Wall clock time and date at job start Tue Mar 31 2020 06:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.46723 * 2 1 4 4 C 1.52993 * 109.47134 * 120.00282 * 2 1 3 5 5 H 1.09007 * 115.56150 * 274.31318 * 4 2 1 6 6 C 1.52994 * 117.50141 * 128.62237 * 4 2 1 7 7 C 1.52999 * 60.00281 * 252.51187 * 6 4 2 8 8 H 1.08997 * 117.50223 * 107.51038 * 7 6 4 9 9 N 1.46507 * 117.49486 * 252.51196 * 7 6 4 10 10 C 1.34775 * 119.99844 * 223.60266 * 9 7 6 11 11 O 1.21587 * 119.99651 * 0.02562 * 10 9 7 12 12 N 1.34769 * 120.00179 * 179.97438 * 10 9 7 13 13 C 1.46500 * 120.00237 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.46998 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47127 * 299.99786 * 14 13 12 16 16 C 1.52997 * 109.47164 * 59.99949 * 14 13 12 17 17 C 1.52999 * 109.46623 * 179.97438 * 14 13 12 18 18 C 1.50706 * 109.46953 * 179.97438 * 17 14 13 19 19 H 1.07999 * 119.99816 * 0.02562 * 18 17 14 20 20 C 1.37876 * 120.00344 * 180.02562 * 18 17 14 21 21 N 1.31514 * 120.00355 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99771 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.46889 * 89.99924 * 22 20 18 24 24 H 1.48498 * 109.47131 * 210.00227 * 22 20 18 25 25 H 1.48500 * 109.47362 * 330.00383 * 22 20 18 26 26 H 1.08995 * 109.46732 * 299.99735 * 1 2 3 27 27 H 1.08998 * 109.46763 * 59.99758 * 1 2 3 28 28 H 1.08997 * 109.47141 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46732 * 240.00265 * 2 1 3 30 30 H 1.09006 * 109.46514 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47699 * 299.99669 * 3 2 1 32 32 H 1.08995 * 109.47300 * 60.00613 * 3 2 1 33 33 H 1.08997 * 117.50481 * 145.01841 * 6 4 2 34 34 H 1.09003 * 117.51774 * 359.97438 * 6 4 2 35 35 H 0.96996 * 120.00113 * 43.60838 * 9 7 6 36 36 H 0.97010 * 119.99854 * 0.02562 * 12 10 9 37 37 H 1.08993 * 109.47452 * 60.00368 * 13 12 10 38 38 H 1.09000 * 109.47175 * 300.00158 * 13 12 10 39 39 H 1.09001 * 109.46832 * 60.00321 * 15 14 13 40 40 H 1.09002 * 109.47153 * 180.02562 * 15 14 13 41 41 H 1.08996 * 109.46952 * 300.00302 * 15 14 13 42 42 H 1.09000 * 109.47140 * 60.00051 * 16 14 13 43 43 H 1.09001 * 109.47230 * 179.97438 * 16 14 13 44 44 H 1.09001 * 109.47375 * 300.00034 * 16 14 13 45 45 H 1.09000 * 109.47486 * 299.99829 * 17 14 13 46 46 H 1.09001 * 109.47362 * 60.00551 * 17 14 13 47 47 H 0.96991 * 119.99886 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 2.1271 -0.1062 2.1449 6 6 3.0742 -1.8313 1.0513 7 6 1.6358 -2.1853 1.4341 8 1 1.0066 -2.6349 0.6660 9 7 1.3954 -2.6531 2.8015 10 6 0.5846 -3.7072 3.0204 11 8 0.0531 -4.2702 2.0829 12 7 0.3638 -4.1379 4.2781 13 6 -0.5170 -5.2841 4.5160 14 6 -0.5962 -5.5633 6.0183 15 6 0.8027 -5.8755 6.5534 16 6 -1.1544 -4.3334 6.7369 17 6 -1.5166 -6.7600 6.2666 18 6 -1.5942 -7.0355 7.7462 19 1 -1.0425 -6.4185 8.4400 20 6 -2.3694 -8.0752 8.2142 21 7 -2.4375 -8.3153 9.5055 22 14 -3.3241 -9.1420 7.0142 23 1 -2.4806 -10.2890 6.5923 24 1 -4.5548 -9.6485 7.6731 25 1 -3.6959 -8.3366 5.8233 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.8416 -1.9466 1.8166 34 1 3.3911 -2.0483 0.0312 35 1 1.8196 -2.2040 3.5494 36 1 0.7882 -3.6889 5.0261 37 1 -0.1196 -6.1602 4.0037 38 1 -1.5137 -5.0616 4.1351 39 1 1.4581 -5.0227 6.3765 40 1 0.7462 -6.0749 7.6236 41 1 1.2004 -6.7517 6.0414 42 1 -2.1511 -4.1110 6.3556 43 1 -1.2113 -4.5325 7.8071 44 1 -0.4991 -3.4806 6.5599 45 1 -2.5132 -6.5372 5.8854 46 1 -1.1193 -7.6365 5.7546 47 1 -2.9831 -9.0465 9.8346 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458769053.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:28 Heat of formation + Delta-G solvation = -55.911566 kcal Electronic energy + Delta-G solvation = -22362.167466 eV Core-core repulsion = 19157.908843 eV Total energy + Delta-G solvation = -3204.258623 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.23040 -39.47710 -38.52152 -35.34578 -35.16606 -34.02891 -32.66100 -29.68708 -27.99861 -27.97836 -27.51239 -24.62027 -23.83556 -22.94282 -21.85075 -20.85337 -20.05121 -18.97409 -18.84478 -17.61395 -16.55557 -16.38686 -16.04099 -15.81467 -15.44125 -15.30348 -15.00324 -14.95510 -14.20468 -14.15155 -14.03456 -13.92213 -13.68149 -13.41942 -13.02443 -12.93687 -12.83858 -12.62260 -12.29770 -12.23491 -12.15290 -12.12818 -11.82474 -11.77133 -11.59549 -11.50784 -11.40973 -11.16556 -10.93365 -10.88290 -10.70000 -10.17737 -9.47879 -8.22014 -6.21892 1.36191 1.39058 1.49195 1.66083 2.09080 2.39516 2.97175 3.13471 3.25353 3.77116 3.82531 3.93260 4.02750 4.07741 4.16644 4.17386 4.42394 4.46209 4.64175 4.68727 4.73211 4.74726 4.84755 4.86662 4.96347 4.96931 5.00810 5.04423 5.08680 5.10343 5.23242 5.30000 5.30703 5.37611 5.41565 5.44705 5.50416 5.51962 5.57463 5.61844 5.70520 5.76986 6.02761 6.38652 6.84812 7.10735 7.40831 7.59428 8.93498 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.036341 B = 0.002792 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.303547 B =10027.556256 C =10204.594554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.065 4.065 3 C -0.140 4.140 4 C -0.138 4.138 5 H 0.117 0.883 6 C -0.178 4.178 7 C 0.081 3.919 8 H 0.111 0.889 9 N -0.704 5.704 10 C 0.701 3.299 11 O -0.639 6.639 12 N -0.725 5.725 13 C 0.159 3.841 14 C -0.056 4.056 15 C -0.123 4.123 16 C -0.123 4.123 17 C -0.005 4.005 18 C -0.500 4.500 19 H 0.053 0.947 20 C 0.005 3.995 21 N -0.951 5.951 22 Si 0.933 3.067 23 H -0.272 1.272 24 H -0.289 1.289 25 H -0.252 1.252 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.039 0.961 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.412 0.588 36 H 0.409 0.591 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.068 0.932 40 H 0.045 0.955 41 H 0.044 0.956 42 H 0.043 0.957 43 H 0.045 0.955 44 H 0.068 0.932 45 H 0.015 0.985 46 H 0.013 0.987 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.948 19.500 -17.494 28.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.084 4.084 3 C -0.198 4.198 4 C -0.158 4.158 5 H 0.135 0.865 6 C -0.216 4.216 7 C -0.025 4.025 8 H 0.129 0.871 9 N -0.358 5.358 10 C 0.401 3.599 11 O -0.520 6.520 12 N -0.381 5.381 13 C 0.034 3.966 14 C -0.057 4.057 15 C -0.180 4.180 16 C -0.180 4.180 17 C -0.043 4.043 18 C -0.538 4.538 19 H 0.071 0.929 20 C -0.191 4.191 21 N -0.593 5.593 22 Si 0.758 3.242 23 H -0.197 1.197 24 H -0.215 1.215 25 H -0.176 1.176 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.058 0.942 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.248 0.752 36 H 0.247 0.753 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.087 0.913 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.065 0.935 44 H 0.087 0.913 45 H 0.033 0.967 46 H 0.032 0.968 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.371 18.864 -18.194 28.569 hybrid contribution -0.451 -0.728 0.753 1.140 sum 10.920 18.136 -17.441 27.429 Atomic orbital electron populations 1.21816 0.95516 1.01123 1.01948 1.20725 0.95183 0.96754 0.95721 1.21773 1.01366 0.94496 1.02122 1.22973 1.02056 0.90031 1.00693 0.86506 1.23696 0.92325 1.01746 1.03859 1.21466 0.99159 0.97691 0.84204 0.87096 1.44285 1.50299 1.32457 1.08740 1.16069 0.79719 0.80712 0.83358 1.90879 1.56600 1.61119 1.43432 1.45009 1.51891 1.34922 1.06277 1.21119 0.92841 0.87195 0.95459 1.20546 0.96743 0.96371 0.92033 1.21697 0.94626 1.00742 1.00962 1.21693 1.00045 0.95933 1.00326 1.19579 0.95149 0.94187 0.95345 1.21359 1.26819 1.13573 0.92071 0.92869 1.25827 0.97907 0.99040 0.96342 1.70035 1.42487 1.32135 1.14612 0.85908 0.78483 0.79649 0.80111 1.19734 1.21475 1.17598 0.92850 0.91913 0.94164 0.90851 0.91960 0.92160 0.92520 0.87471 0.87439 0.75170 0.75335 0.93001 0.93099 0.91285 0.93554 0.93731 0.93792 0.93546 0.91293 0.96709 0.96850 0.92875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.03 71.99 0.65 -1.48 16 2 C -0.07 -0.78 3.07 -10.79 -0.03 -0.81 16 3 C -0.14 -1.30 9.18 71.98 0.66 -0.64 16 4 C -0.14 -1.74 5.07 -10.80 -0.05 -1.79 16 5 H 0.12 1.24 8.11 -2.38 -0.02 1.22 16 6 C -0.18 -2.28 10.10 30.59 0.31 -1.97 16 7 C 0.08 1.51 5.64 44.99 0.25 1.77 16 8 H 0.11 2.69 6.86 -2.39 -0.02 2.68 16 9 N -0.70 -13.85 5.57 -457.81 -2.55 -16.40 16 10 C 0.70 19.98 8.57 179.06 1.53 21.52 16 11 O -0.64 -24.31 15.91 -3.99 -0.06 -24.37 16 12 N -0.72 -18.82 4.96 -478.54 -2.37 -21.19 16 13 C 0.16 5.18 4.56 86.38 0.39 5.57 16 14 C -0.06 -2.00 0.54 -52.18 -0.03 -2.03 16 15 C -0.12 -4.06 8.05 71.98 0.58 -3.48 16 16 C -0.12 -4.06 8.05 71.98 0.58 -3.48 16 17 C 0.00 -0.21 3.11 29.85 0.09 -0.12 16 18 C -0.50 -27.15 8.20 25.60 0.21 -26.94 16 19 H 0.05 3.10 5.92 -2.91 -0.02 3.08 16 20 C 0.01 0.29 5.47 84.65 0.46 0.75 16 21 N -0.95 -58.71 13.96 21.45 0.30 -58.41 16 22 Si 0.93 44.67 27.47 68.60 1.88 46.56 16 23 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 24 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 25 H -0.25 -11.43 6.54 99.48 0.65 -10.78 16 26 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.04 0.73 7.29 -2.39 -0.02 0.72 16 29 H 0.07 0.87 7.90 -2.39 -0.02 0.85 16 30 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.11 1.25 8.05 -2.39 -0.02 1.23 16 35 H 0.41 5.35 8.84 -92.71 -0.82 4.54 16 36 H 0.41 8.17 6.18 -92.70 -0.57 7.60 16 37 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.07 1.73 6.86 -2.39 -0.02 1.71 16 40 H 0.05 1.78 6.62 -2.39 -0.02 1.76 16 41 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.05 1.78 6.62 -2.39 -0.02 1.77 16 44 H 0.07 1.73 6.86 -2.39 -0.02 1.71 16 45 H 0.01 0.68 7.20 -2.39 -0.02 0.66 16 46 H 0.01 0.60 7.57 -2.39 -0.02 0.58 16 47 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -69.70 367.87 2.30 -67.40 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: -0.50 Total: 19.56 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: 5.61 Total: -13.13 kcal Atomic # 7 Polarization: -91.38 SS G_CDS: -4.63 Total: -96.01 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.06 Total: -24.37 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.88 Total: 46.56 kcal Total: -69.70 2.30 -67.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458769053.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.489 kcal (2) G-P(sol) polarization free energy of solvation -69.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds