Wall clock time and date at job start Tue Mar 31 2020 05:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46844 * 111.00297 * 2 1 4 4 C 1.53038 * 109.52314 * 174.15912 * 3 2 1 5 5 C 1.53123 * 109.27669 * 59.18318 * 4 3 2 6 6 C 1.50699 * 109.52146 * 182.43928 * 5 4 3 7 7 O 1.21282 * 119.99975 * 119.68157 * 6 5 4 8 8 N 1.34779 * 120.00057 * 299.68286 * 6 5 4 9 9 C 1.46496 * 119.99955 * 180.02562 * 8 6 5 10 10 C 1.53008 * 109.47012 * 180.02562 * 9 8 6 11 11 C 1.53005 * 109.46424 * 299.99330 * 10 9 8 12 12 C 1.52998 * 109.47458 * 59.99353 * 10 9 8 13 13 C 1.52994 * 109.46965 * 179.97438 * 10 9 8 14 14 C 1.50704 * 109.47151 * 179.97438 * 13 10 9 15 15 H 1.07994 * 119.99522 * 359.97438 * 14 13 10 16 16 C 1.37879 * 120.00199 * 180.02562 * 14 13 10 17 17 N 1.31516 * 120.00035 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00034 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47258 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47357 * 119.99607 * 18 16 14 21 21 H 1.48506 * 109.47177 * 239.99640 * 18 16 14 22 22 C 1.53120 * 109.15831 * 302.34448 * 5 4 3 23 23 C 1.46844 * 110.99853 * 235.79163 * 2 1 3 24 24 H 1.09002 * 109.47401 * 184.20627 * 1 2 3 25 25 H 1.09001 * 109.46874 * 64.20639 * 1 2 3 26 26 H 1.09004 * 109.46970 * 304.20773 * 1 2 3 27 27 H 1.08995 * 109.46425 * 294.18075 * 3 2 1 28 28 H 1.09008 * 109.45740 * 54.14720 * 3 2 1 29 29 H 1.09000 * 109.50747 * 299.24167 * 4 3 2 30 30 H 1.08999 * 109.53552 * 179.14132 * 4 3 2 31 31 H 1.08996 * 109.52209 * 62.25174 * 5 4 3 32 32 H 0.97002 * 120.00174 * 359.97438 * 8 6 5 33 33 H 1.09003 * 109.47159 * 299.99514 * 9 8 6 34 34 H 1.08999 * 109.47465 * 59.99950 * 9 8 6 35 35 H 1.08995 * 109.46926 * 60.00666 * 11 10 9 36 36 H 1.09002 * 109.46381 * 180.02562 * 11 10 9 37 37 H 1.08999 * 109.47543 * 300.00060 * 11 10 9 38 38 H 1.09007 * 109.46815 * 60.00164 * 12 10 9 39 39 H 1.09001 * 109.46638 * 180.02562 * 12 10 9 40 40 H 1.09003 * 109.47008 * 300.00582 * 12 10 9 41 41 H 1.09003 * 109.47214 * 299.99197 * 13 10 9 42 42 H 1.08999 * 109.47456 * 59.99662 * 13 10 9 43 43 H 0.96996 * 120.00043 * 179.97438 * 17 16 14 44 44 H 1.08995 * 109.50416 * 297.70785 * 22 5 4 45 45 H 1.09001 * 109.50010 * 177.59436 * 22 5 4 46 46 H 1.09007 * 109.46691 * 305.86028 * 23 2 1 47 47 H 1.09003 * 109.46730 * 65.82297 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3340 0.1468 5 6 4.1188 0.5368 -1.0144 6 6 5.6133 0.4461 -0.8432 7 8 6.1468 -0.6378 -0.7367 8 7 6.3571 1.5696 -0.8083 9 6 7.8099 1.4814 -0.6424 10 6 8.4089 2.8893 -0.6353 11 6 8.0881 3.5865 -1.9589 12 6 7.8111 3.6921 0.5220 13 6 9.9261 2.7972 -0.4613 14 6 10.5161 4.1839 -0.4549 15 1 9.8732 5.0447 -0.5644 16 6 11.8768 4.3536 -0.3104 17 7 12.6597 3.3052 -0.1775 18 14 12.6080 6.0724 -0.3017 19 1 11.5229 7.0728 -0.4658 20 1 13.3069 6.3066 0.9874 21 1 13.5756 6.2044 -1.4205 22 6 3.5181 -0.8716 -1.0209 23 6 1.9952 -0.7707 -1.1337 24 1 -0.3634 -1.0249 0.0754 25 1 -0.3633 0.4472 -0.9253 26 1 -0.3633 0.5778 0.8499 27 1 1.7325 1.8608 -0.9375 28 1 1.5635 1.9256 0.8331 29 1 3.7815 0.8566 1.0906 30 1 3.9106 2.3509 0.1315 31 1 3.8888 1.0354 -1.9560 32 1 5.9304 2.4366 -0.8938 33 1 8.0384 0.9850 0.3008 34 1 8.2357 0.9092 -1.4666 35 1 7.0072 3.6522 -2.0824 36 1 8.5152 4.5894 -1.9540 37 1 8.5140 3.0147 -2.7834 38 1 8.0396 3.1952 1.4649 39 1 8.2375 4.6952 0.5266 40 1 6.7301 3.7576 0.3984 41 1 10.1542 2.3006 0.4818 42 1 10.3523 2.2252 -1.2855 43 1 13.6170 3.4246 -0.0762 44 1 3.7813 -1.3838 -0.0955 45 1 3.9098 -1.4303 -1.8709 46 1 1.5633 -1.7715 -1.1244 47 1 1.7324 -0.2708 -2.0661 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000489837831.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:14 Heat of formation + Delta-G solvation = -63.603195 kcal Electronic energy + Delta-G solvation = -22935.853999 eV Core-core repulsion = 19731.261843 eV Total energy + Delta-G solvation = -3204.592157 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.21209 -38.53054 -37.03882 -33.87505 -33.44829 -32.05034 -31.04685 -27.82967 -27.03339 -26.52011 -25.92913 -23.69109 -23.36068 -22.56881 -20.56617 -19.71105 -18.31532 -16.94565 -16.32996 -16.06595 -15.46423 -15.29129 -15.07842 -14.75868 -14.51024 -14.10846 -13.82671 -13.48471 -13.14492 -13.03529 -12.76038 -12.72376 -12.61384 -12.09028 -12.07241 -11.91615 -11.47921 -11.35128 -11.15567 -11.03272 -10.86298 -10.83885 -10.68078 -10.65153 -10.40287 -10.24358 -9.88248 -9.63647 -9.14154 -8.91279 -8.68889 -8.63889 -8.36710 -6.00482 -4.01744 2.84837 3.29552 3.37559 3.39576 3.46638 3.62057 4.44444 4.46803 4.53645 4.70038 4.85544 5.01109 5.06267 5.13836 5.20532 5.29449 5.35012 5.35248 5.44987 5.53219 5.53816 5.54633 5.62890 5.72072 5.75130 5.83553 5.98207 6.16414 6.20300 6.23022 6.30254 6.39418 6.58162 6.62203 6.74566 6.77263 6.78161 7.05847 7.06846 7.12781 7.63980 7.76155 7.78336 7.98451 8.39738 8.47850 9.03351 9.61441 11.11046 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.040029 B = 0.003018 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.316834 B = 9275.803244 C = 9665.138690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.545 5.545 3 C 0.058 3.942 4 C -0.108 4.108 5 C -0.109 4.109 6 C 0.512 3.488 7 O -0.545 6.545 8 N -0.721 5.721 9 C 0.128 3.872 10 C -0.072 4.072 11 C -0.127 4.127 12 C -0.126 4.126 13 C 0.035 3.965 14 C -0.510 4.510 15 H 0.060 0.940 16 C 0.055 3.945 17 N -0.894 5.894 18 Si 0.889 3.111 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.096 4.096 23 C 0.056 3.944 24 H 0.068 0.932 25 H 0.024 0.976 26 H 0.068 0.932 27 H 0.035 0.965 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.397 0.603 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.028 0.972 36 H 0.067 0.933 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.066 0.934 40 H 0.028 0.972 41 H 0.018 0.982 42 H 0.018 0.982 43 H 0.259 0.741 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.077 0.923 47 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.383 -3.352 -1.658 23.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.270 5.270 3 C -0.070 4.070 4 C -0.146 4.146 5 C -0.130 4.130 6 C 0.297 3.703 7 O -0.422 6.422 8 N -0.373 5.373 9 C 0.005 3.995 10 C -0.073 4.073 11 C -0.184 4.184 12 C -0.184 4.184 13 C -0.002 4.002 14 C -0.548 4.548 15 H 0.078 0.922 16 C -0.146 4.146 17 N -0.534 5.534 18 Si 0.717 3.283 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.134 4.134 23 C -0.072 4.072 24 H 0.087 0.913 25 H 0.042 0.958 26 H 0.086 0.914 27 H 0.053 0.947 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.109 0.891 32 H 0.232 0.768 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.047 0.953 36 H 0.086 0.914 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.085 0.915 40 H 0.047 0.953 41 H 0.037 0.963 42 H 0.036 0.964 43 H 0.069 0.931 44 H 0.099 0.901 45 H 0.093 0.907 46 H 0.096 0.904 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -22.638 -4.404 -1.128 23.090 hybrid contribution 0.122 1.766 -0.806 1.945 sum -22.517 -2.638 -1.934 22.753 Atomic orbital electron populations 1.22350 0.87267 1.02279 1.00398 1.61918 1.07520 1.13818 1.43695 1.22086 0.95122 0.89133 1.00692 1.21589 0.94397 1.00023 0.98624 1.21394 0.92158 0.99017 1.00473 1.20514 0.88904 0.84366 0.76478 1.90691 1.73960 1.27835 1.49725 1.46228 1.08924 1.08554 1.73545 1.21618 0.77837 0.98640 1.01437 1.20897 0.99804 0.91444 0.95112 1.21759 0.97906 1.01954 0.96783 1.21757 0.97211 1.01544 0.97857 1.19099 0.86297 0.97480 0.97354 1.21218 0.91879 0.92431 1.49311 0.92216 1.25021 0.97469 0.96482 0.95585 1.69975 1.04317 1.28896 1.50191 0.86594 0.79238 0.84949 0.77543 1.19812 1.21125 1.21145 1.21393 0.92921 0.95009 1.04082 1.22144 0.95656 0.98300 0.91109 0.91329 0.95774 0.91358 0.94708 0.90351 0.90272 0.90812 0.89130 0.76780 0.91875 0.91927 0.95308 0.91440 0.93399 0.93353 0.91460 0.95291 0.96329 0.96362 0.93089 0.90114 0.90733 0.90429 0.94898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.59 60.07 0.58 0.75 16 2 N -0.54 -4.84 4.91 -242.96 -1.19 -6.04 16 3 C 0.06 0.47 5.46 -3.83 -0.02 0.45 16 4 C -0.11 -1.01 5.26 -26.65 -0.14 -1.15 16 5 C -0.11 -1.17 2.59 -91.65 -0.24 -1.41 16 6 C 0.51 7.55 7.16 -10.99 -0.08 7.47 16 7 O -0.54 -10.28 15.98 5.56 0.09 -10.19 16 8 N -0.72 -10.34 4.86 -60.29 -0.29 -10.63 16 9 C 0.13 2.26 4.56 -4.04 -0.02 2.24 16 10 C -0.07 -1.36 0.54 -154.51 -0.08 -1.44 16 11 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 12 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 13 C 0.04 0.86 4.04 -27.88 -0.11 0.75 16 14 C -0.51 -13.49 7.65 -34.44 -0.26 -13.76 16 15 H 0.06 1.52 5.68 -52.49 -0.30 1.22 16 16 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 17 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 18 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 19 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 C -0.10 -1.03 4.68 -26.65 -0.12 -1.16 16 23 C 0.06 0.49 5.46 -3.84 -0.02 0.47 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 26 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 27 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.08 0.57 8.09 -51.92 -0.42 0.15 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.60 7.66 -51.93 -0.40 0.21 16 31 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.40 4.78 5.65 -40.82 -0.23 4.55 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.03 0.40 6.86 -51.93 -0.36 0.05 16 36 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.05 0.86 8.14 -51.92 -0.42 0.44 16 39 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 40 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.08 1.02 8.04 -51.93 -0.42 0.60 16 45 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.08 0.62 8.12 -51.93 -0.42 0.19 16 47 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 360.90 15.07 5.44 5.44 Total: -1.00 -30.89 360.90 -8.90 -39.80 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -8.64 Total: 0.33 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: -0.02 Total: -9.14 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: -0.75 Total: -42.37 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.09 Total: -10.19 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.89 -8.90 -39.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489837831.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.806 kcal (2) G-P(sol) polarization free energy of solvation -30.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds