Wall clock time and date at job start Tue Mar 31 2020 05:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46372 * 2 1 4 4 C 1.52996 * 109.47063 * 119.99814 * 2 1 3 5 5 C 1.53001 * 109.47244 * 65.00488 * 4 2 1 6 6 H 1.08999 * 115.56029 * 29.30573 * 5 4 2 7 7 C 1.53000 * 117.49649 * 243.62178 * 5 4 2 8 8 C 1.52998 * 117.49839 * 174.99747 * 5 4 2 9 9 H 1.09000 * 117.51944 * 0.02562 * 8 5 4 10 10 N 1.46495 * 117.50093 * 214.97843 * 8 5 4 11 11 C 1.34779 * 120.00205 * 154.98594 * 10 8 5 12 12 O 1.21581 * 119.99991 * 359.97438 * 11 10 8 13 13 N 1.34773 * 119.99667 * 179.97438 * 11 10 8 14 14 C 1.46502 * 119.99809 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47315 * 180.02562 * 14 13 11 16 16 C 1.53003 * 109.47038 * 60.00249 * 15 14 13 17 17 C 1.52999 * 109.47226 * 300.00518 * 15 14 13 18 18 C 1.50692 * 109.47277 * 180.02562 * 15 14 13 19 19 H 1.08010 * 119.99934 * 4.91713 * 18 15 14 20 20 C 1.37880 * 120.00517 * 184.92084 * 18 15 14 21 21 N 1.31514 * 119.99140 * 351.63402 * 20 18 15 22 22 Si 1.86792 * 120.00291 * 171.63249 * 20 18 15 23 23 H 1.48497 * 109.47377 * 60.00224 * 22 20 18 24 24 H 1.48502 * 109.47297 * 299.99761 * 22 20 18 25 25 H 1.48508 * 109.47057 * 180.02562 * 22 20 18 26 26 H 1.08998 * 109.47390 * 60.00659 * 1 2 3 27 27 H 1.09004 * 109.46546 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47207 * 299.99949 * 1 2 3 29 29 H 1.09001 * 109.47207 * 240.00051 * 2 1 3 30 30 H 1.09012 * 109.46582 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47321 * 299.99509 * 3 2 1 32 32 H 1.09001 * 109.47413 * 60.00178 * 3 2 1 33 33 H 1.09001 * 109.47146 * 304.99720 * 4 2 1 34 34 H 1.09003 * 109.47121 * 185.00381 * 4 2 1 35 35 H 1.08994 * 117.50018 * 145.02602 * 7 5 4 36 36 H 1.09003 * 117.50129 * 359.97438 * 7 5 4 37 37 H 0.97001 * 119.99487 * 334.98719 * 10 8 5 38 38 H 0.97000 * 120.00610 * 0.02562 * 13 11 10 39 39 H 1.09001 * 109.46692 * 60.00630 * 14 13 11 40 40 H 1.09000 * 109.47422 * 300.00842 * 14 13 11 41 41 H 1.08994 * 109.46965 * 172.91870 * 16 15 14 42 42 H 1.08995 * 109.47032 * 292.92255 * 16 15 14 43 43 H 1.09002 * 109.46507 * 52.92038 * 16 15 14 44 44 H 1.09002 * 109.47064 * 307.35876 * 17 15 14 45 45 H 1.09003 * 109.47312 * 67.35679 * 17 15 14 46 46 H 1.08994 * 109.47237 * 187.35834 * 17 15 14 47 47 H 0.96994 * 120.00720 * 5.71946 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6353 -2.1954 1.1880 6 1 1.5389 -2.6154 0.1868 7 6 0.6791 -2.7109 2.2654 8 6 2.1540 -3.1169 2.2937 9 1 2.7833 -2.6731 3.0653 10 7 2.4831 -4.4962 1.9259 11 6 3.3778 -5.1928 2.6545 12 8 3.9122 -4.6763 3.6167 13 7 3.6801 -6.4619 2.3163 14 6 4.6531 -7.2190 3.1078 15 6 4.8128 -8.6205 2.5152 16 6 5.3057 -8.5103 1.0709 17 6 3.4636 -9.3415 2.5400 18 6 5.8131 -9.3993 3.3297 19 1 6.2280 -8.9700 4.2298 20 6 6.1989 -10.6600 2.9261 21 7 5.5775 -11.2497 1.9282 22 14 7.6039 -11.5303 3.7965 23 1 7.2667 -11.7011 5.2326 24 1 8.8417 -10.7194 3.6717 25 1 7.8209 -12.8624 3.1768 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4426 -0.0005 31 1 1.6765 1.9563 -0.8900 32 1 1.6765 1.9564 0.8900 33 1 1.6054 -0.2616 2.1370 34 1 3.1263 -0.6442 1.2952 35 1 -0.0463 -3.4701 1.9731 36 1 0.3386 -1.9998 3.0182 37 1 2.0570 -4.9082 1.1580 38 1 3.2541 -6.8739 1.5484 39 1 4.3021 -7.2971 4.1368 40 1 5.6144 -6.7055 3.0899 41 1 5.5394 -9.5044 0.6900 42 1 4.5279 -8.0587 0.4551 43 1 6.2008 -7.8892 1.0389 44 1 3.0507 -9.3053 3.5481 45 1 2.7774 -8.8523 1.8486 46 1 3.6014 -10.3805 2.2409 47 1 4.9048 -10.7672 1.4228 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459230258.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:29 Heat of formation + Delta-G solvation = -29.326005 kcal Electronic energy + Delta-G solvation = -22293.408426 eV Core-core repulsion = 19090.302640 eV Total energy + Delta-G solvation = -3203.105786 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.87279 -38.37390 -36.82814 -35.61372 -33.56842 -32.51669 -30.32424 -27.55015 -27.44234 -26.05001 -25.92582 -24.40147 -22.14467 -21.17996 -20.77425 -20.17606 -18.89614 -18.33931 -16.62185 -16.42832 -15.42705 -15.04335 -14.83087 -14.57683 -14.03803 -13.94417 -13.73243 -13.45997 -13.14518 -12.87577 -12.65500 -12.56777 -12.45117 -12.17144 -11.84666 -11.63986 -11.50325 -11.28614 -11.19194 -11.01442 -10.93297 -10.77502 -10.62188 -10.61259 -10.15559 -10.08740 -9.88456 -9.85279 -9.51130 -8.77254 -8.55152 -8.27435 -8.19240 -6.26414 -4.10347 2.92188 3.36633 3.44401 3.45894 3.64051 3.87343 4.33978 4.49701 4.57992 4.59803 4.68750 4.77597 4.86784 4.96548 5.22426 5.32198 5.34081 5.41847 5.43258 5.52850 5.60799 5.65029 5.76395 5.81139 5.88577 5.99521 6.00725 6.02785 6.12871 6.20042 6.25927 6.56515 6.61221 6.63213 6.70301 6.80976 6.93290 7.07257 7.10371 7.28523 7.50379 7.66614 8.19400 8.37246 8.40788 8.83957 8.95683 9.59914 10.99633 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.040181 B = 0.002611 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.682442 B =10721.638539 C =10778.070203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 C -0.149 4.149 4 C -0.084 4.084 5 C -0.159 4.159 6 H 0.104 0.896 7 C -0.193 4.193 8 C 0.111 3.889 9 H 0.136 0.864 10 N -0.724 5.724 11 C 0.701 3.299 12 O -0.596 6.596 13 N -0.735 5.735 14 C 0.158 3.842 15 C 0.041 3.959 16 C -0.145 4.145 17 C -0.143 4.143 18 C -0.586 4.586 19 H 0.052 0.948 20 C 0.026 3.974 21 N -0.917 5.917 22 Si 1.065 2.935 23 H -0.288 1.288 24 H -0.288 1.288 25 H -0.283 1.283 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.394 0.606 38 H 0.392 0.608 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.072 0.928 42 H 0.015 0.985 43 H 0.037 0.963 44 H 0.036 0.964 45 H 0.014 0.986 46 H 0.070 0.930 47 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.576 19.155 -5.542 22.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.206 4.206 4 C -0.121 4.121 5 C -0.179 4.179 6 H 0.122 0.878 7 C -0.232 4.232 8 C 0.003 3.997 9 H 0.154 0.846 10 N -0.378 5.378 11 C 0.401 3.599 12 O -0.475 6.475 13 N -0.389 5.389 14 C 0.035 3.965 15 C 0.041 3.959 16 C -0.203 4.203 17 C -0.201 4.201 18 C -0.624 4.624 19 H 0.071 0.929 20 C -0.178 4.178 21 N -0.557 5.557 22 Si 0.894 3.106 23 H -0.215 1.215 24 H -0.214 1.214 25 H -0.209 1.209 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.112 0.888 36 H 0.118 0.882 37 H 0.228 0.772 38 H 0.226 0.774 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.091 0.909 42 H 0.034 0.966 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.033 0.967 46 H 0.089 0.911 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.196 18.139 -4.563 20.843 hybrid contribution -1.377 1.067 -0.841 1.935 sum -10.574 19.206 -5.404 22.581 Atomic orbital electron populations 1.21840 0.95188 1.01943 1.01321 1.21111 0.95983 0.95954 0.98228 1.21853 1.01048 0.96065 1.01647 1.21241 1.00940 0.91926 0.98004 1.22868 1.04153 0.95456 0.95434 0.87772 1.23639 0.94067 1.03694 1.01806 1.21469 0.95915 0.82021 1.00268 0.84642 1.44517 1.46474 1.13386 1.33384 1.16002 0.79682 0.81576 0.82606 1.90879 1.56691 1.70088 1.29853 1.45496 1.47214 1.11955 1.34197 1.21478 0.89530 0.91823 0.93639 1.18531 0.94074 0.89984 0.93357 1.22035 0.98411 1.02175 0.97684 1.22078 0.96775 1.02499 0.98784 1.21742 1.26020 1.03699 1.10952 0.92933 1.25675 0.99959 0.94803 0.97380 1.70875 1.25192 1.38796 1.20839 0.83599 0.75485 0.76125 0.75438 1.21490 1.21428 1.20885 0.93166 0.92349 0.92845 0.91270 0.92663 0.92814 0.92721 0.91560 0.91356 0.88796 0.88237 0.77249 0.77351 0.92759 0.92671 0.90913 0.96562 0.94397 0.94485 0.96709 0.91102 0.90359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.01 37.16 0.33 -0.62 16 2 C -0.09 -0.66 2.88 -90.62 -0.26 -0.92 16 3 C -0.15 -0.96 9.19 37.16 0.34 -0.62 16 4 C -0.08 -0.66 4.96 -26.73 -0.13 -0.80 16 5 C -0.16 -1.40 4.65 -90.62 -0.42 -1.82 16 6 H 0.10 0.87 8.07 -51.93 -0.42 0.45 16 7 C -0.19 -1.75 10.10 -26.73 -0.27 -2.02 16 8 C 0.11 1.30 6.15 -67.93 -0.42 0.88 16 9 H 0.14 1.86 7.40 -51.93 -0.38 1.47 16 10 N -0.72 -9.61 5.57 -58.68 -0.33 -9.94 16 11 C 0.70 12.61 8.57 -86.92 -0.74 11.86 16 12 O -0.60 -13.10 15.91 5.29 0.08 -13.01 16 13 N -0.73 -13.19 5.04 -65.22 -0.33 -13.52 16 14 C 0.16 3.43 4.50 -4.04 -0.02 3.41 16 15 C 0.04 0.96 0.50 -155.66 -0.08 0.88 16 16 C -0.15 -3.22 7.85 37.16 0.29 -2.93 16 17 C -0.14 -3.19 7.91 37.16 0.29 -2.89 16 18 C -0.59 -15.69 8.00 -34.44 -0.28 -15.96 16 19 H 0.05 1.43 7.76 -52.48 -0.41 1.02 16 20 C 0.03 0.70 5.07 -17.82 -0.09 0.61 16 21 N -0.92 -25.84 12.17 55.43 0.67 -25.17 16 22 Si 1.07 24.53 29.91 -169.99 -5.08 19.45 16 23 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 24 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.40 7.38 -51.93 -0.38 0.01 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.36 8.14 -51.92 -0.42 -0.06 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.51 7.88 -51.93 -0.41 0.10 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.10 0.83 8.03 -51.93 -0.42 0.41 16 37 H 0.39 4.16 8.84 -40.82 -0.36 3.80 16 38 H 0.39 6.21 6.30 -40.82 -0.26 5.96 16 39 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.07 1.78 5.16 -51.93 -0.27 1.51 16 42 H 0.02 0.30 7.04 -51.93 -0.37 -0.07 16 43 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.01 0.27 7.05 -51.93 -0.37 -0.10 16 46 H 0.07 1.74 5.30 -51.93 -0.28 1.46 16 47 H 0.28 7.63 3.59 -40.82 -0.15 7.48 16 LS Contribution 366.78 15.07 5.53 5.53 Total: -1.00 -30.38 366.78 -9.23 -39.61 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -8.33 Total: 8.00 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -1.45 Total: -10.93 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: 0.02 Total: -48.63 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.08 Total: -13.01 kcal Atomic # 14 Polarization: 24.53 SS G_CDS: -5.08 Total: 19.45 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.38 -9.23 -39.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459230258.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.281 kcal (2) G-P(sol) polarization free energy of solvation -30.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds