repulsion = 19416.109021 eV Total energy + Delta-G solvation = -3206.171905 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.18908 -40.25694 -36.37124 -35.82351 -35.11439 -34.34008 -32.25699 -31.48176 -29.27225 -27.47513 -26.21618 -24.54114 -23.38072 -22.52087 -21.95285 -21.79977 -19.86121 -19.06787 -18.04518 -17.43554 -16.70567 -16.62863 -16.42869 -15.98958 -15.50957 -15.28802 -14.92527 -14.77703 -14.62962 -14.32245 -14.03817 -13.94737 -13.59892 -13.43245 -13.25850 -12.86791 -12.78009 -12.74310 -12.58847 -12.34383 -12.21209 -11.98253 -11.89053 -11.68383 -11.44224 -11.36483 -11.21522 -10.94851 -10.81322 -10.77296 -10.74967 -10.22627 -9.55376 -8.28035 -6.44468 1.43724 1.45468 1.58693 1.93081 2.26202 2.40285 3.06955 3.55755 3.64349 3.76327 3.84332 4.12245 4.15054 4.30782 4.33331 4.43223 4.47796 4.55985 4.59985 4.69176 4.75933 4.81309 4.84790 4.89180 4.97733 5.05685 5.10226 5.13782 5.19197 5.20940 5.27410 5.31492 5.32945 5.35458 5.43425 5.45180 5.49906 5.55541 5.59858 5.61028 5.69951 5.72241 5.85929 6.28686 6.67749 7.25013 7.33507 7.74385 8.84730 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028084 B = 0.002914 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.766324 B = 9607.446853 C =10279.861033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.122 4.122 3 C -0.122 4.122 4 C -0.076 4.076 5 H 0.069 0.931 6 C -0.108 4.108 7 C -0.120 4.120 8 C -0.115 4.115 9 C -0.116 4.116 10 C -0.080 4.080 11 H 0.086 0.914 12 C 0.144 3.856 13 N -0.730 5.730 14 C 0.689 3.311 15 O -0.652 6.652 16 N -0.724 5.724 17 C 0.285 3.715 18 C -0.553 4.553 19 H 0.084 0.916 20 C 0.002 3.998 21 N -0.932 5.932 22 Si 0.987 3.013 23 H -0.253 1.253 24 H -0.279 1.279 25 H -0.279 1.279 26 H 0.059 0.941 27 H 0.042 0.958 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.056 0.944 31 H 0.045 0.955 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.046 0.954 42 H 0.050 0.950 43 H 0.409 0.591 44 H 0.404 0.596 45 H -0.016 1.016 46 H -0.016 1.016 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.555 -17.986 -21.005 27.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C -0.159 4.159 4 C -0.095 4.095 5 H 0.087 0.913 6 C -0.146 4.146 7 C -0.158 4.158 8 C -0.152 4.152 9 C -0.154 4.154 10 C -0.099 4.099 11 H 0.104 0.896 12 C 0.020 3.980 13 N -0.387 5.387 14 C 0.388 3.612 15 O -0.535 6.535 16 N -0.377 5.377 17 C 0.162 3.838 18 C -0.591 4.591 19 H 0.102 0.898 20 C -0.197 4.197 21 N -0.570 5.570 22 Si 0.810 3.190 23 H -0.176 1.176 24 H -0.204 1.204 25 H -0.204 1.204 26 H 0.078 0.922 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.245 0.755 44 H 0.240 0.760 45 H 0.002 0.998 46 H 0.002 0.998 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.795 -18.323 -20.087 27.200 hybrid contribution 0.420 1.167 0.280 1.271 sum 1.215 -17.156 -19.807 26.232 Atomic orbital electron populations 1.21792 0.96207 1.01766 1.01461 1.21550 0.95583 0.96507 1.02249 1.21823 0.95074 0.97252 1.01800 1.21066 0.95363 0.94133 0.98905 0.91266 1.21539 1.00644 0.99208 0.93186 1.21576 1.00961 0.95048 0.98182 1.21498 1.00983 0.96244 0.96476 1.21622 1.00869 0.98594 0.94284 1.21335 1.01029 0.95467 0.92054 0.89588 1.21330 0.97374 0.81375 0.97918 1.44958 1.51997 1.18487 1.23280 1.16373 0.80823 0.81393 0.82590 1.90833 1.42698 1.73301 1.46662 1.45292 1.50159 1.15500 1.26789 1.18403 0.94022 0.89292 0.82102 1.21629 1.28797 1.00260 1.08413 0.89800 1.26090 0.95945 1.03363 0.94319 1.70159 1.38377 1.37446 1.11041 0.85075 0.77998 0.77109 0.78792 1.17608 1.20435 1.20425 0.92168 0.93855 0.92590 0.90721 0.92513 0.93579 0.91009 0.90897 0.91598 0.91900 0.91312 0.91729 0.91516 0.92268 0.92179 0.93521 0.93129 0.75463 0.76034 0.99777 0.99784 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.91 71.98 0.71 -1.58 16 2 C -0.12 -1.75 5.69 30.60 0.17 -1.58 16 3 C -0.12 -2.03 3.76 30.59 0.11 -1.92 16 4 C -0.08 -1.16 2.19 -10.79 -0.02 -1.18 16 5 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 6 C -0.11 -1.26 5.21 30.59 0.16 -1.10 16 7 C -0.12 -1.36 5.65 30.59 0.17 -1.19 16 8 C -0.11 -1.43 5.92 30.59 0.18 -1.25 16 9 C -0.12 -1.88 4.80 30.60 0.15 -1.73 16 10 C -0.08 -1.40 2.00 -10.79 -0.02 -1.42 16 11 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 12 C 0.14 3.83 4.57 86.38 0.39 4.22 16 13 N -0.73 -22.04 5.29 -478.54 -2.53 -24.57 16 14 C 0.69 29.98 8.57 179.05 1.53 31.51 16 15 O -0.65 -35.24 16.34 -4.01 -0.07 -35.30 16 16 N -0.72 -32.27 5.55 -482.28 -2.68 -34.95 16 17 C 0.29 16.25 5.43 85.63 0.46 16.71 16 18 C -0.55 -30.67 9.28 25.60 0.24 -30.43 16 19 H 0.08 4.20 7.60 -2.91 -0.02 4.17 16 20 C 0.00 0.13 5.46 84.65 0.46 0.59 16 21 N -0.93 -57.08 13.29 21.45 0.28 -56.80 16 22 Si 0.99 42.77 29.54 68.60 2.03 44.79 16 23 H -0.25 -10.07 7.11 99.48 0.71 -9.37 16 24 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 25 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 26 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.07 0.89 6.57 -2.39 -0.02 0.87 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.05 0.97 6.28 -2.39 -0.02 0.96 16 32 H 0.07 1.15 4.83 -2.39 -0.01 1.14 16 33 H 0.07 0.75 6.57 -2.39 -0.02 0.74 16 34 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.06 0.76 6.32 -2.39 -0.02 0.75 16 36 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 38 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.06 1.07 6.54 -2.39 -0.02 1.05 16 40 H 0.06 1.01 7.18 -2.39 -0.02 0.99 16 41 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 42 H 0.05 1.51 6.59 -2.39 -0.02 1.49 16 43 H 0.41 9.40 7.67 -92.71 -0.71 8.69 16 44 H 0.40 14.79 8.34 -92.71 -0.77 14.02 16 45 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 46 H -0.02 -1.01 8.14 -2.38 -0.02 -1.03 16 47 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -72.95 358.40 1.22 -71.73 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: -0.53 Total: 25.44 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: 4.71 Total: 9.65 kcal Atomic # 7 Polarization: -111.39 SS G_CDS: -4.92 Total: -116.31 kcal Atomic # 8 Polarization: -35.24 SS G_CDS: -0.07 Total: -35.30 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.79 kcal Total: -72.95 1.22 -71.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458729310.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.301 kcal (2) G-P(sol) polarization free energy of solvation -72.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds