Wall clock time and date at job start Tue Mar 31 2020 06:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46840 * 2 1 4 4 C 1.53002 * 109.47254 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47474 * 180.02562 * 4 3 2 6 6 C 1.34775 * 120.00229 * 270.00268 * 5 4 3 7 7 O 1.21578 * 120.00252 * 189.13256 * 6 5 4 8 8 N 1.34775 * 119.99731 * 9.13645 * 6 5 4 9 9 C 1.46503 * 120.00154 * 183.94172 * 8 6 5 10 10 C 1.52993 * 109.47702 * 180.02562 * 9 8 6 11 11 C 1.53007 * 109.46785 * 300.00363 * 10 9 8 12 12 C 1.52999 * 109.46884 * 59.99757 * 10 9 8 13 13 C 1.50693 * 109.47184 * 180.02562 * 10 9 8 14 14 H 1.07997 * 120.00374 * 359.97438 * 13 10 9 15 15 C 1.37884 * 119.99918 * 180.02562 * 13 10 9 16 16 N 1.31513 * 119.99700 * 359.97438 * 15 13 10 17 17 Si 1.86793 * 120.00053 * 179.97438 * 15 13 10 18 18 H 1.48504 * 109.47494 * 89.99980 * 17 15 13 19 19 H 1.48505 * 109.47273 * 209.99731 * 17 15 13 20 20 H 1.48500 * 109.47518 * 330.00008 * 17 15 13 21 21 C 1.46500 * 119.99912 * 90.00319 * 5 4 3 22 22 C 1.52991 * 117.50281 * 195.82413 * 21 5 4 23 23 C 1.52999 * 117.49865 * 127.19744 * 21 5 4 24 24 H 1.08998 * 109.47381 * 299.99673 * 1 2 3 25 25 H 1.08999 * 109.47182 * 59.99833 * 1 2 3 26 26 H 1.09004 * 109.46929 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47381 * 240.00326 * 2 1 3 28 28 H 1.08999 * 109.47182 * 120.00167 * 2 1 3 29 29 H 1.09011 * 109.47220 * 60.00085 * 3 2 1 30 30 H 1.08999 * 109.47369 * 300.00053 * 3 2 1 31 31 H 1.09001 * 109.46583 * 59.99948 * 4 3 2 32 32 H 1.08999 * 109.47261 * 300.00469 * 4 3 2 33 33 H 0.97001 * 120.00402 * 3.94265 * 8 6 5 34 34 H 1.09003 * 109.46778 * 300.00566 * 9 8 6 35 35 H 1.09003 * 109.46937 * 59.99730 * 9 8 6 36 36 H 1.08996 * 109.47292 * 59.99549 * 11 10 9 37 37 H 1.09002 * 109.46723 * 180.02562 * 11 10 9 38 38 H 1.09003 * 109.46834 * 299.99686 * 11 10 9 39 39 H 1.09000 * 109.47232 * 60.00795 * 12 10 9 40 40 H 1.09009 * 109.47019 * 180.02562 * 12 10 9 41 41 H 1.09000 * 109.47481 * 300.00066 * 12 10 9 42 42 H 0.97008 * 119.99878 * 180.02562 * 16 15 13 43 43 H 1.09009 * 115.54671 * 341.53099 * 21 5 4 44 44 H 1.09009 * 117.49660 * 359.97438 * 22 21 5 45 45 H 1.09000 * 117.50121 * 145.01771 * 22 21 5 46 46 H 1.09001 * 117.50147 * 214.97674 * 23 21 5 47 47 H 1.08995 * 117.49852 * 359.97438 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0583 2.8238 0.0013 6 6 4.2833 3.4596 -1.1656 7 8 4.8423 4.5392 -1.1717 8 7 3.8887 2.8984 -2.3257 9 6 4.2094 3.5471 -3.5996 10 6 3.6505 2.7111 -4.7526 11 6 4.2752 1.3148 -4.7197 12 6 2.1319 2.5939 -4.6081 13 6 3.9810 3.3781 -6.0629 14 1 4.5340 4.3057 -6.0723 15 6 3.5765 2.8045 -7.2497 16 7 2.9026 1.6752 -7.2382 17 14 3.9855 3.6316 -8.8739 18 1 5.2947 3.1337 -9.3671 19 1 2.9294 3.3170 -9.8694 20 1 4.0576 5.1017 -8.6765 21 6 4.3020 3.5140 1.2703 22 6 4.4477 5.0364 1.2299 23 6 5.6757 4.1565 1.4726 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6766 1.9564 0.8901 30 1 1.6766 1.9563 -0.8900 31 1 3.9336 0.9286 -0.8891 32 1 3.9330 0.9289 0.8908 33 1 3.3923 2.0651 -2.3173 34 1 3.7640 4.5417 -3.6231 35 1 5.2913 3.6310 -3.7023 36 1 4.0366 0.8322 -3.7720 37 1 3.8774 0.7193 -5.5415 38 1 5.3572 1.3983 -4.8226 39 1 1.6868 3.5886 -4.6316 40 1 1.7337 1.9979 -5.4294 41 1 1.8932 2.1112 -3.6604 42 1 2.6183 1.2715 -8.0732 43 1 3.8169 3.0775 2.1435 44 1 4.3627 5.5246 0.2590 45 1 4.0585 5.6019 2.0765 46 1 6.0943 4.1433 2.4789 47 1 6.3982 4.0654 0.6617 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459252506.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:22 Heat of formation + Delta-G solvation = -11.050114 kcal Electronic energy + Delta-G solvation = -23687.137514 eV Core-core repulsion = 20484.824230 eV Total energy + Delta-G solvation = -3202.313284 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.28285 -37.17163 -36.22998 -35.60089 -33.61618 -32.63473 -30.60557 -28.62729 -25.71558 -25.66633 -24.95216 -23.65443 -22.39692 -22.16291 -21.20642 -19.58326 -18.73072 -17.39983 -16.44181 -15.87803 -15.30640 -15.21931 -14.86880 -14.63255 -14.05893 -13.88008 -13.50309 -13.11564 -12.97463 -12.92652 -12.84404 -12.37431 -12.14063 -11.78323 -11.45502 -11.42847 -11.19490 -11.13384 -11.11284 -10.87240 -10.76280 -10.67295 -10.65854 -10.36204 -10.19200 -10.17969 -9.61515 -9.38760 -9.22563 -8.77691 -8.45350 -8.35011 -8.00848 -6.00858 -4.10551 2.90345 3.29352 3.36326 3.40768 3.50109 4.10037 4.30825 4.44583 4.74941 4.85526 4.98939 5.02839 5.07182 5.17872 5.25124 5.26012 5.43886 5.54592 5.59871 5.66902 5.76914 5.85527 5.87289 6.06012 6.13035 6.18038 6.24371 6.27616 6.38244 6.51885 6.57194 6.78283 6.83739 6.90603 6.96520 7.04490 7.16644 7.29166 7.40952 7.57082 7.71048 8.02243 8.13740 8.39194 8.45412 8.89229 9.06549 9.55090 11.00565 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016420 B = 0.004852 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.791697 B = 5769.083603 C = 7090.522671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.143 4.143 4 C 0.113 3.887 5 N -0.609 5.609 6 C 0.701 3.299 7 O -0.590 6.590 8 N -0.731 5.731 9 C 0.148 3.852 10 C 0.056 3.944 11 C -0.129 4.129 12 C -0.129 4.129 13 C -0.504 4.504 14 H 0.057 0.943 15 C 0.066 3.934 16 N -0.886 5.886 17 Si 0.893 3.107 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.090 3.910 22 C -0.192 4.192 23 C -0.189 4.189 24 H 0.051 0.949 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.394 0.606 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.004 0.996 37 H 0.085 0.915 38 H 0.026 0.974 39 H 0.026 0.974 40 H 0.085 0.915 41 H 0.004 0.996 42 H 0.259 0.741 43 H 0.123 0.877 44 H 0.138 0.862 45 H 0.083 0.917 46 H 0.088 0.912 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.108 -3.688 16.379 16.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.182 4.182 4 C -0.010 4.010 5 N -0.345 5.345 6 C 0.403 3.597 7 O -0.469 6.469 8 N -0.387 5.387 9 C 0.025 3.975 10 C 0.056 3.944 11 C -0.187 4.187 12 C -0.186 4.186 13 C -0.543 4.543 14 H 0.076 0.924 15 C -0.135 4.135 16 N -0.525 5.525 17 Si 0.721 3.279 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.016 4.016 22 C -0.229 4.229 23 C -0.228 4.228 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.230 0.770 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.023 0.977 37 H 0.104 0.896 38 H 0.045 0.955 39 H 0.045 0.955 40 H 0.103 0.897 41 H 0.023 0.977 42 H 0.069 0.931 43 H 0.140 0.860 44 H 0.155 0.845 45 H 0.101 0.899 46 H 0.107 0.893 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.774 -3.041 16.179 16.558 hybrid contribution -0.051 -0.072 -0.824 0.829 sum -1.825 -3.112 15.355 15.774 Atomic orbital electron populations 1.21755 0.95693 1.01549 1.01946 1.21463 0.96180 0.96227 1.02196 1.22141 0.95562 0.97344 1.03115 1.21548 0.93910 0.82368 1.03185 1.46523 1.70471 1.13569 1.03891 1.16071 0.79589 0.83783 0.80304 1.90724 1.48768 1.21679 1.85775 1.45732 1.59475 1.28130 1.05335 1.21591 0.99238 0.96239 0.80388 1.18353 0.92379 0.92241 0.91455 1.21820 0.98745 0.99156 0.98964 1.21809 0.98267 0.99710 0.98842 1.20980 1.35442 1.08044 0.89816 0.92437 1.24874 0.94804 0.94890 0.98930 1.69807 1.38132 1.17996 1.26545 0.86576 0.77966 0.79941 0.83409 1.20738 1.21295 1.19904 1.21353 1.00360 0.93572 0.86273 1.23801 1.01061 0.92654 1.05383 1.23253 0.92279 1.05245 1.01993 0.92992 0.92401 0.92789 0.91497 0.92063 0.91597 0.91251 0.90467 0.90314 0.76966 0.92896 0.93069 0.97744 0.89616 0.95473 0.95471 0.89656 0.97667 0.93054 0.85969 0.84482 0.89854 0.89348 0.88416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 37.16 0.37 -0.99 16 2 C -0.12 -1.11 5.93 -26.73 -0.16 -1.27 16 3 C -0.14 -1.49 5.42 -26.73 -0.14 -1.64 16 4 C 0.11 1.27 5.06 -4.04 -0.02 1.25 16 5 N -0.61 -8.69 2.84 -171.80 -0.49 -9.18 16 6 C 0.70 12.80 8.04 -86.92 -0.70 12.10 16 7 O -0.59 -12.45 12.10 5.30 0.06 -12.39 16 8 N -0.73 -13.52 4.74 -65.23 -0.31 -13.83 16 9 C 0.15 3.22 4.51 -4.04 -0.02 3.20 16 10 C 0.06 1.31 0.50 -155.66 -0.08 1.24 16 11 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 12 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 13 C -0.50 -13.24 8.01 -34.44 -0.28 -13.51 16 14 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 15 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 16 N -0.89 -23.54 9.35 55.43 0.52 -23.02 16 17 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 21 C 0.09 1.13 6.60 -67.94 -0.45 0.69 16 22 C -0.19 -2.65 9.62 -26.73 -0.26 -2.90 16 23 C -0.19 -2.47 9.87 -26.73 -0.26 -2.73 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 30 H 0.07 0.88 7.64 -51.93 -0.40 0.48 16 31 H 0.08 0.92 6.85 -51.93 -0.36 0.56 16 32 H 0.08 0.71 8.07 -51.93 -0.42 0.30 16 33 H 0.39 6.69 3.66 -40.82 -0.15 6.55 16 34 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.00 0.07 6.86 -51.93 -0.36 -0.28 16 37 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 38 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 2.13 6.07 -51.92 -0.32 1.81 16 41 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 42 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 43 H 0.12 1.18 8.14 -51.92 -0.42 0.76 16 44 H 0.14 2.41 5.29 -51.95 -0.27 2.14 16 45 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 47 H 0.10 1.54 7.54 -51.93 -0.39 1.15 16 LS Contribution 361.50 15.07 5.45 5.45 Total: -1.00 -28.03 361.50 -9.64 -37.68 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -8.37 Total: 7.70 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: -1.49 Total: -8.15 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: -0.28 Total: -46.02 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.06 Total: -12.39 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.03 -9.64 -37.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459252506.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.626 kcal (2) G-P(sol) polarization free energy of solvation -28.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds