Wall clock time and date at job start Tue Mar 31 2020 06:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47001 * 2 1 4 4 C 1.53001 * 109.46835 * 119.99543 * 2 1 3 5 5 H 1.08998 * 115.54977 * 274.33086 * 4 2 1 6 6 C 1.53000 * 117.49468 * 128.62484 * 4 2 1 7 7 C 1.52997 * 117.49454 * 60.00435 * 4 2 1 8 8 H 1.08996 * 117.50451 * 359.97326 * 7 4 2 9 9 C 1.53004 * 117.49584 * 214.97296 * 7 4 2 10 10 N 1.46504 * 109.46928 * 174.99984 * 9 7 4 11 11 C 1.34777 * 119.99854 * 179.97438 * 10 9 7 12 12 O 1.21593 * 119.99953 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00097 * 180.27545 * 11 10 9 14 14 C 1.46500 * 120.00431 * 179.72742 * 13 11 10 15 15 C 1.52999 * 109.47528 * 180.02562 * 14 13 11 16 16 C 1.53001 * 109.46443 * 299.99804 * 15 14 13 17 17 C 1.52995 * 109.47352 * 59.99668 * 15 14 13 18 18 C 1.50698 * 109.47004 * 180.02562 * 15 14 13 19 19 H 1.08001 * 120.00495 * 359.97438 * 18 15 14 20 20 C 1.37880 * 119.99756 * 179.97438 * 18 15 14 21 21 N 1.31514 * 119.99843 * 0.02562 * 20 18 15 22 22 Si 1.86801 * 119.99948 * 179.97438 * 20 18 15 23 23 H 1.48494 * 109.47230 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46780 * 120.00270 * 22 20 18 25 25 H 1.48501 * 109.47039 * 240.00381 * 22 20 18 26 26 H 1.08999 * 109.47515 * 300.00061 * 1 2 3 27 27 H 1.09005 * 109.47203 * 60.00070 * 1 2 3 28 28 H 1.08996 * 109.46989 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47068 * 240.00110 * 2 1 3 30 30 H 1.08996 * 109.46786 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.46716 * 300.00140 * 3 2 1 32 32 H 1.08999 * 109.47036 * 59.99645 * 3 2 1 33 33 H 1.09003 * 117.49961 * 145.02271 * 6 4 2 34 34 H 1.09003 * 117.50013 * 359.97438 * 6 4 2 35 35 H 1.08998 * 109.47202 * 55.00243 * 9 7 4 36 36 H 1.08997 * 109.47419 * 295.00141 * 9 7 4 37 37 H 0.97000 * 120.00410 * 0.02562 * 10 9 7 38 38 H 0.97000 * 120.00112 * 359.73180 * 13 11 10 39 39 H 1.09009 * 109.46712 * 300.00517 * 14 13 11 40 40 H 1.08998 * 109.47207 * 59.99494 * 14 13 11 41 41 H 1.08995 * 109.47475 * 60.00483 * 16 15 14 42 42 H 1.09008 * 109.46867 * 180.02562 * 16 15 14 43 43 H 1.09001 * 109.47371 * 299.99516 * 16 15 14 44 44 H 1.08995 * 109.47107 * 60.00613 * 17 15 14 45 45 H 1.09001 * 109.46983 * 180.02562 * 17 15 14 46 46 H 1.09003 * 109.47199 * 300.00234 * 17 15 14 47 47 H 0.97004 * 119.99483 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 2.1266 -0.1059 2.1448 6 6 3.0741 -1.8312 1.0515 7 6 1.6356 -2.1851 1.4343 8 1 1.0061 -2.6343 0.6663 9 6 1.3846 -2.6736 2.8624 10 7 0.8961 -4.0543 2.8274 11 6 0.6063 -4.6959 3.9767 12 8 0.7499 -4.1286 5.0425 13 7 0.1622 -5.9680 3.9448 14 6 -0.1471 -6.6675 5.1943 15 6 -0.6272 -8.0857 4.8796 16 6 -1.8835 -8.0172 4.0090 17 6 0.4719 -8.8418 4.1306 18 6 -0.9459 -8.8049 6.1650 19 1 -0.8184 -8.3010 7.1117 20 6 -1.4003 -10.1062 6.1324 21 7 -1.5551 -10.7200 4.9796 22 14 -1.7948 -10.9980 7.7257 23 1 -1.5378 -10.0942 8.8755 24 1 -3.2233 -11.4038 7.7252 25 1 -0.9374 -12.2048 7.8428 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 3.8415 -1.9464 1.8170 34 1 3.3908 -2.0480 0.0313 35 1 0.6393 -2.0365 3.3385 36 1 2.3143 -2.6314 3.4296 37 1 0.7819 -4.5070 1.9771 38 1 0.0474 -6.4205 3.0945 39 1 0.7481 -6.7164 5.8145 40 1 -0.9298 -6.1286 5.7282 41 1 -1.6534 -7.4969 3.0793 42 1 -2.2258 -9.0277 3.7851 43 1 -2.6665 -7.4787 4.5427 44 1 1.3668 -8.8905 4.7508 45 1 0.1296 -9.8520 3.9060 46 1 0.7020 -8.3214 3.2008 47 1 -1.8745 -11.6356 4.9567 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459058722.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:02 Heat of formation + Delta-G solvation = -33.915524 kcal Electronic energy + Delta-G solvation = -22207.700868 eV Core-core repulsion = 19004.396065 eV Total energy + Delta-G solvation = -3203.304803 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.68758 -38.71334 -36.44850 -34.73054 -33.32102 -32.95928 -30.75415 -27.52693 -27.07537 -25.69306 -25.42116 -24.37880 -23.18435 -21.14469 -20.70927 -19.93862 -18.73718 -17.97296 -16.20792 -15.79706 -15.35001 -15.25278 -14.93031 -14.68227 -14.13259 -13.74501 -13.71535 -13.46735 -13.35607 -12.88877 -12.82372 -12.52152 -12.37102 -12.14700 -11.61349 -11.57728 -11.40789 -11.35141 -11.17710 -10.95254 -10.85653 -10.63603 -10.36310 -10.26220 -10.19784 -10.16097 -9.70082 -9.59878 -9.27221 -8.89247 -8.75208 -8.39066 -8.13424 -5.99927 -4.09492 3.07451 3.28848 3.37359 3.42577 3.52412 3.71111 4.23985 4.41115 4.51890 4.57017 4.72328 4.86105 4.95806 5.00379 5.12620 5.26939 5.29100 5.35781 5.48728 5.56105 5.59743 5.62819 5.74535 5.75861 5.87011 5.96543 6.01662 6.12294 6.25544 6.40589 6.54228 6.71645 6.83919 6.86142 6.94878 7.06585 7.14567 7.35329 7.46460 7.58996 7.72610 8.04176 8.15624 8.41372 8.54081 8.90807 9.10222 9.56126 11.01557 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.043529 B = 0.002567 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.096081 B =10904.771942 C =11014.612449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.066 4.066 3 C -0.145 4.145 4 C -0.136 4.136 5 H 0.107 0.893 6 C -0.172 4.172 7 C -0.161 4.161 8 H 0.109 0.891 9 C 0.173 3.827 10 N -0.752 5.752 11 C 0.697 3.303 12 O -0.602 6.602 13 N -0.733 5.733 14 C 0.151 3.849 15 C 0.055 3.945 16 C -0.130 4.130 17 C -0.130 4.130 18 C -0.503 4.503 19 H 0.058 0.942 20 C 0.065 3.935 21 N -0.886 5.886 22 Si 0.893 3.107 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.285 1.285 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.393 0.607 38 H 0.393 0.607 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.006 0.994 42 H 0.085 0.915 43 H 0.026 0.974 44 H 0.026 0.974 45 H 0.085 0.915 46 H 0.006 0.994 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.004 17.633 -12.877 22.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.085 4.085 3 C -0.202 4.202 4 C -0.155 4.155 5 H 0.125 0.875 6 C -0.209 4.209 7 C -0.180 4.180 8 H 0.127 0.873 9 C 0.048 3.952 10 N -0.409 5.409 11 C 0.397 3.603 12 O -0.481 6.481 13 N -0.388 5.388 14 C 0.027 3.973 15 C 0.054 3.946 16 C -0.188 4.188 17 C -0.187 4.187 18 C -0.542 4.542 19 H 0.076 0.924 20 C -0.136 4.136 21 N -0.525 5.525 22 Si 0.721 3.279 23 H -0.197 1.197 24 H -0.211 1.211 25 H -0.211 1.211 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.227 0.773 38 H 0.228 0.772 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.025 0.975 42 H 0.103 0.897 43 H 0.045 0.955 44 H 0.045 0.955 45 H 0.103 0.897 46 H 0.025 0.975 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.067 17.963 -11.912 22.392 hybrid contribution -0.317 -0.987 0.014 1.037 sum 5.750 16.976 -11.898 21.513 Atomic orbital electron populations 1.21828 0.94835 1.02056 1.01687 1.20712 0.95799 0.95940 0.96005 1.21808 1.01053 0.95574 1.01764 1.22473 1.02966 0.90192 0.99876 0.87535 1.23240 0.92191 1.02726 1.02718 1.22544 0.98873 0.98653 0.97896 0.87265 1.20604 0.99321 0.81632 0.93617 1.45092 1.73075 1.14969 1.07741 1.16073 0.78494 0.81905 0.83861 1.90880 1.60759 1.67518 1.28926 1.45496 1.69977 1.11814 1.11482 1.21572 0.99049 0.93623 0.83007 1.18371 0.92335 0.88301 0.95553 1.21819 0.98555 1.02563 0.95814 1.21815 0.97730 1.03241 0.95953 1.21032 1.43793 0.97529 0.91813 0.92354 1.24889 0.95248 0.97316 0.96178 1.69820 1.46637 1.12261 1.23814 0.86514 0.77867 0.79622 0.83875 1.19746 1.21099 1.21096 0.92478 0.92850 0.92470 0.91260 0.92607 0.92721 0.92563 0.88557 0.88760 0.91607 0.91833 0.77333 0.77232 0.93014 0.93003 0.97545 0.89663 0.95462 0.95459 0.89672 0.97541 0.93116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.03 37.16 0.34 -0.69 16 2 C -0.07 -0.45 3.07 -90.62 -0.28 -0.73 16 3 C -0.14 -0.88 9.18 37.16 0.34 -0.54 16 4 C -0.14 -1.05 4.87 -90.62 -0.44 -1.49 16 5 H 0.11 0.84 8.11 -51.93 -0.42 0.42 16 6 C -0.17 -1.34 9.82 -26.73 -0.26 -1.60 16 7 C -0.16 -1.39 5.05 -90.62 -0.46 -1.85 16 8 H 0.11 0.88 7.50 -51.93 -0.39 0.49 16 9 C 0.17 2.05 5.96 -4.04 -0.02 2.02 16 10 N -0.75 -10.13 5.56 -65.22 -0.36 -10.50 16 11 C 0.70 12.81 8.57 -86.92 -0.74 12.07 16 12 O -0.60 -13.51 16.34 5.28 0.09 -13.43 16 13 N -0.73 -13.52 4.96 -65.22 -0.32 -13.84 16 14 C 0.15 3.30 4.50 -4.04 -0.02 3.28 16 15 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 16 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 17 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 18 C -0.50 -13.32 8.01 -34.44 -0.28 -13.59 16 19 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 20 C 0.06 1.71 5.15 -17.82 -0.09 1.62 16 21 N -0.89 -23.76 9.35 55.43 0.52 -23.24 16 22 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 23 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.42 7.29 -51.93 -0.38 0.04 16 29 H 0.07 0.46 7.90 -51.93 -0.41 0.05 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.10 0.77 8.03 -51.93 -0.42 0.36 16 34 H 0.09 0.66 8.05 -51.93 -0.42 0.24 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.82 7.87 -51.93 -0.41 0.41 16 37 H 0.39 4.24 8.42 -40.82 -0.34 3.89 16 38 H 0.39 6.47 6.18 -40.82 -0.25 6.21 16 39 H 0.05 1.20 8.14 -51.92 -0.42 0.78 16 40 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 42 H 0.08 2.14 6.07 -51.92 -0.32 1.82 16 43 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.08 2.14 6.07 -51.93 -0.32 1.82 16 46 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 47 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 LS Contribution 369.63 15.07 5.57 5.57 Total: -1.00 -29.41 369.63 -9.48 -38.89 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -8.55 Total: 6.25 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -1.40 Total: -5.57 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: -0.17 Total: -47.58 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: 0.09 Total: -13.43 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.41 -9.48 -38.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459058722.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.972 kcal (2) G-P(sol) polarization free energy of solvation -29.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds