Wall clock time and date at job start Tue Mar 31 2020 05:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47398 * 2 1 4 4 C 1.52998 * 109.47152 * 119.99934 * 2 1 3 5 5 C 1.53003 * 109.47394 * 65.00101 * 4 2 1 6 6 N 1.46894 * 109.47376 * 177.92989 * 5 4 2 7 7 C 1.46902 * 111.00022 * 297.54245 * 6 5 4 8 8 C 1.50702 * 109.46988 * 292.76658 * 7 6 5 9 9 H 1.07994 * 120.00042 * 355.15037 * 8 7 6 10 10 C 1.37875 * 119.99804 * 175.15384 * 8 7 6 11 11 N 1.31510 * 120.00279 * 359.97438 * 10 8 7 12 12 Si 1.86808 * 119.99700 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47045 * 60.00432 * 12 10 8 14 14 H 1.48505 * 109.46952 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47282 * 299.99804 * 12 10 8 16 16 C 1.46902 * 111.00073 * 61.49608 * 6 5 4 17 17 C 1.52998 * 109.47305 * 66.04634 * 16 6 5 18 18 C 1.52995 * 109.47320 * 179.97438 * 17 16 6 19 19 H 1.09003 * 110.43099 * 56.09197 * 18 17 16 20 20 C 1.54623 * 110.48687 * 178.77169 * 18 17 16 21 21 C 1.54480 * 101.76619 * 143.48101 * 20 18 17 22 22 N 1.46764 * 105.47135 * 334.57940 * 21 20 18 23 23 C 1.34427 * 111.30066 * 17.02075 * 22 21 20 24 24 O 1.21279 * 124.94158 * 179.55284 * 23 22 21 25 25 H 1.08999 * 109.47156 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47089 * 300.00041 * 1 2 3 27 27 H 1.08999 * 109.47487 * 60.00169 * 1 2 3 28 28 H 1.09003 * 109.47089 * 239.99959 * 2 1 3 29 29 H 1.08997 * 109.47318 * 180.02562 * 3 2 1 30 30 H 1.09008 * 109.46811 * 300.00338 * 3 2 1 31 31 H 1.09001 * 109.47394 * 59.99533 * 3 2 1 32 32 H 1.08994 * 109.47199 * 304.99528 * 4 2 1 33 33 H 1.09004 * 109.47176 * 184.99752 * 4 2 1 34 34 H 1.08996 * 109.47133 * 57.92370 * 5 4 2 35 35 H 1.09007 * 109.46560 * 297.92912 * 5 4 2 36 36 H 1.08999 * 109.47297 * 52.76461 * 7 6 5 37 37 H 1.08997 * 109.47261 * 172.76772 * 7 6 5 38 38 H 0.96998 * 120.00027 * 179.97438 * 11 10 8 39 39 H 1.09002 * 109.46786 * 186.04976 * 16 6 5 40 40 H 1.09002 * 109.47033 * 306.04746 * 16 6 5 41 41 H 1.09000 * 109.46891 * 300.00396 * 17 16 6 42 42 H 1.09002 * 109.46983 * 60.00082 * 17 16 6 43 43 H 1.09001 * 110.96957 * 261.59527 * 20 18 17 44 44 H 1.08995 * 110.97116 * 25.35817 * 20 18 17 45 45 H 1.09004 * 110.24490 * 215.58865 * 21 20 18 46 46 H 1.08994 * 110.32529 * 93.62254 * 21 20 18 47 47 H 0.96999 * 124.35154 * 197.03549 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6352 -2.1955 1.1880 6 7 2.1672 -2.8985 2.3630 7 6 3.6358 -2.8639 2.3769 8 6 4.1685 -3.6825 1.2292 9 1 3.4888 -4.2422 0.6039 10 6 5.5236 -3.7169 0.9776 11 7 6.3513 -3.0350 1.7388 12 14 6.1840 -4.7322 -0.4447 13 1 5.5951 -4.2432 -1.7173 14 1 7.6622 -4.6017 -0.5016 15 1 5.8197 -6.1580 -0.2462 16 6 1.6157 -2.3405 3.6049 17 6 0.1122 -2.6174 3.6649 18 6 -0.4622 -2.0368 4.9586 19 1 -0.2378 -0.9725 5.0305 20 6 -1.9880 -2.2769 5.0289 21 6 -2.1951 -2.5481 6.5356 22 7 -0.9065 -3.0541 7.0230 23 6 0.0855 -2.7758 6.1596 24 8 1.2502 -3.0734 6.3204 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6054 -0.2617 2.1369 33 1 3.1263 -0.6443 1.2951 34 1 2.0392 -2.6458 0.2813 35 1 0.5480 -2.2737 1.1792 36 1 3.9759 -1.8332 2.2767 37 1 4.0000 -3.2769 3.3176 38 1 7.3048 -3.0595 1.5619 39 1 2.1052 -2.8051 4.4608 40 1 1.7881 -1.2644 3.6276 41 1 -0.3773 -2.1529 2.8089 42 1 -0.0602 -3.6935 3.6421 43 1 -2.5375 -1.3900 4.7132 44 1 -2.2744 -3.1438 4.4335 45 1 -2.9735 -3.2973 6.6805 46 1 -2.4586 -1.6260 7.0536 47 1 -0.7862 -3.5285 7.8605 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000517074709.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:06 Heat of formation + Delta-G solvation = -54.706270 kcal Electronic energy + Delta-G solvation = -23355.756983 eV Core-core repulsion = 20151.550626 eV Total energy + Delta-G solvation = -3204.206357 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.41369 -37.84841 -36.32110 -35.19400 -33.31645 -32.15623 -29.42346 -28.30177 -27.15683 -26.88925 -25.17336 -23.47000 -22.03039 -21.96416 -19.98760 -19.68782 -18.77249 -17.33163 -16.73085 -16.08563 -15.19745 -15.00677 -14.74543 -14.40415 -14.23637 -13.84824 -13.68670 -13.51452 -13.02477 -12.98905 -12.62926 -12.43219 -12.35577 -12.01843 -11.85644 -11.73557 -11.51184 -11.12831 -11.06037 -10.87882 -10.72933 -10.62818 -10.51245 -10.41880 -10.24265 -10.16707 -9.79687 -9.60115 -9.22610 -9.13591 -9.03918 -8.30425 -6.96210 -5.90046 -3.90517 2.70448 3.31262 3.40249 3.44017 3.47161 4.28870 4.36824 4.51463 4.60854 4.93892 5.10881 5.21399 5.23265 5.29782 5.31417 5.37925 5.44891 5.55425 5.64505 5.76161 5.81521 5.82806 5.90957 6.01235 6.04063 6.04757 6.15751 6.23159 6.24557 6.33933 6.42897 6.57036 6.67429 6.69593 6.75662 6.80536 6.90912 7.06118 7.07172 7.53139 7.60401 7.94771 8.28239 8.32672 8.40784 8.73451 9.17529 9.72712 11.20549 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013195 B = 0.005022 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.437492 B = 5573.625901 C = 7110.259975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 C -0.145 4.145 4 C -0.151 4.151 5 C 0.065 3.935 6 N -0.535 5.535 7 C 0.190 3.810 8 C -0.501 4.501 9 H 0.061 0.939 10 C 0.055 3.945 11 N -0.899 5.899 12 Si 0.894 3.106 13 H -0.278 1.278 14 H -0.289 1.289 15 H -0.277 1.277 16 C 0.041 3.959 17 C -0.094 4.094 18 C -0.122 4.122 19 H 0.105 0.895 20 C -0.130 4.130 21 C 0.103 3.897 22 N -0.741 5.741 23 C 0.519 3.481 24 O -0.512 6.512 25 H 0.057 0.943 26 H 0.048 0.952 27 H 0.045 0.955 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.048 0.952 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.053 0.947 36 H 0.001 0.999 37 H 0.024 0.976 38 H 0.260 0.740 39 H 0.090 0.910 40 H 0.022 0.978 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.076 0.924 46 H 0.068 0.932 47 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.723 6.184 5.045 21.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 C -0.202 4.202 4 C -0.190 4.190 5 C -0.064 4.064 6 N -0.258 5.258 7 C 0.065 3.935 8 C -0.540 4.540 9 H 0.079 0.921 10 C -0.146 4.146 11 N -0.539 5.539 12 Si 0.722 3.278 13 H -0.204 1.204 14 H -0.215 1.215 15 H -0.203 1.203 16 C -0.087 4.087 17 C -0.132 4.132 18 C -0.144 4.144 19 H 0.123 0.877 20 C -0.168 4.168 21 C -0.022 4.022 22 N -0.398 5.398 23 C 0.305 3.695 24 O -0.387 6.387 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.019 0.981 37 H 0.042 0.958 38 H 0.069 0.931 39 H 0.109 0.891 40 H 0.040 0.960 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.107 0.893 44 H 0.103 0.897 45 H 0.094 0.906 46 H 0.086 0.914 47 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -19.038 5.615 5.019 20.474 hybrid contribution 0.694 0.217 -0.232 0.764 sum -18.344 5.832 4.787 19.835 Atomic orbital electron populations 1.21862 0.96016 1.01555 1.00677 1.21047 0.95092 0.95728 0.99371 1.21829 1.01228 0.96467 1.00677 1.22272 1.02505 0.97955 0.96301 1.22093 0.97757 0.90649 0.95864 1.62315 1.11091 1.52372 0.99993 1.19746 0.80256 0.96003 0.97494 1.21129 0.91604 1.28028 1.13237 0.92126 1.24966 0.97017 0.95937 0.96665 1.69956 1.03024 1.41996 1.38962 0.86627 0.77531 0.80859 0.82756 1.20385 1.21483 1.20273 1.22291 0.93675 0.97277 0.95453 1.21444 0.97039 1.01154 0.93606 1.22004 0.95341 1.01578 0.95515 0.87708 1.22696 0.95356 1.03540 0.95188 1.22018 0.85776 0.99386 0.95041 1.46260 1.09314 1.60196 1.24007 1.20967 0.85222 0.78528 0.84775 1.90774 1.16872 1.53788 1.77228 0.92437 0.93292 0.93553 0.91272 0.92678 0.93454 0.93278 0.93024 0.90678 0.90544 0.92913 0.98098 0.95780 0.93055 0.89147 0.96017 0.91276 0.91260 0.89319 0.89688 0.90566 0.91369 0.75505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 8.95 37.16 0.33 -1.44 16 2 C -0.09 -1.39 2.92 -90.62 -0.26 -1.66 16 3 C -0.14 -1.97 9.19 37.16 0.34 -1.63 16 4 C -0.15 -2.72 4.02 -26.73 -0.11 -2.83 16 5 C 0.06 1.26 4.66 -3.83 -0.02 1.24 16 6 N -0.54 -11.98 4.69 -236.07 -1.11 -13.09 16 7 C 0.19 5.17 4.54 -4.97 -0.02 5.15 16 8 C -0.50 -14.51 8.39 -34.44 -0.29 -14.79 16 9 H 0.06 1.74 7.38 -52.49 -0.39 1.35 16 10 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 11 N -0.90 -27.60 13.29 55.43 0.74 -26.87 16 12 Si 0.89 22.29 29.54 -169.99 -5.02 17.27 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 15 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 16 C 0.04 0.80 4.53 -3.82 -0.02 0.79 16 17 C -0.09 -1.38 4.56 -26.73 -0.12 -1.51 16 18 C -0.12 -1.43 2.98 -90.64 -0.27 -1.70 16 19 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 20 C -0.13 -0.98 6.70 -25.10 -0.17 -1.15 16 21 C 0.10 0.68 7.78 -3.12 -0.02 0.65 16 22 N -0.74 -7.38 6.24 -59.20 -0.37 -7.75 16 23 C 0.52 7.40 7.83 -10.86 -0.09 7.31 16 24 O -0.51 -9.93 15.45 5.56 0.09 -9.84 16 25 H 0.06 0.71 6.61 -51.93 -0.34 0.36 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.89 6.41 -51.93 -0.33 0.55 16 33 H 0.07 1.63 6.21 -51.93 -0.32 1.31 16 34 H 0.08 1.65 6.98 -51.93 -0.36 1.28 16 35 H 0.05 0.88 4.93 -51.93 -0.26 0.63 16 36 H 0.00 0.04 5.99 -51.93 -0.31 -0.27 16 37 H 0.02 0.73 7.91 -51.93 -0.41 0.31 16 38 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 39 H 0.09 2.02 5.47 -51.93 -0.28 1.74 16 40 H 0.02 0.42 6.09 -51.93 -0.32 0.10 16 41 H 0.07 0.92 6.52 -51.93 -0.34 0.58 16 42 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.08 0.64 7.91 -51.93 -0.41 0.23 16 45 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 46 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.41 3.48 8.96 -40.82 -0.37 3.11 16 LS Contribution 358.29 15.07 5.40 5.40 Total: -1.00 -33.66 358.29 -9.31 -42.98 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -8.23 Total: 1.97 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -0.81 Total: -10.07 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: -0.74 Total: -47.70 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.09 Total: -9.84 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.66 -9.31 -42.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517074709.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.730 kcal (2) G-P(sol) polarization free energy of solvation -33.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds