Wall clock time and date at job start Tue Mar 31 2020 06:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46940 * 2 1 4 4 C 1.53004 * 109.47184 * 120.00026 * 2 1 3 5 5 H 1.08992 * 109.99483 * 179.52076 * 4 2 1 6 6 C 1.54311 * 109.77156 * 300.67812 * 4 2 1 7 7 C 1.55160 * 102.86075 * 141.88852 * 6 4 2 8 8 C 1.54904 * 101.58117 * 324.29842 * 7 6 4 9 9 N 1.47018 * 109.88093 * 58.42745 * 4 2 1 10 10 C 1.34773 * 125.65123 * 61.67838 * 9 4 2 11 11 O 1.21590 * 120.00036 * 354.78896 * 10 9 4 12 12 N 1.34770 * 120.00467 * 174.79088 * 10 9 4 13 13 C 1.46497 * 120.00315 * 179.97438 * 12 10 9 14 14 C 1.53007 * 109.47378 * 180.02562 * 13 12 10 15 15 C 1.53009 * 109.46704 * 300.00098 * 14 13 12 16 16 C 1.52998 * 109.47178 * 59.99871 * 14 13 12 17 17 C 1.50700 * 109.47084 * 180.02562 * 14 13 12 18 18 H 1.07995 * 120.00461 * 359.97438 * 17 14 13 19 19 C 1.37879 * 119.99733 * 180.02562 * 17 14 13 20 20 N 1.31511 * 120.00056 * 359.97438 * 19 17 14 21 21 Si 1.86793 * 119.99873 * 179.97438 * 19 17 14 22 22 H 1.48493 * 109.47404 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47381 * 119.99540 * 21 19 17 24 24 H 1.48500 * 109.47234 * 239.99145 * 21 19 17 25 25 H 1.09006 * 109.46872 * 306.21847 * 1 2 3 26 26 H 1.08993 * 109.47321 * 66.22290 * 1 2 3 27 27 H 1.09005 * 109.46981 * 186.22465 * 1 2 3 28 28 H 1.08998 * 109.46839 * 239.99994 * 2 1 3 29 29 H 1.08996 * 109.47284 * 300.00034 * 3 2 1 30 30 H 1.09000 * 109.46842 * 60.00326 * 3 2 1 31 31 H 1.08998 * 109.47311 * 180.02562 * 3 2 1 32 32 H 1.08994 * 110.93029 * 23.47452 * 6 4 2 33 33 H 1.09002 * 110.74606 * 260.21209 * 6 4 2 34 34 H 1.09005 * 111.00067 * 206.22704 * 7 6 4 35 35 H 1.08997 * 111.00732 * 82.37781 * 7 6 4 36 36 H 1.09001 * 110.37052 * 278.17357 * 8 7 6 37 37 H 1.09000 * 110.46363 * 155.89649 * 8 7 6 38 38 H 0.97007 * 120.00090 * 0.02562 * 12 10 9 39 39 H 1.08998 * 109.47269 * 300.00178 * 13 12 10 40 40 H 1.09001 * 109.47117 * 60.00289 * 13 12 10 41 41 H 1.08996 * 109.46853 * 60.00032 * 15 14 13 42 42 H 1.08998 * 109.46537 * 179.97438 * 15 14 13 43 43 H 1.08994 * 109.46931 * 299.99640 * 15 14 13 44 44 H 1.08998 * 109.46985 * 60.00382 * 16 14 13 45 45 H 1.08998 * 109.46920 * 180.02562 * 16 14 13 46 46 H 1.08996 * 109.47004 * 300.00310 * 16 14 13 47 47 H 0.97001 * 120.00153 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2493 5 1 3.1299 -0.7337 1.2536 6 6 1.5155 -0.0092 2.5138 7 6 1.2081 -1.1899 3.4725 8 6 0.6951 -2.2671 2.4847 9 7 1.5243 -2.0977 1.2775 10 6 1.7729 -3.0488 0.3556 11 8 2.3997 -2.7727 -0.6490 12 7 1.3269 -4.3061 0.5471 13 6 1.5967 -5.3398 -0.4553 14 6 0.9854 -6.6658 0.0021 15 6 1.6041 -7.0781 1.3394 16 6 -0.5263 -6.4997 0.1692 17 6 1.2636 -7.7292 -1.0288 18 1 1.8203 -7.4839 -1.9211 19 6 0.8064 -9.0152 -0.8332 20 7 0.1281 -9.3139 0.2531 21 14 1.1506 -10.3332 -2.1113 22 1 1.9262 -9.7449 -3.2327 23 1 1.9330 -11.4323 -1.4908 24 1 -0.1343 -10.8704 -2.6269 25 1 -0.3633 0.6073 0.8291 26 1 -0.3633 0.4143 -0.9404 27 1 -0.3633 -1.0217 0.1114 28 1 1.8933 -0.5138 -0.8900 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4426 -0.0005 32 1 0.6095 0.5557 2.2950 33 1 2.2814 0.6412 2.9364 34 1 0.4346 -0.9184 4.1910 35 1 2.1117 -1.5252 3.9817 36 1 -0.3557 -2.0971 2.2501 37 1 0.8331 -3.2642 2.9028 38 1 0.8265 -4.5264 1.3484 39 1 1.1557 -5.0462 -1.4078 40 1 2.6738 -5.4579 -0.5746 41 1 1.4033 -6.3090 2.0851 42 1 1.1683 -8.0225 1.6654 43 1 2.6810 -7.1965 1.2203 44 1 -0.9670 -6.2059 -0.7835 45 1 -0.9617 -7.4442 0.4954 46 1 -0.7271 -5.7306 0.9150 47 1 -0.1932 -10.2187 0.3909 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459250652.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:41 Heat of formation + Delta-G solvation = -44.210908 kcal Electronic energy + Delta-G solvation = -23786.608612 eV Core-core repulsion = 20582.857368 eV Total energy + Delta-G solvation = -3203.751244 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.34095 -38.03754 -36.16119 -34.64443 -33.08252 -31.53455 -30.45536 -28.13176 -27.12346 -25.69791 -25.60157 -24.96702 -23.29102 -22.04449 -20.22562 -19.01050 -18.62749 -17.59084 -16.52861 -15.81209 -15.33380 -15.04896 -14.75687 -14.47837 -13.96897 -13.63458 -13.46018 -13.18738 -13.01214 -12.82753 -12.59269 -12.25737 -12.15125 -12.06707 -11.81086 -11.41298 -11.32843 -11.28508 -11.17004 -10.94873 -10.85561 -10.65781 -10.63477 -10.36961 -10.32626 -10.17403 -9.60288 -9.58212 -9.26759 -8.75417 -8.56937 -8.37594 -8.04115 -5.99946 -4.09545 2.99768 3.28821 3.37383 3.42715 3.68380 4.32033 4.43089 4.47053 4.69803 4.74364 4.97960 5.06703 5.11805 5.26961 5.29247 5.36711 5.50132 5.57384 5.64067 5.64690 5.74577 5.84689 5.88508 5.98724 6.07416 6.12706 6.21973 6.32400 6.40169 6.40943 6.54191 6.63637 6.84646 6.85555 6.97472 7.06304 7.16188 7.39188 7.50461 7.58680 7.72405 8.03674 8.15397 8.41293 8.51568 8.90706 9.12635 9.56108 11.01556 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031535 B = 0.003856 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.688978 B = 7259.952547 C = 7676.187235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.111 4.111 3 C -0.142 4.142 4 C 0.164 3.836 5 H 0.069 0.931 6 C -0.131 4.131 7 C -0.131 4.131 8 C 0.100 3.900 9 N -0.637 5.637 10 C 0.716 3.284 11 O -0.595 6.595 12 N -0.732 5.732 13 C 0.151 3.849 14 C 0.055 3.945 15 C -0.128 4.128 16 C -0.128 4.128 17 C -0.503 4.503 18 H 0.058 0.942 19 C 0.066 3.934 20 N -0.886 5.886 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.285 1.285 25 H 0.051 0.949 26 H 0.049 0.951 27 H 0.055 0.945 28 H 0.089 0.911 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.393 0.607 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.004 0.996 42 H 0.085 0.915 43 H 0.026 0.974 44 H 0.026 0.974 45 H 0.085 0.915 46 H 0.004 0.996 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.433 17.751 7.585 19.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.131 4.131 3 C -0.200 4.200 4 C 0.060 3.940 5 H 0.087 0.913 6 C -0.169 4.169 7 C -0.170 4.170 8 C -0.024 4.024 9 N -0.376 5.376 10 C 0.418 3.582 11 O -0.474 6.474 12 N -0.387 5.387 13 C 0.028 3.972 14 C 0.055 3.945 15 C -0.186 4.186 16 C -0.186 4.186 17 C -0.542 4.542 18 H 0.076 0.924 19 C -0.135 4.135 20 N -0.525 5.525 21 Si 0.721 3.279 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.211 1.211 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.107 0.893 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.228 0.772 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.023 0.977 42 H 0.103 0.897 43 H 0.045 0.955 44 H 0.045 0.955 45 H 0.103 0.897 46 H 0.023 0.977 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.038 17.673 6.832 18.947 hybrid contribution -0.118 -0.929 -0.252 0.970 sum -0.156 16.744 6.580 17.991 Atomic orbital electron populations 1.21795 0.95310 1.01826 1.00831 1.21496 0.96155 0.95806 0.99633 1.21800 1.00926 0.95796 1.01509 1.21332 0.97776 0.80369 0.94546 0.91306 1.22797 1.02104 0.97455 0.94542 1.22742 1.01825 0.95277 0.97113 1.22230 0.95003 0.99623 0.85529 1.47619 1.54092 1.11269 1.24631 1.15581 0.80086 0.80335 0.82175 1.90860 1.46909 1.81110 1.28489 1.45542 1.59461 1.07765 1.25914 1.21570 0.99607 0.86660 0.89380 1.18374 0.92180 0.89609 0.94385 1.21805 0.98904 1.01407 0.96493 1.21803 0.98563 1.00765 0.97478 1.21029 1.34823 0.93408 1.04935 0.92363 1.24878 0.94842 0.98338 0.95489 1.69816 1.37274 1.19587 1.25840 0.86518 0.77968 0.81676 0.81745 1.19747 1.21089 1.21094 0.93001 0.93193 0.92549 0.89259 0.92742 0.92775 0.92780 0.89996 0.90384 0.90077 0.90664 0.91741 0.91033 0.77225 0.93041 0.93034 0.97690 0.89668 0.95476 0.95486 0.89668 0.97665 0.93118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 8.73 37.16 0.32 -1.29 16 2 C -0.11 -1.37 2.64 -90.62 -0.24 -1.61 16 3 C -0.14 -1.35 8.96 37.16 0.33 -1.01 16 4 C 0.16 2.00 2.71 -66.96 -0.18 1.82 16 5 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 6 C -0.13 -1.11 5.18 -24.90 -0.13 -1.24 16 7 C -0.13 -1.09 7.08 -24.58 -0.17 -1.27 16 8 C 0.10 1.10 6.63 -2.53 -0.02 1.08 16 9 N -0.64 -9.16 2.16 -168.70 -0.36 -9.52 16 10 C 0.72 13.50 8.31 -86.93 -0.72 12.78 16 11 O -0.59 -13.29 15.21 5.29 0.08 -13.21 16 12 N -0.73 -13.89 4.92 -65.23 -0.32 -14.21 16 13 C 0.15 3.34 4.50 -4.04 -0.02 3.32 16 14 C 0.06 1.31 0.50 -155.65 -0.08 1.23 16 15 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 16 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 17 C -0.50 -13.36 8.01 -34.44 -0.28 -13.64 16 18 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 19 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 20 N -0.89 -23.75 9.35 55.43 0.52 -23.23 16 21 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H 0.05 0.49 6.29 -51.93 -0.33 0.16 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.76 7.32 -51.93 -0.38 0.38 16 28 H 0.09 1.43 6.73 -51.93 -0.35 1.08 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.42 7.09 -51.93 -0.37 0.06 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.64 5.58 -51.93 -0.29 0.35 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.68 8.12 -51.93 -0.42 0.25 16 37 H 0.07 0.80 7.12 -51.93 -0.37 0.43 16 38 H 0.39 6.81 4.56 -40.82 -0.19 6.62 16 39 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.00 0.08 6.86 -51.93 -0.36 -0.27 16 42 H 0.08 2.15 6.07 -51.93 -0.32 1.83 16 43 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 46 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 47 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 LS Contribution 351.34 15.07 5.29 5.29 Total: -1.00 -29.15 351.34 -8.71 -37.86 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -8.23 Total: 4.62 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -0.67 Total: -3.47 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: -0.17 Total: -46.97 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: 0.08 Total: -13.21 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.15 -8.71 -37.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459250652.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.349 kcal (2) G-P(sol) polarization free energy of solvation -29.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds