Wall clock time and date at job start Tue Mar 31 2020 06:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46501 * 120.00098 * 2 1 4 4 C 1.52995 * 109.46937 * 90.00021 * 3 2 1 5 5 C 1.54263 * 110.03737 * 292.90710 * 4 3 2 6 6 C 1.54957 * 104.16151 * 217.13627 * 5 4 3 7 7 C 1.54884 * 102.77886 * 37.88640 * 6 5 4 8 8 C 1.53879 * 110.03324 * 175.68737 * 4 3 2 9 9 C 1.34771 * 119.99594 * 180.02562 * 2 1 3 10 10 O 1.21593 * 120.00167 * 179.97438 * 9 2 1 11 11 N 1.34780 * 120.00532 * 359.97438 * 9 2 1 12 12 C 1.46496 * 120.00367 * 179.97438 * 11 9 2 13 13 C 1.52993 * 109.47399 * 180.02562 * 12 11 9 14 14 C 1.53005 * 109.47103 * 300.00137 * 13 12 11 15 15 C 1.52997 * 109.47158 * 59.99768 * 13 12 11 16 16 C 1.50700 * 109.47458 * 180.02562 * 13 12 11 17 17 H 1.08002 * 120.00079 * 0.02562 * 16 13 12 18 18 C 1.37880 * 120.00195 * 179.97438 * 16 13 12 19 19 N 1.31514 * 119.99793 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 120.00027 * 179.97438 * 18 16 13 21 21 H 1.48496 * 109.46989 * 90.00259 * 20 18 16 22 22 H 1.48503 * 109.46975 * 210.00419 * 20 18 16 23 23 H 1.48504 * 109.46986 * 330.00098 * 20 18 16 24 24 H 1.09001 * 109.47060 * 270.00243 * 1 2 3 25 25 H 1.09004 * 109.47073 * 29.99732 * 1 2 3 26 26 H 1.09000 * 109.47212 * 149.99814 * 1 2 3 27 27 H 1.09000 * 109.46877 * 210.00112 * 3 2 1 28 28 H 1.09000 * 109.47251 * 330.00217 * 3 2 1 29 29 H 1.09003 * 110.01600 * 54.30286 * 4 3 2 30 30 H 1.09008 * 110.48404 * 335.78661 * 5 4 3 31 31 H 1.09005 * 110.48480 * 98.42499 * 5 4 3 32 32 H 1.09000 * 110.72104 * 279.57246 * 6 5 4 33 33 H 1.09001 * 110.92137 * 156.29310 * 6 5 4 34 34 H 1.08999 * 110.48816 * 203.40060 * 7 6 5 35 35 H 1.09009 * 110.59944 * 80.81467 * 7 6 5 36 36 H 1.08994 * 110.03500 * 238.57392 * 8 4 3 37 37 H 1.09003 * 110.02530 * 0.02562 * 8 4 3 38 38 H 0.97000 * 119.99501 * 0.02562 * 11 9 2 39 39 H 1.09004 * 109.47298 * 300.00557 * 12 11 9 40 40 H 1.09000 * 109.47160 * 60.00094 * 12 11 9 41 41 H 1.08998 * 109.46994 * 59.99826 * 14 13 12 42 42 H 1.08998 * 109.47330 * 179.97438 * 14 13 12 43 43 H 1.09000 * 109.47042 * 300.00276 * 14 13 12 44 44 H 1.08999 * 109.46837 * 60.00807 * 15 13 12 45 45 H 1.09006 * 109.47120 * 180.02562 * 15 13 12 46 46 H 1.08998 * 109.47327 * 300.00412 * 15 13 12 47 47 H 0.97006 * 120.00061 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 6 1.1186 2.0698 2.1288 6 6 1.4692 3.2831 3.0267 7 6 2.4737 4.0760 2.1543 8 6 3.3142 2.9852 1.4590 9 6 2.1388 -1.1672 -0.0005 10 8 3.3548 -1.1673 -0.0010 11 7 1.4650 -2.3344 -0.0005 12 6 2.1974 -3.6032 -0.0017 13 6 1.2032 -4.7660 -0.0021 14 6 0.3240 -4.6858 1.2476 15 6 0.3231 -4.6841 -1.2508 16 6 1.9566 -6.0712 -0.0026 17 1 3.0366 -6.0713 -0.0022 18 6 1.2672 -7.2652 -0.0025 19 7 -0.0479 -7.2652 -0.0024 20 14 2.2012 -8.8830 -0.0039 21 1 2.4497 -9.3122 1.3958 22 1 1.3980 -9.9176 -0.7037 23 1 3.4982 -8.7052 -0.7049 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5139 27 1 3.1500 1.1383 -0.5139 28 1 1.6085 2.0284 -0.5138 29 1 2.9533 0.9142 1.9934 30 1 0.3705 2.3482 1.3864 31 1 0.7643 1.2357 2.7345 32 1 1.9385 2.9540 3.9538 33 1 0.5825 3.8818 3.2356 34 1 3.1074 4.7056 2.7789 35 1 1.9468 4.6803 1.4158 36 1 4.2325 2.8080 2.0186 37 1 3.5502 3.2894 0.4392 38 1 0.4949 -2.3344 -0.0005 39 1 2.8235 -3.6605 -0.8921 40 1 2.8247 -3.6613 0.8878 41 1 -0.2209 -3.7418 1.2484 42 1 -0.3846 -5.5140 1.2471 43 1 0.9510 -4.7441 2.1373 44 1 0.9494 -4.7414 -2.1411 45 1 -0.3856 -5.5124 -1.2509 46 1 -0.2219 -3.7402 -1.2500 47 1 -0.5330 -8.1052 -0.0020 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459260437.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:48 Heat of formation + Delta-G solvation = -64.940138 kcal Electronic energy + Delta-G solvation = -23285.488234 eV Core-core repulsion = 20080.838103 eV Total energy + Delta-G solvation = -3204.650131 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.33013 -39.27525 -38.12582 -36.24028 -34.98375 -32.76970 -31.00264 -29.52086 -27.77923 -27.57235 -27.49601 -26.88700 -24.90591 -21.56666 -21.18480 -20.64115 -20.49380 -19.03540 -17.80604 -17.51599 -16.85002 -16.62540 -16.47616 -15.76800 -15.25834 -15.11623 -14.91220 -14.62938 -14.26519 -14.14234 -14.05678 -13.86088 -13.33593 -13.19738 -13.09941 -12.84537 -12.69410 -12.59061 -12.26450 -12.16475 -12.12468 -11.92671 -11.85556 -11.73600 -11.49174 -11.46478 -11.31425 -11.25759 -11.07689 -10.71277 -10.40074 -10.07493 -9.40193 -8.02516 -6.18124 1.42703 1.45249 1.53739 1.77740 2.20121 2.46081 3.13526 3.21026 3.72779 3.79492 3.84163 4.20881 4.33156 4.41928 4.44005 4.51911 4.55971 4.60743 4.66429 4.69836 4.74022 4.84105 4.86811 4.94030 4.96173 5.00231 5.04585 5.07365 5.11794 5.12675 5.19005 5.28576 5.37564 5.38451 5.46593 5.51257 5.62932 5.66610 5.66826 5.70859 5.99400 6.14382 6.21194 6.43606 6.85686 7.06158 7.49499 7.63405 8.96625 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035661 B = 0.003313 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.987172 B = 8449.964139 C = 8600.743529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.628 5.628 3 C 0.141 3.859 4 C -0.108 4.108 5 C -0.111 4.111 6 C -0.125 4.125 7 C -0.118 4.118 8 C -0.117 4.117 9 C 0.693 3.307 10 O -0.642 6.642 11 N -0.727 5.727 12 C 0.167 3.833 13 C 0.053 3.947 14 C -0.118 4.118 15 C -0.118 4.118 16 C -0.530 4.530 17 H 0.043 0.957 18 C 0.029 3.971 19 N -0.899 5.899 20 Si 0.946 3.054 21 H -0.279 1.279 22 H -0.281 1.281 23 H -0.276 1.276 24 H 0.064 0.936 25 H 0.104 0.896 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.109 0.891 29 H 0.035 0.965 30 H 0.084 0.916 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.404 0.596 39 H 0.033 0.967 40 H 0.031 0.969 41 H 0.034 0.966 42 H 0.064 0.936 43 H 0.016 0.984 44 H 0.017 0.983 45 H 0.064 0.936 46 H 0.035 0.965 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.515 21.683 2.067 22.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.364 5.364 3 C 0.018 3.982 4 C -0.128 4.128 5 C -0.148 4.148 6 C -0.163 4.163 7 C -0.155 4.155 8 C -0.156 4.156 9 C 0.394 3.606 10 O -0.525 6.525 11 N -0.384 5.384 12 C 0.043 3.957 13 C 0.052 3.948 14 C -0.176 4.176 15 C -0.176 4.176 16 C -0.569 4.569 17 H 0.062 0.938 18 C -0.171 4.171 19 N -0.537 5.537 20 Si 0.772 3.228 21 H -0.205 1.205 22 H -0.207 1.207 23 H -0.202 1.202 24 H 0.083 0.917 25 H 0.123 0.877 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.127 0.873 29 H 0.054 0.946 30 H 0.103 0.897 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.243 0.757 39 H 0.051 0.949 40 H 0.050 0.950 41 H 0.053 0.947 42 H 0.083 0.917 43 H 0.035 0.965 44 H 0.036 0.964 45 H 0.083 0.917 46 H 0.054 0.946 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.824 21.535 2.047 21.816 hybrid contribution 0.416 -1.503 0.121 1.564 sum -2.408 20.032 2.168 20.293 Atomic orbital electron populations 1.22020 0.77771 1.04342 1.02824 1.47064 1.07601 1.04055 1.77710 1.21599 0.96938 0.83281 0.96353 1.22138 0.97208 0.97278 0.96145 1.22423 0.96128 0.97584 0.98711 1.22522 0.99516 0.96451 0.97800 1.22340 0.97412 0.96914 0.98842 1.22124 0.97965 0.93984 1.01477 1.16230 0.84990 0.81527 0.77872 1.90836 1.13875 1.87156 1.60605 1.45359 1.10316 1.04276 1.78439 1.21104 0.94421 0.81783 0.98417 1.18347 0.92186 0.90725 0.93531 1.21645 0.99511 0.99688 0.96705 1.21649 0.99526 0.99717 0.96714 1.21273 0.92619 0.91612 1.51396 0.93846 1.25443 0.95669 1.01337 0.94607 1.69902 1.06398 1.26809 1.50625 0.85752 0.78761 0.80241 0.78010 1.20480 1.20658 1.20153 0.91741 0.87744 0.91694 0.92455 0.87290 0.94632 0.89749 0.93219 0.92660 0.90188 0.91293 0.90209 0.92842 0.90751 0.75737 0.94890 0.95033 0.94698 0.91714 0.96522 0.96355 0.91714 0.94648 0.92964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.30 9.11 127.77 1.16 2.46 16 2 N -0.63 -16.57 2.79 -864.89 -2.41 -18.99 16 3 C 0.14 3.17 4.57 86.38 0.40 3.56 16 4 C -0.11 -2.33 3.15 -10.07 -0.03 -2.36 16 5 C -0.11 -1.87 5.20 31.69 0.16 -1.71 16 6 C -0.13 -1.80 6.91 31.91 0.22 -1.58 16 7 C -0.12 -1.55 6.83 31.67 0.22 -1.33 16 8 C -0.12 -2.05 6.46 31.32 0.20 -1.85 16 9 C 0.69 25.80 8.28 179.06 1.48 27.28 16 10 O -0.64 -29.60 15.92 -4.01 -0.06 -29.67 16 11 N -0.73 -27.02 4.82 -478.54 -2.31 -29.32 16 12 C 0.17 7.54 4.50 86.38 0.39 7.93 16 13 C 0.05 2.51 0.50 -52.93 -0.03 2.48 16 14 C -0.12 -5.33 8.08 71.98 0.58 -4.75 16 15 C -0.12 -5.33 8.08 71.98 0.58 -4.75 16 16 C -0.53 -28.66 8.01 25.60 0.21 -28.46 16 17 H 0.04 2.41 7.74 -2.91 -0.02 2.38 16 18 C 0.03 1.56 5.15 84.66 0.44 1.99 16 19 N -0.90 -48.12 9.35 21.45 0.20 -47.92 16 20 Si 0.95 43.05 29.54 68.60 2.03 45.08 16 21 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 22 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 23 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 24 H 0.06 1.05 7.74 -2.39 -0.02 1.03 16 25 H 0.10 1.18 7.89 -2.38 -0.02 1.16 16 26 H 0.06 1.21 6.36 -2.39 -0.02 1.20 16 27 H 0.06 1.58 7.42 -2.39 -0.02 1.56 16 28 H 0.11 1.64 7.77 -2.39 -0.02 1.62 16 29 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.08 1.10 7.32 -2.38 -0.02 1.08 16 31 H 0.05 0.97 8.11 -2.38 -0.02 0.95 16 32 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 36 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.07 1.16 7.67 -2.39 -0.02 1.14 16 38 H 0.40 13.03 3.89 -92.71 -0.36 12.67 16 39 H 0.03 1.59 8.14 -2.38 -0.02 1.57 16 40 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.03 1.32 6.86 -2.39 -0.02 1.31 16 42 H 0.06 3.23 6.07 -2.39 -0.01 3.21 16 43 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.06 3.21 6.07 -2.38 -0.01 3.20 16 46 H 0.03 1.33 6.86 -2.39 -0.02 1.31 16 47 H 0.26 13.41 8.31 -92.70 -0.77 12.64 16 Total: -1.00 -64.87 356.10 3.99 -60.88 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: 0.57 Total: 21.01 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: 5.98 Total: -1.07 kcal Atomic # 7 Polarization: -91.71 SS G_CDS: -4.52 Total: -96.23 kcal Atomic # 8 Polarization: -29.60 SS G_CDS: -0.06 Total: -29.67 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -64.87 3.99 -60.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459260437.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.056 kcal (2) G-P(sol) polarization free energy of solvation -64.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds