Wall clock time and date at job start Tue Mar 31 2020 06:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46501 * 120.00098 * 2 1 4 4 C 1.52995 * 109.46937 * 90.00021 * 3 2 1 5 5 C 1.54263 * 110.03737 * 292.90710 * 4 3 2 6 6 C 1.54957 * 104.16151 * 217.13627 * 5 4 3 7 7 C 1.54884 * 102.77886 * 37.88640 * 6 5 4 8 8 C 1.53879 * 110.03324 * 175.68737 * 4 3 2 9 9 C 1.34771 * 119.99594 * 180.02562 * 2 1 3 10 10 O 1.21593 * 120.00167 * 179.97438 * 9 2 1 11 11 N 1.34780 * 120.00532 * 359.97438 * 9 2 1 12 12 C 1.46496 * 120.00367 * 179.97438 * 11 9 2 13 13 C 1.52993 * 109.47399 * 180.02562 * 12 11 9 14 14 C 1.53005 * 109.47103 * 300.00137 * 13 12 11 15 15 C 1.52997 * 109.47158 * 59.99768 * 13 12 11 16 16 C 1.50700 * 109.47458 * 180.02562 * 13 12 11 17 17 H 1.08002 * 120.00079 * 0.02562 * 16 13 12 18 18 C 1.37880 * 120.00195 * 179.97438 * 16 13 12 19 19 N 1.31514 * 119.99793 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 120.00027 * 179.97438 * 18 16 13 21 21 H 1.48496 * 109.46989 * 90.00259 * 20 18 16 22 22 H 1.48503 * 109.46975 * 210.00419 * 20 18 16 23 23 H 1.48504 * 109.46986 * 330.00098 * 20 18 16 24 24 H 1.09001 * 109.47060 * 270.00243 * 1 2 3 25 25 H 1.09004 * 109.47073 * 29.99732 * 1 2 3 26 26 H 1.09000 * 109.47212 * 149.99814 * 1 2 3 27 27 H 1.09000 * 109.46877 * 210.00112 * 3 2 1 28 28 H 1.09000 * 109.47251 * 330.00217 * 3 2 1 29 29 H 1.09003 * 110.01600 * 54.30286 * 4 3 2 30 30 H 1.09008 * 110.48404 * 335.78661 * 5 4 3 31 31 H 1.09005 * 110.48480 * 98.42499 * 5 4 3 32 32 H 1.09000 * 110.72104 * 279.57246 * 6 5 4 33 33 H 1.09001 * 110.92137 * 156.29310 * 6 5 4 34 34 H 1.08999 * 110.48816 * 203.40060 * 7 6 5 35 35 H 1.09009 * 110.59944 * 80.81467 * 7 6 5 36 36 H 1.08994 * 110.03500 * 238.57392 * 8 4 3 37 37 H 1.09003 * 110.02530 * 0.02562 * 8 4 3 38 38 H 0.97000 * 119.99501 * 0.02562 * 11 9 2 39 39 H 1.09004 * 109.47298 * 300.00557 * 12 11 9 40 40 H 1.09000 * 109.47160 * 60.00094 * 12 11 9 41 41 H 1.08998 * 109.46994 * 59.99826 * 14 13 12 42 42 H 1.08998 * 109.47330 * 179.97438 * 14 13 12 43 43 H 1.09000 * 109.47042 * 300.00276 * 14 13 12 44 44 H 1.08999 * 109.46837 * 60.00807 * 15 13 12 45 45 H 1.09006 * 109.47120 * 180.02562 * 15 13 12 46 46 H 1.08998 * 109.47327 * 300.00412 * 15 13 12 47 47 H 0.97006 * 120.00061 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 6 1.1186 2.0698 2.1288 6 6 1.4692 3.2831 3.0267 7 6 2.4737 4.0760 2.1543 8 6 3.3142 2.9852 1.4590 9 6 2.1388 -1.1672 -0.0005 10 8 3.3548 -1.1673 -0.0010 11 7 1.4650 -2.3344 -0.0005 12 6 2.1974 -3.6032 -0.0017 13 6 1.2032 -4.7660 -0.0021 14 6 0.3240 -4.6858 1.2476 15 6 0.3231 -4.6841 -1.2508 16 6 1.9566 -6.0712 -0.0026 17 1 3.0366 -6.0713 -0.0022 18 6 1.2672 -7.2652 -0.0025 19 7 -0.0479 -7.2652 -0.0024 20 14 2.2012 -8.8830 -0.0039 21 1 2.4497 -9.3122 1.3958 22 1 1.3980 -9.9176 -0.7037 23 1 3.4982 -8.7052 -0.7049 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5139 27 1 3.1500 1.1383 -0.5139 28 1 1.6085 2.0284 -0.5138 29 1 2.9533 0.9142 1.9934 30 1 0.3705 2.3482 1.3864 31 1 0.7643 1.2357 2.7345 32 1 1.9385 2.9540 3.9538 33 1 0.5825 3.8818 3.2356 34 1 3.1074 4.7056 2.7789 35 1 1.9468 4.6803 1.4158 36 1 4.2325 2.8080 2.0186 37 1 3.5502 3.2894 0.4392 38 1 0.4949 -2.3344 -0.0005 39 1 2.8235 -3.6605 -0.8921 40 1 2.8247 -3.6613 0.8878 41 1 -0.2209 -3.7418 1.2484 42 1 -0.3846 -5.5140 1.2471 43 1 0.9510 -4.7441 2.1373 44 1 0.9494 -4.7414 -2.1411 45 1 -0.3856 -5.5124 -1.2509 46 1 -0.2219 -3.7402 -1.2500 47 1 -0.5330 -8.1052 -0.0020 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459260437.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:48 Heat of formation + Delta-G solvation = -49.531880 kcal Electronic energy + Delta-G solvation = -23284.820082 eV Core-core repulsion = 20080.838103 eV Total energy + Delta-G solvation = -3203.981979 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.98619 -38.27592 -36.42041 -34.99767 -33.25053 -31.03431 -29.95695 -28.78444 -26.80525 -25.76244 -25.70228 -25.14924 -23.61063 -20.85218 -19.97457 -19.46100 -18.78694 -17.68546 -16.43129 -15.83485 -15.71951 -15.34515 -14.78866 -14.64211 -13.93064 -13.70289 -13.56384 -13.47052 -13.09369 -12.81885 -12.55283 -12.51887 -12.15674 -11.95060 -11.40763 -11.30987 -11.20935 -11.17169 -11.16315 -10.90578 -10.82798 -10.78401 -10.66876 -10.43628 -10.35553 -10.18001 -9.66367 -9.60385 -9.26975 -8.76686 -8.60102 -8.37948 -8.07592 -6.00161 -4.09870 3.03633 3.29909 3.36726 3.41331 3.66787 4.36312 4.48040 4.48429 4.54235 4.64525 5.08269 5.15880 5.22213 5.26658 5.30370 5.42429 5.46246 5.49083 5.54116 5.63845 5.71226 5.75388 5.84368 5.90301 5.98527 6.12442 6.17566 6.24199 6.34358 6.40378 6.53352 6.71510 6.84023 6.84722 6.95880 7.05913 7.15031 7.30503 7.42530 7.58305 7.71904 8.03410 8.14850 8.40573 8.48438 8.90113 9.09632 9.55767 11.01321 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035661 B = 0.003313 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.987172 B = 8449.964139 C = 8600.743529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.637 5.637 3 C 0.144 3.856 4 C -0.110 4.110 5 C -0.115 4.115 6 C -0.126 4.126 7 C -0.124 4.124 8 C -0.117 4.117 9 C 0.699 3.301 10 O -0.598 6.598 11 N -0.733 5.733 12 C 0.149 3.851 13 C 0.056 3.944 14 C -0.129 4.129 15 C -0.129 4.129 16 C -0.505 4.505 17 H 0.058 0.942 18 C 0.066 3.934 19 N -0.887 5.887 20 Si 0.893 3.107 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 H 0.053 0.947 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.393 0.607 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.004 0.996 42 H 0.085 0.915 43 H 0.026 0.974 44 H 0.026 0.974 45 H 0.085 0.915 46 H 0.004 0.996 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.884 19.633 2.251 19.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.376 5.376 3 C 0.020 3.980 4 C -0.130 4.130 5 C -0.153 4.153 6 C -0.164 4.164 7 C -0.161 4.161 8 C -0.155 4.155 9 C 0.400 3.600 10 O -0.477 6.477 11 N -0.389 5.389 12 C 0.026 3.974 13 C 0.055 3.945 14 C -0.187 4.187 15 C -0.187 4.187 16 C -0.543 4.543 17 H 0.076 0.924 18 C -0.135 4.135 19 N -0.525 5.525 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 H 0.071 0.929 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.100 0.900 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.230 0.770 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.023 0.977 42 H 0.103 0.897 43 H 0.045 0.955 44 H 0.046 0.954 45 H 0.104 0.896 46 H 0.023 0.977 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.143 19.444 2.226 19.604 hybrid contribution -0.093 -0.918 0.058 0.925 sum -1.236 18.526 2.284 18.707 Atomic orbital electron populations 1.21721 0.80396 1.02626 1.01527 1.47002 1.05978 1.05110 1.79471 1.21397 0.97384 0.83498 0.95708 1.22217 0.96016 0.97675 0.97065 1.22445 0.96966 0.97491 0.98373 1.22516 0.98749 0.96756 0.98357 1.22352 0.97679 0.97448 0.98652 1.22125 0.98373 0.94284 1.00768 1.16022 0.85411 0.80512 0.78068 1.90869 1.11710 1.86372 1.58734 1.45654 1.10065 1.05119 1.78049 1.21569 0.94988 0.80547 1.00262 1.18356 0.91952 0.91389 0.92767 1.21813 1.00223 0.99005 0.97620 1.21814 1.00232 0.98990 0.97648 1.20999 0.92917 0.89740 1.50672 0.92406 1.24879 0.94875 0.98946 0.94828 1.69808 1.05772 1.26235 1.50733 0.86571 0.79913 0.83293 0.78094 1.20727 1.21294 1.19887 0.92883 0.91300 0.91495 0.90038 0.91117 0.90508 0.91730 0.91879 0.91711 0.91886 0.92006 0.91814 0.91760 0.91677 0.77009 0.93049 0.93038 0.97666 0.89655 0.95477 0.95441 0.89636 0.97698 0.93050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.86 9.11 59.85 0.55 1.41 16 2 N -0.64 -8.92 2.79 -187.34 -0.52 -9.44 16 3 C 0.14 1.73 4.57 -4.04 -0.02 1.71 16 4 C -0.11 -1.23 3.15 -89.50 -0.28 -1.52 16 5 C -0.12 -1.11 5.20 -25.04 -0.13 -1.24 16 6 C -0.13 -1.06 6.91 -24.70 -0.17 -1.23 16 7 C -0.12 -0.98 6.83 -25.08 -0.17 -1.15 16 8 C -0.12 -1.10 6.46 -25.61 -0.17 -1.26 16 9 C 0.70 13.03 8.28 -86.92 -0.72 12.31 16 10 O -0.60 -13.35 15.92 5.28 0.08 -13.27 16 11 N -0.73 -13.79 4.82 -65.23 -0.31 -14.10 16 12 C 0.15 3.30 4.50 -4.05 -0.02 3.28 16 13 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 14 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 15 C -0.13 -2.95 8.08 37.16 0.30 -2.64 16 16 C -0.50 -13.39 8.01 -34.44 -0.28 -13.67 16 17 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 18 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 19 N -0.89 -23.75 9.35 55.43 0.52 -23.23 16 20 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 23 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 24 H 0.05 0.53 7.74 -51.93 -0.40 0.12 16 25 H 0.07 0.56 7.89 -51.93 -0.41 0.15 16 26 H 0.07 0.74 6.36 -51.93 -0.33 0.41 16 27 H 0.08 1.13 7.42 -51.93 -0.39 0.75 16 28 H 0.07 0.67 7.77 -51.93 -0.40 0.27 16 29 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.06 0.56 7.32 -51.92 -0.38 0.18 16 31 H 0.06 0.67 8.11 -51.93 -0.42 0.25 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.56 7.67 -51.93 -0.40 0.17 16 38 H 0.39 6.70 3.89 -40.82 -0.16 6.54 16 39 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 40 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 42 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 43 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 46 H 0.00 0.08 6.86 -51.93 -0.36 -0.27 16 47 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 LS Contribution 356.10 15.07 5.37 5.37 Total: -1.00 -29.24 356.10 -9.27 -38.51 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -8.40 Total: 4.06 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -0.98 Total: -3.76 kcal Atomic # 7 Polarization: -46.45 SS G_CDS: -0.32 Total: -46.77 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.08 Total: -13.27 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.24 -9.27 -38.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459260437.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.024 kcal (2) G-P(sol) polarization free energy of solvation -29.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds