Wall clock time and date at job start Tue Mar 31 2020 06:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47136 * 2 1 4 4 C 1.52995 * 109.47051 * 120.00293 * 2 1 3 5 5 N 1.46493 * 109.47511 * 64.99918 * 4 2 1 6 6 C 1.34776 * 120.00401 * 89.99898 * 5 4 2 7 7 O 1.21580 * 120.00534 * 185.98981 * 6 5 4 8 8 N 1.34783 * 119.99872 * 5.98023 * 6 5 4 9 9 C 1.46492 * 120.00202 * 174.70981 * 8 6 5 10 10 C 1.53000 * 109.47605 * 180.27968 * 9 8 6 11 11 C 1.53003 * 109.46868 * 300.00573 * 10 9 8 12 12 C 1.53003 * 109.46837 * 59.99655 * 10 9 8 13 13 C 1.50695 * 109.47711 * 179.97438 * 10 9 8 14 14 H 1.08000 * 119.99581 * 4.71908 * 13 10 9 15 15 C 1.37870 * 120.00046 * 184.71389 * 13 10 9 16 16 N 1.31508 * 120.00350 * 354.80688 * 15 13 10 17 17 Si 1.86808 * 119.99903 * 174.80403 * 15 13 10 18 18 H 1.48502 * 109.46835 * 95.00113 * 17 15 13 19 19 H 1.48493 * 109.47041 * 214.99950 * 17 15 13 20 20 H 1.48500 * 109.46744 * 335.00241 * 17 15 13 21 21 C 1.46499 * 119.99885 * 269.99699 * 5 4 2 22 22 C 1.53005 * 117.49892 * 196.55151 * 21 5 4 23 23 C 1.52999 * 60.00170 * 252.51231 * 22 21 5 24 24 H 1.09000 * 109.46487 * 299.99602 * 1 2 3 25 25 H 1.08998 * 109.46933 * 59.99932 * 1 2 3 26 26 H 1.09000 * 109.47008 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46841 * 240.00360 * 2 1 3 28 28 H 1.09004 * 109.46988 * 180.02562 * 3 2 1 29 29 H 1.09009 * 109.47035 * 300.00337 * 3 2 1 30 30 H 1.08997 * 109.47690 * 60.00313 * 3 2 1 31 31 H 1.08995 * 109.47079 * 304.99406 * 4 2 1 32 32 H 1.09008 * 109.46793 * 185.00039 * 4 2 1 33 33 H 0.97008 * 119.99719 * 354.98895 * 8 6 5 34 34 H 1.09003 * 109.46941 * 300.27749 * 9 8 6 35 35 H 1.09003 * 109.47350 * 60.28049 * 9 8 6 36 36 H 1.08996 * 109.47344 * 64.96195 * 11 10 9 37 37 H 1.08994 * 109.47227 * 184.97167 * 11 10 9 38 38 H 1.09001 * 109.46412 * 304.96392 * 11 10 9 39 39 H 1.09003 * 109.47252 * 60.00498 * 12 10 9 40 40 H 1.09003 * 109.47060 * 180.02562 * 12 10 9 41 41 H 1.08997 * 109.47597 * 300.00628 * 12 10 9 42 42 H 0.97003 * 120.00270 * 180.02562 * 16 15 13 43 43 H 1.08995 * 115.55059 * 342.26767 * 21 5 4 44 44 H 1.08998 * 117.49617 * 0.02562 * 22 21 5 45 45 H 1.09000 * 117.49505 * 145.02619 * 22 21 5 46 46 H 1.08997 * 117.49972 * 252.50967 * 23 22 21 47 47 H 1.09002 * 117.52057 * 107.47935 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 -2.1328 1.1905 6 6 2.4715 -3.0331 0.6115 7 8 2.1045 -4.1829 0.4650 8 7 3.6974 -2.6587 0.1947 9 6 4.6307 -3.6595 -0.3280 10 6 5.9425 -2.9773 -0.7214 11 6 5.6674 -1.9251 -1.7976 12 6 6.5545 -2.3019 0.5075 13 6 6.9028 -4.0070 -1.2586 14 1 6.5819 -5.0304 -1.3854 15 6 8.1910 -3.6424 -1.5883 16 7 8.5519 -2.3791 -1.5313 17 14 9.4237 -4.9431 -2.1159 18 1 9.4470 -5.0306 -3.5982 19 1 10.7742 -4.5750 -1.6204 20 1 9.0295 -6.2576 -1.5486 21 6 0.3747 -2.5659 1.7613 22 6 0.1891 -4.0617 2.0241 23 6 -0.5549 -3.3900 0.8681 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8901 28 1 3.1301 1.4424 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6768 1.9564 0.8900 31 1 1.6055 -0.2618 2.1369 32 1 3.1264 -0.6443 1.2950 33 1 3.9631 -1.7270 0.2447 34 1 4.8267 -4.4090 0.4387 35 1 4.1947 -4.1407 -1.2035 36 1 5.0439 -1.1340 -1.3813 37 1 6.6110 -1.5014 -2.1410 38 1 5.1512 -2.3907 -2.6372 39 1 6.7505 -3.0514 1.2742 40 1 7.4889 -1.8155 0.2272 41 1 5.8601 -1.5572 0.8965 42 1 9.4581 -2.1226 -1.7637 43 1 -0.0870 -1.8703 2.4620 44 1 1.0179 -4.7235 1.7727 45 1 -0.3948 -4.3505 2.8981 46 1 -1.6281 -3.2370 0.9816 47 1 -0.2159 -3.6096 -0.1443 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459262000.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:26 Heat of formation + Delta-G solvation = -19.054854 kcal Electronic energy + Delta-G solvation = -23960.502013 eV Core-core repulsion = 20757.841617 eV Total energy + Delta-G solvation = -3202.660396 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.66804 -38.77442 -37.71222 -36.87681 -34.89026 -33.78096 -32.28553 -27.99734 -27.58125 -27.50162 -27.13741 -26.56297 -23.68068 -23.20838 -21.35527 -20.92521 -20.57152 -18.65130 -17.78575 -17.63208 -16.64382 -16.55708 -16.20279 -15.73216 -15.32211 -15.16161 -14.91935 -14.72511 -14.38096 -14.09319 -13.99199 -13.46287 -13.24542 -13.11470 -13.02519 -12.77307 -12.69661 -12.63383 -12.56530 -12.31000 -12.12427 -12.09768 -11.97454 -11.63571 -11.51620 -11.47839 -11.21488 -11.16785 -10.76974 -10.65805 -10.36679 -9.93382 -9.20108 -8.02562 -6.17602 1.42184 1.45486 1.54310 1.70031 2.11808 2.45911 2.97049 3.13282 3.20904 3.87673 3.96292 4.03745 4.10753 4.17528 4.27023 4.41999 4.52107 4.54140 4.64109 4.69353 4.72801 4.84373 4.88248 4.90029 4.97432 5.03790 5.06870 5.07971 5.12240 5.15476 5.18449 5.31613 5.37436 5.43585 5.49016 5.50672 5.64838 5.67254 5.69459 5.87061 5.98396 6.13620 6.21181 6.43937 6.85850 7.05546 7.49742 7.65448 8.96512 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021961 B = 0.004574 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.710106 B = 6120.547322 C = 7000.675279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 C -0.142 4.142 4 C 0.113 3.887 5 N -0.598 5.598 6 C 0.694 3.306 7 O -0.624 6.624 8 N -0.728 5.728 9 C 0.169 3.831 10 C 0.053 3.947 11 C -0.115 4.115 12 C -0.119 4.119 13 C -0.528 4.528 14 H 0.043 0.957 15 C 0.030 3.970 16 N -0.897 5.897 17 Si 0.944 3.056 18 H -0.280 1.280 19 H -0.281 1.281 20 H -0.276 1.276 21 C 0.100 3.900 22 C -0.208 4.208 23 C -0.184 4.184 24 H 0.073 0.927 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.043 0.957 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.113 0.887 32 H 0.070 0.930 33 H 0.402 0.598 34 H 0.034 0.966 35 H 0.031 0.969 36 H 0.032 0.968 37 H 0.061 0.939 38 H 0.016 0.984 39 H 0.017 0.983 40 H 0.067 0.933 41 H 0.032 0.968 42 H 0.261 0.739 43 H 0.166 0.834 44 H 0.098 0.902 45 H 0.109 0.891 46 H 0.120 0.880 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.805 9.224 7.441 19.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.134 4.134 3 C -0.200 4.200 4 C -0.009 4.009 5 N -0.332 5.332 6 C 0.396 3.604 7 O -0.506 6.506 8 N -0.385 5.385 9 C 0.044 3.956 10 C 0.052 3.948 11 C -0.173 4.173 12 C -0.177 4.177 13 C -0.567 4.567 14 H 0.061 0.939 15 C -0.170 4.170 16 N -0.536 5.536 17 Si 0.771 3.229 18 H -0.206 1.206 19 H -0.206 1.206 20 H -0.201 1.201 21 C -0.005 4.005 22 C -0.246 4.246 23 C -0.223 4.223 24 H 0.092 0.908 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.131 0.869 32 H 0.089 0.911 33 H 0.240 0.760 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.079 0.921 38 H 0.035 0.965 39 H 0.036 0.964 40 H 0.086 0.914 41 H 0.051 0.949 42 H 0.070 0.930 43 H 0.183 0.817 44 H 0.116 0.884 45 H 0.128 0.872 46 H 0.138 0.862 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.857 8.535 7.320 19.439 hybrid contribution 1.162 -0.685 -0.744 1.541 sum -14.694 7.849 6.577 17.911 Atomic orbital electron populations 1.21842 0.93820 1.02043 1.02358 1.21534 0.97623 0.96961 0.97295 1.21763 1.01049 0.94262 1.02938 1.21865 1.00210 0.78913 0.99916 1.46560 1.18987 1.07511 1.60141 1.16275 0.80988 0.84496 0.78630 1.90727 1.76041 1.20287 1.63528 1.45448 1.13320 1.12313 1.67380 1.21100 0.88965 0.89812 0.95707 1.18349 0.89613 0.93637 0.93208 1.21629 1.00233 0.97510 0.97950 1.21656 1.01603 0.98192 0.96259 1.21237 0.96887 0.95020 1.43539 0.93875 1.25427 0.99370 0.96870 0.95315 1.69903 1.18900 1.16004 1.48797 0.85760 0.78923 0.79977 0.78233 1.20599 1.20626 1.20137 1.21783 0.84433 0.94318 0.99920 1.23757 1.04097 0.96470 1.00228 1.23180 0.98465 1.05235 0.95438 0.90759 0.92985 0.92916 0.93885 0.92836 0.92274 0.90606 0.86888 0.91129 0.76011 0.94767 0.95048 0.94906 0.92058 0.96474 0.96370 0.91408 0.94876 0.92975 0.81734 0.88403 0.87247 0.86237 0.92040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 8.76 71.98 0.63 -1.71 16 2 C -0.11 -2.17 3.13 -10.79 -0.03 -2.20 16 3 C -0.14 -2.19 9.19 71.98 0.66 -1.52 16 4 C 0.11 2.21 4.79 86.38 0.41 2.62 16 5 N -0.60 -15.73 2.66 -815.73 -2.17 -17.90 16 6 C 0.69 25.19 8.06 179.05 1.44 26.64 16 7 O -0.62 -27.06 12.09 -3.97 -0.05 -27.11 16 8 N -0.73 -26.85 4.86 -478.54 -2.33 -29.17 16 9 C 0.17 7.52 4.51 86.38 0.39 7.91 16 10 C 0.05 2.49 0.50 -52.93 -0.03 2.46 16 11 C -0.12 -5.24 8.10 71.98 0.58 -4.65 16 12 C -0.12 -5.38 8.02 71.98 0.58 -4.80 16 13 C -0.53 -28.36 8.01 25.60 0.21 -28.16 16 14 H 0.04 2.38 7.75 -2.91 -0.02 2.36 16 15 C 0.03 1.59 5.12 84.65 0.43 2.03 16 16 N -0.90 -47.89 9.36 21.44 0.20 -47.69 16 17 Si 0.94 42.88 29.54 68.60 2.03 44.91 16 18 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 19 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 21 C 0.10 2.19 5.06 45.00 0.23 2.42 16 22 C -0.21 -5.46 9.63 30.60 0.29 -5.17 16 23 C -0.18 -4.43 8.78 30.60 0.27 -4.17 16 24 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.05 1.01 5.45 -2.39 -0.01 0.99 16 27 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 28 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.11 1.48 8.03 -2.39 -0.02 1.46 16 32 H 0.07 1.47 6.21 -2.38 -0.01 1.46 16 33 H 0.40 13.21 3.88 -92.70 -0.36 12.85 16 34 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.03 1.26 7.01 -2.39 -0.02 1.25 16 37 H 0.06 3.07 6.16 -2.39 -0.01 3.06 16 38 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.07 3.37 5.91 -2.39 -0.01 3.36 16 41 H 0.03 1.25 6.86 -2.39 -0.02 1.24 16 42 H 0.26 13.36 8.31 -92.71 -0.77 12.59 16 43 H 0.17 2.27 8.09 -2.39 -0.02 2.25 16 44 H 0.10 3.53 5.23 -4.95 -0.03 3.50 16 45 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 46 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 47 H 0.06 1.94 7.58 -2.39 -0.02 1.92 16 Total: -1.00 -62.52 355.67 4.31 -58.21 By element: Atomic # 1 Polarization: 26.51 SS G_CDS: 0.56 Total: 27.07 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: 6.07 Total: -8.31 kcal Atomic # 7 Polarization: -90.46 SS G_CDS: -4.30 Total: -94.76 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.05 Total: -27.11 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -62.52 4.31 -58.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459262000.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.151 kcal (2) G-P(sol) polarization free energy of solvation -62.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds