Wall clock time and date at job start Tue Mar 31 2020 06:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46940 * 2 1 4 4 C 1.53004 * 109.47184 * 120.00026 * 2 1 3 5 5 H 1.08992 * 109.99483 * 179.52076 * 4 2 1 6 6 C 1.54311 * 109.77156 * 300.67812 * 4 2 1 7 7 C 1.55160 * 102.86075 * 141.88852 * 6 4 2 8 8 C 1.54904 * 101.58117 * 324.29842 * 7 6 4 9 9 N 1.47018 * 109.88093 * 58.42745 * 4 2 1 10 10 C 1.34773 * 125.65123 * 61.67838 * 9 4 2 11 11 O 1.21590 * 120.00036 * 354.78896 * 10 9 4 12 12 N 1.34770 * 120.00467 * 174.79088 * 10 9 4 13 13 C 1.46497 * 120.00315 * 179.97438 * 12 10 9 14 14 C 1.53007 * 109.47378 * 180.02562 * 13 12 10 15 15 C 1.53009 * 109.46704 * 300.00098 * 14 13 12 16 16 C 1.52998 * 109.47178 * 59.99871 * 14 13 12 17 17 C 1.50700 * 109.47084 * 180.02562 * 14 13 12 18 18 H 1.07995 * 120.00461 * 359.97438 * 17 14 13 19 19 C 1.37879 * 119.99733 * 180.02562 * 17 14 13 20 20 N 1.31511 * 120.00056 * 359.97438 * 19 17 14 21 21 Si 1.86793 * 119.99873 * 179.97438 * 19 17 14 22 22 H 1.48493 * 109.47404 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47381 * 119.99540 * 21 19 17 24 24 H 1.48500 * 109.47234 * 239.99145 * 21 19 17 25 25 H 1.09006 * 109.46872 * 306.21847 * 1 2 3 26 26 H 1.08993 * 109.47321 * 66.22290 * 1 2 3 27 27 H 1.09005 * 109.46981 * 186.22465 * 1 2 3 28 28 H 1.08998 * 109.46839 * 239.99994 * 2 1 3 29 29 H 1.08996 * 109.47284 * 300.00034 * 3 2 1 30 30 H 1.09000 * 109.46842 * 60.00326 * 3 2 1 31 31 H 1.08998 * 109.47311 * 180.02562 * 3 2 1 32 32 H 1.08994 * 110.93029 * 23.47452 * 6 4 2 33 33 H 1.09002 * 110.74606 * 260.21209 * 6 4 2 34 34 H 1.09005 * 111.00067 * 206.22704 * 7 6 4 35 35 H 1.08997 * 111.00732 * 82.37781 * 7 6 4 36 36 H 1.09001 * 110.37052 * 278.17357 * 8 7 6 37 37 H 1.09000 * 110.46363 * 155.89649 * 8 7 6 38 38 H 0.97007 * 120.00090 * 0.02562 * 12 10 9 39 39 H 1.08998 * 109.47269 * 300.00178 * 13 12 10 40 40 H 1.09001 * 109.47117 * 60.00289 * 13 12 10 41 41 H 1.08996 * 109.46853 * 60.00032 * 15 14 13 42 42 H 1.08998 * 109.46537 * 179.97438 * 15 14 13 43 43 H 1.08994 * 109.46931 * 299.99640 * 15 14 13 44 44 H 1.08998 * 109.46985 * 60.00382 * 16 14 13 45 45 H 1.08998 * 109.46920 * 180.02562 * 16 14 13 46 46 H 1.08996 * 109.47004 * 300.00310 * 16 14 13 47 47 H 0.97001 * 120.00153 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2493 5 1 3.1299 -0.7337 1.2536 6 6 1.5155 -0.0092 2.5138 7 6 1.2081 -1.1899 3.4725 8 6 0.6951 -2.2671 2.4847 9 7 1.5243 -2.0977 1.2775 10 6 1.7729 -3.0488 0.3556 11 8 2.3997 -2.7727 -0.6490 12 7 1.3269 -4.3061 0.5471 13 6 1.5967 -5.3398 -0.4553 14 6 0.9854 -6.6658 0.0021 15 6 1.6041 -7.0781 1.3394 16 6 -0.5263 -6.4997 0.1692 17 6 1.2636 -7.7292 -1.0288 18 1 1.8203 -7.4839 -1.9211 19 6 0.8064 -9.0152 -0.8332 20 7 0.1281 -9.3139 0.2531 21 14 1.1506 -10.3332 -2.1113 22 1 1.9262 -9.7449 -3.2327 23 1 1.9330 -11.4323 -1.4908 24 1 -0.1343 -10.8704 -2.6269 25 1 -0.3633 0.6073 0.8291 26 1 -0.3633 0.4143 -0.9404 27 1 -0.3633 -1.0217 0.1114 28 1 1.8933 -0.5138 -0.8900 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4426 -0.0005 32 1 0.6095 0.5557 2.2950 33 1 2.2814 0.6412 2.9364 34 1 0.4346 -0.9184 4.1910 35 1 2.1117 -1.5252 3.9817 36 1 -0.3557 -2.0971 2.2501 37 1 0.8331 -3.2642 2.9028 38 1 0.8265 -4.5264 1.3484 39 1 1.1557 -5.0462 -1.4078 40 1 2.6738 -5.4579 -0.5746 41 1 1.4033 -6.3090 2.0851 42 1 1.1683 -8.0225 1.6654 43 1 2.6810 -7.1965 1.2203 44 1 -0.9670 -6.2059 -0.7835 45 1 -0.9617 -7.4442 0.4954 46 1 -0.7271 -5.7306 0.9150 47 1 -0.1932 -10.2187 0.3909 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459250652.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:40 Heat of formation + Delta-G solvation = -59.732689 kcal Electronic energy + Delta-G solvation = -23787.281686 eV Core-core repulsion = 20582.857368 eV Total energy + Delta-G solvation = -3204.424319 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.56009 -39.38965 -37.92003 -35.69538 -34.76834 -32.96093 -31.94260 -29.03367 -27.97255 -27.58632 -27.46098 -26.73387 -24.47777 -22.87441 -21.44017 -20.61898 -20.11030 -18.82224 -17.83092 -17.52338 -16.65477 -16.62840 -16.24447 -15.69742 -15.44379 -14.94469 -14.75546 -14.42533 -14.28606 -14.10818 -13.93917 -13.81214 -13.22206 -13.12600 -13.01933 -12.88411 -12.75013 -12.67146 -12.57216 -12.28300 -12.19202 -12.13257 -12.05151 -11.86333 -11.50596 -11.47955 -11.32959 -11.19924 -10.96735 -10.71345 -10.40929 -10.07792 -9.37399 -8.03026 -6.18589 1.41142 1.44984 1.54652 1.72255 2.20233 2.45732 3.14498 3.20525 3.68872 3.70695 3.93353 4.12886 4.21709 4.24847 4.40218 4.50612 4.51005 4.57206 4.64602 4.68651 4.79617 4.81874 4.95090 4.96688 5.00373 5.03281 5.06449 5.09442 5.10214 5.16308 5.17845 5.28076 5.32852 5.36454 5.38712 5.49204 5.63266 5.65107 5.65295 5.66945 6.12804 6.14887 6.20546 6.42801 6.85111 7.08227 7.49041 7.64745 8.96357 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031535 B = 0.003856 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.688978 B = 7259.952547 C = 7676.187235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.111 4.111 3 C -0.135 4.135 4 C 0.154 3.846 5 H 0.052 0.948 6 C -0.119 4.119 7 C -0.121 4.121 8 C 0.088 3.912 9 N -0.632 5.632 10 C 0.710 3.290 11 O -0.638 6.638 12 N -0.726 5.726 13 C 0.169 3.831 14 C 0.052 3.948 15 C -0.116 4.116 16 C -0.116 4.116 17 C -0.528 4.528 18 H 0.043 0.957 19 C 0.029 3.971 20 N -0.898 5.898 21 Si 0.946 3.054 22 H -0.277 1.277 23 H -0.280 1.280 24 H -0.280 1.280 25 H 0.082 0.918 26 H 0.047 0.953 27 H 0.031 0.969 28 H 0.040 0.960 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.051 0.949 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.111 0.889 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.402 0.598 39 H 0.032 0.968 40 H 0.032 0.968 41 H 0.033 0.967 42 H 0.064 0.936 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.064 0.936 46 H 0.033 0.967 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.251 19.560 9.737 21.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.131 4.131 3 C -0.193 4.193 4 C 0.050 3.950 5 H 0.071 0.929 6 C -0.157 4.157 7 C -0.159 4.159 8 C -0.034 4.034 9 N -0.369 5.369 10 C 0.412 3.588 11 O -0.520 6.520 12 N -0.382 5.382 13 C 0.045 3.955 14 C 0.051 3.949 15 C -0.174 4.174 16 C -0.174 4.174 17 C -0.567 4.567 18 H 0.061 0.939 19 C -0.171 4.171 20 N -0.537 5.537 21 Si 0.773 3.227 22 H -0.201 1.201 23 H -0.206 1.206 24 H -0.206 1.206 25 H 0.100 0.900 26 H 0.066 0.934 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.070 0.930 32 H 0.115 0.885 33 H 0.119 0.881 34 H 0.130 0.870 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.239 0.761 39 H 0.050 0.950 40 H 0.051 0.949 41 H 0.052 0.948 42 H 0.083 0.917 43 H 0.036 0.964 44 H 0.035 0.965 45 H 0.083 0.917 46 H 0.052 0.948 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.878 19.512 9.039 21.522 hybrid contribution 0.142 -1.451 -0.919 1.723 sum -0.736 18.061 8.120 19.816 Atomic orbital electron populations 1.21751 0.94498 1.00863 1.02052 1.21431 0.96785 0.97195 0.97697 1.21749 1.00805 0.93807 1.02945 1.21609 0.97105 0.79545 0.96723 0.92946 1.22804 1.03232 0.97459 0.92159 1.22755 1.02716 0.93725 0.96667 1.22566 0.95147 1.00978 0.84736 1.47665 1.53583 1.11214 1.24457 1.15751 0.79783 0.80754 0.82515 1.90829 1.48762 1.81831 1.30620 1.45248 1.59908 1.07496 1.25569 1.21102 0.97996 0.87001 0.89420 1.18370 0.92868 0.89492 0.94180 1.21631 0.97908 1.01220 0.96666 1.21628 0.97581 1.00499 0.97705 1.21273 1.35265 0.94799 1.05361 0.93881 1.25442 0.94745 0.99799 0.97067 1.69907 1.37292 1.19953 1.26568 0.85688 0.77817 0.79493 0.79696 1.20150 1.20588 1.20603 0.89964 0.93358 0.94937 0.94133 0.92519 0.90063 0.92996 0.88515 0.88100 0.87046 0.90573 0.90664 0.91101 0.76084 0.94990 0.94940 0.94843 0.91700 0.96433 0.96464 0.91703 0.94817 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 8.73 71.98 0.63 -2.27 16 2 C -0.11 -2.68 2.64 -10.79 -0.03 -2.71 16 3 C -0.14 -2.30 8.96 71.98 0.65 -1.66 16 4 C 0.15 3.55 2.71 45.34 0.12 3.68 16 5 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 6 C -0.12 -1.54 5.18 31.78 0.16 -1.38 16 7 C -0.12 -1.51 7.08 31.99 0.23 -1.28 16 8 C 0.09 1.72 6.63 86.85 0.58 2.29 16 9 N -0.63 -17.72 2.16 -805.92 -1.74 -19.45 16 10 C 0.71 27.30 8.31 179.06 1.49 28.79 16 11 O -0.64 -29.94 15.21 -4.00 -0.06 -30.00 16 12 N -0.73 -27.75 4.92 -478.54 -2.35 -30.10 16 13 C 0.17 7.74 4.50 86.38 0.39 8.12 16 14 C 0.05 2.47 0.50 -52.92 -0.03 2.45 16 15 C -0.12 -5.32 8.08 71.99 0.58 -4.74 16 16 C -0.12 -5.32 8.08 71.98 0.58 -4.74 16 17 C -0.53 -28.69 8.01 25.60 0.21 -28.48 16 18 H 0.04 2.41 7.74 -2.91 -0.02 2.38 16 19 C 0.03 1.56 5.15 84.66 0.44 2.00 16 20 N -0.90 -48.24 9.35 21.45 0.20 -48.04 16 21 Si 0.95 43.21 29.54 68.60 2.03 45.23 16 22 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 23 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 24 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 25 H 0.08 1.25 6.29 -2.38 -0.01 1.24 16 26 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.03 0.84 7.32 -2.38 -0.02 0.83 16 28 H 0.04 1.37 6.73 -2.39 -0.02 1.35 16 29 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.08 0.95 7.09 -2.39 -0.02 0.94 16 31 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.10 1.01 5.58 -2.39 -0.01 1.00 16 33 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.11 0.82 8.14 -2.38 -0.02 0.80 16 35 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.08 1.35 8.12 -2.39 -0.02 1.33 16 37 H 0.07 1.40 7.12 -2.39 -0.02 1.39 16 38 H 0.40 13.53 4.56 -92.70 -0.42 13.11 16 39 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.03 1.29 6.86 -2.39 -0.02 1.27 16 42 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 43 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 46 H 0.03 1.30 6.86 -2.39 -0.02 1.28 16 47 H 0.26 13.40 8.31 -92.71 -0.77 12.63 16 Total: -1.00 -65.80 351.34 4.58 -61.23 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: 0.51 Total: 21.07 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 5.99 Total: 0.07 kcal Atomic # 7 Polarization: -93.71 SS G_CDS: -3.89 Total: -97.60 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -0.06 Total: -30.00 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -65.80 4.58 -61.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459250652.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.493 kcal (2) G-P(sol) polarization free energy of solvation -65.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds