Wall clock time and date at job start Tue Mar 31 2020 06:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47136 * 2 1 4 4 C 1.52995 * 109.47051 * 120.00293 * 2 1 3 5 5 N 1.46493 * 109.47511 * 64.99918 * 4 2 1 6 6 C 1.34776 * 120.00401 * 89.99898 * 5 4 2 7 7 O 1.21580 * 120.00534 * 185.98981 * 6 5 4 8 8 N 1.34783 * 119.99872 * 5.98023 * 6 5 4 9 9 C 1.46492 * 120.00202 * 174.70981 * 8 6 5 10 10 C 1.53000 * 109.47605 * 180.27968 * 9 8 6 11 11 C 1.53003 * 109.46868 * 300.00573 * 10 9 8 12 12 C 1.53003 * 109.46837 * 59.99655 * 10 9 8 13 13 C 1.50695 * 109.47711 * 179.97438 * 10 9 8 14 14 H 1.08000 * 119.99581 * 4.71908 * 13 10 9 15 15 C 1.37870 * 120.00046 * 184.71389 * 13 10 9 16 16 N 1.31508 * 120.00350 * 354.80688 * 15 13 10 17 17 Si 1.86808 * 119.99903 * 174.80403 * 15 13 10 18 18 H 1.48502 * 109.46835 * 95.00113 * 17 15 13 19 19 H 1.48493 * 109.47041 * 214.99950 * 17 15 13 20 20 H 1.48500 * 109.46744 * 335.00241 * 17 15 13 21 21 C 1.46499 * 119.99885 * 269.99699 * 5 4 2 22 22 C 1.53005 * 117.49892 * 196.55151 * 21 5 4 23 23 C 1.52999 * 60.00170 * 252.51231 * 22 21 5 24 24 H 1.09000 * 109.46487 * 299.99602 * 1 2 3 25 25 H 1.08998 * 109.46933 * 59.99932 * 1 2 3 26 26 H 1.09000 * 109.47008 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46841 * 240.00360 * 2 1 3 28 28 H 1.09004 * 109.46988 * 180.02562 * 3 2 1 29 29 H 1.09009 * 109.47035 * 300.00337 * 3 2 1 30 30 H 1.08997 * 109.47690 * 60.00313 * 3 2 1 31 31 H 1.08995 * 109.47079 * 304.99406 * 4 2 1 32 32 H 1.09008 * 109.46793 * 185.00039 * 4 2 1 33 33 H 0.97008 * 119.99719 * 354.98895 * 8 6 5 34 34 H 1.09003 * 109.46941 * 300.27749 * 9 8 6 35 35 H 1.09003 * 109.47350 * 60.28049 * 9 8 6 36 36 H 1.08996 * 109.47344 * 64.96195 * 11 10 9 37 37 H 1.08994 * 109.47227 * 184.97167 * 11 10 9 38 38 H 1.09001 * 109.46412 * 304.96392 * 11 10 9 39 39 H 1.09003 * 109.47252 * 60.00498 * 12 10 9 40 40 H 1.09003 * 109.47060 * 180.02562 * 12 10 9 41 41 H 1.08997 * 109.47597 * 300.00628 * 12 10 9 42 42 H 0.97003 * 120.00270 * 180.02562 * 16 15 13 43 43 H 1.08995 * 115.55059 * 342.26767 * 21 5 4 44 44 H 1.08998 * 117.49617 * 0.02562 * 22 21 5 45 45 H 1.09000 * 117.49505 * 145.02619 * 22 21 5 46 46 H 1.08997 * 117.49972 * 252.50967 * 23 22 21 47 47 H 1.09002 * 117.52057 * 107.47935 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 -2.1328 1.1905 6 6 2.4715 -3.0331 0.6115 7 8 2.1045 -4.1829 0.4650 8 7 3.6974 -2.6587 0.1947 9 6 4.6307 -3.6595 -0.3280 10 6 5.9425 -2.9773 -0.7214 11 6 5.6674 -1.9251 -1.7976 12 6 6.5545 -2.3019 0.5075 13 6 6.9028 -4.0070 -1.2586 14 1 6.5819 -5.0304 -1.3854 15 6 8.1910 -3.6424 -1.5883 16 7 8.5519 -2.3791 -1.5313 17 14 9.4237 -4.9431 -2.1159 18 1 9.4470 -5.0306 -3.5982 19 1 10.7742 -4.5750 -1.6204 20 1 9.0295 -6.2576 -1.5486 21 6 0.3747 -2.5659 1.7613 22 6 0.1891 -4.0617 2.0241 23 6 -0.5549 -3.3900 0.8681 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8901 28 1 3.1301 1.4424 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6768 1.9564 0.8900 31 1 1.6055 -0.2618 2.1369 32 1 3.1264 -0.6443 1.2950 33 1 3.9631 -1.7270 0.2447 34 1 4.8267 -4.4090 0.4387 35 1 4.1947 -4.1407 -1.2035 36 1 5.0439 -1.1340 -1.3813 37 1 6.6110 -1.5014 -2.1410 38 1 5.1512 -2.3907 -2.6372 39 1 6.7505 -3.0514 1.2742 40 1 7.4889 -1.8155 0.2272 41 1 5.8601 -1.5572 0.8965 42 1 9.4581 -2.1226 -1.7637 43 1 -0.0870 -1.8703 2.4620 44 1 1.0179 -4.7235 1.7727 45 1 -0.3948 -4.3505 2.8981 46 1 -1.6281 -3.2370 0.9816 47 1 -0.2159 -3.6096 -0.1443 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459262000.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:27 Heat of formation + Delta-G solvation = -5.060153 kcal Electronic energy + Delta-G solvation = -23959.895157 eV Core-core repulsion = 20757.841617 eV Total energy + Delta-G solvation = -3202.053540 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.37228 -37.27859 -36.49188 -35.58860 -33.38099 -32.39926 -30.55068 -27.25037 -26.11109 -25.71422 -25.60334 -24.88369 -22.43083 -22.16696 -20.44845 -19.56978 -18.74235 -17.40806 -16.45728 -15.84837 -15.28404 -14.96577 -14.78625 -14.63355 -14.14899 -13.95756 -13.48429 -13.11367 -12.91975 -12.78171 -12.52624 -12.35881 -12.18767 -11.92248 -11.58668 -11.44900 -11.18165 -11.15220 -11.08549 -10.83236 -10.80984 -10.67806 -10.61681 -10.37132 -10.18464 -10.17218 -9.61891 -9.37130 -9.20700 -8.80441 -8.44011 -8.33131 -7.98956 -6.01328 -4.10599 2.91289 3.28840 3.36424 3.41356 3.50635 4.09403 4.30799 4.44181 4.74555 4.82300 4.95923 5.02497 5.10589 5.25324 5.27434 5.33688 5.48074 5.56475 5.64968 5.67441 5.78039 5.86410 5.88490 6.04448 6.16855 6.22772 6.25282 6.28308 6.38300 6.51766 6.57491 6.78148 6.83794 6.91619 6.96357 7.04331 7.18201 7.28844 7.41184 7.56202 7.71107 8.02534 8.13878 8.39611 8.45551 8.89109 9.07182 9.54876 10.99978 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021961 B = 0.004574 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.710106 B = 6120.547322 C = 7000.675279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C -0.146 4.146 4 C 0.119 3.881 5 N -0.606 5.606 6 C 0.701 3.299 7 O -0.590 6.590 8 N -0.732 5.732 9 C 0.149 3.851 10 C 0.056 3.944 11 C -0.128 4.128 12 C -0.131 4.131 13 C -0.504 4.504 14 H 0.057 0.943 15 C 0.066 3.934 16 N -0.885 5.885 17 Si 0.892 3.108 18 H -0.282 1.282 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.094 3.906 22 C -0.194 4.194 23 C -0.190 4.190 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.393 0.607 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.005 0.995 37 H 0.083 0.917 38 H 0.025 0.975 39 H 0.026 0.974 40 H 0.088 0.912 41 H 0.003 0.997 42 H 0.259 0.741 43 H 0.122 0.878 44 H 0.140 0.860 45 H 0.082 0.918 46 H 0.088 0.912 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.357 7.319 6.027 17.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.137 4.137 3 C -0.204 4.204 4 C -0.005 4.005 5 N -0.341 5.341 6 C 0.403 3.597 7 O -0.470 6.470 8 N -0.388 5.388 9 C 0.026 3.974 10 C 0.055 3.945 11 C -0.185 4.185 12 C -0.189 4.189 13 C -0.543 4.543 14 H 0.076 0.924 15 C -0.135 4.135 16 N -0.524 5.524 17 Si 0.720 3.280 18 H -0.208 1.208 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.012 4.012 22 C -0.231 4.231 23 C -0.229 4.229 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.230 0.770 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.024 0.976 37 H 0.102 0.898 38 H 0.044 0.956 39 H 0.045 0.955 40 H 0.107 0.893 41 H 0.022 0.978 42 H 0.069 0.931 43 H 0.140 0.860 44 H 0.158 0.842 45 H 0.100 0.900 46 H 0.106 0.894 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -14.389 6.584 5.894 16.886 hybrid contribution 0.765 -0.092 -0.302 0.827 sum -13.624 6.493 5.593 16.095 Atomic orbital electron populations 1.21872 0.94890 1.02546 1.01114 1.21595 0.96754 0.96378 0.99015 1.21792 1.01462 0.95351 1.01803 1.21593 1.00119 0.80642 0.98155 1.46486 1.19123 1.06917 1.61580 1.16054 0.80850 0.84288 0.78477 1.90710 1.75410 1.18486 1.62348 1.45722 1.13312 1.12672 1.67067 1.21588 0.89046 0.89671 0.97050 1.18358 0.89449 0.93902 0.92749 1.21808 1.01115 0.97213 0.98395 1.21828 1.02023 0.98082 0.96924 1.20981 0.95683 0.94892 1.42710 0.92427 1.24868 0.98151 0.95261 0.95199 1.69808 1.18664 1.15154 1.48773 0.86578 0.80665 0.82106 0.78661 1.20829 1.21228 1.19835 1.21339 0.85516 0.94351 0.99964 1.23900 1.04535 0.95979 0.98703 1.23244 0.96769 1.05289 0.97566 0.93083 0.93090 0.91606 0.90730 0.92188 0.92435 0.92687 0.90379 0.90577 0.77006 0.93048 0.92975 0.97591 0.89837 0.95623 0.95474 0.89325 0.97757 0.93054 0.86032 0.84227 0.89950 0.89405 0.88508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.76 37.16 0.33 -1.10 16 2 C -0.12 -1.25 3.13 -90.62 -0.28 -1.54 16 3 C -0.15 -1.33 9.19 37.16 0.34 -0.99 16 4 C 0.12 1.33 4.79 -4.05 -0.02 1.31 16 5 N -0.61 -8.47 2.66 -171.80 -0.46 -8.93 16 6 C 0.70 12.66 8.06 -86.91 -0.70 11.95 16 7 O -0.59 -12.32 12.09 5.29 0.06 -12.26 16 8 N -0.73 -13.45 4.86 -65.23 -0.32 -13.77 16 9 C 0.15 3.23 4.51 -4.05 -0.02 3.21 16 10 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 11 C -0.13 -2.88 8.10 37.16 0.30 -2.58 16 12 C -0.13 -2.96 8.02 37.16 0.30 -2.66 16 13 C -0.50 -13.22 8.01 -34.45 -0.28 -13.50 16 14 H 0.06 1.53 7.75 -52.49 -0.41 1.13 16 15 C 0.07 1.74 5.12 -17.82 -0.09 1.65 16 16 N -0.89 -23.51 9.36 55.43 0.52 -23.00 16 17 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 C 0.09 1.16 5.06 -67.93 -0.34 0.81 16 22 C -0.19 -2.65 9.63 -26.73 -0.26 -2.91 16 23 C -0.19 -2.42 8.78 -26.73 -0.23 -2.65 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.71 5.45 -51.93 -0.28 0.43 16 27 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.51 8.14 -51.92 -0.42 0.08 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.71 8.03 -51.93 -0.42 0.29 16 32 H 0.08 0.89 6.21 -51.92 -0.32 0.57 16 33 H 0.39 6.64 3.88 -40.82 -0.16 6.49 16 34 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.01 0.10 7.01 -51.93 -0.36 -0.26 16 37 H 0.08 2.09 6.16 -51.93 -0.32 1.77 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.09 2.21 5.91 -51.93 -0.31 1.90 16 41 H 0.00 0.07 6.86 -51.93 -0.36 -0.29 16 42 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 43 H 0.12 1.17 8.09 -51.93 -0.42 0.75 16 44 H 0.14 2.44 5.23 -52.09 -0.27 2.17 16 45 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 46 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.10 1.50 7.58 -51.93 -0.39 1.11 16 LS Contribution 355.67 15.07 5.36 5.36 Total: -1.00 -27.83 355.67 -9.12 -36.95 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -8.23 Total: 7.69 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: -1.04 Total: -7.76 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: -0.26 Total: -45.69 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.06 Total: -12.26 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -27.83 -9.12 -36.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459262000.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.889 kcal (2) G-P(sol) polarization free energy of solvation -27.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds