Wall clock time and date at job start Tue Mar 31 2020 05:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47081 * 2 1 4 4 C 1.52992 * 109.47094 * 120.00335 * 2 1 3 5 5 C 1.53004 * 109.47170 * 65.00214 * 4 2 1 6 6 N 1.46902 * 109.47330 * 179.37785 * 5 4 2 7 7 C 1.46899 * 111.00172 * 61.00403 * 6 5 4 8 8 C 1.50693 * 109.47111 * 66.04491 * 7 6 5 9 9 H 1.08004 * 120.00273 * 0.02562 * 8 7 6 10 10 C 1.37887 * 120.00082 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99546 * 359.72882 * 10 8 7 12 12 Si 1.86794 * 120.00084 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47223 * 179.72694 * 12 10 8 14 14 H 1.48502 * 109.47106 * 299.72581 * 12 10 8 15 15 H 1.48501 * 109.46992 * 59.72379 * 12 10 8 16 16 C 1.46901 * 110.99596 * 297.05243 * 6 5 4 17 17 C 1.53002 * 109.47228 * 288.27145 * 16 6 5 18 18 C 1.52995 * 109.47542 * 177.93638 * 17 16 6 19 19 H 1.09002 * 110.43422 * 303.91609 * 18 17 16 20 20 C 1.54629 * 110.49062 * 181.23163 * 18 17 16 21 21 C 1.54483 * 101.76157 * 266.11816 * 20 18 17 22 22 N 1.46762 * 105.47485 * 334.58475 * 21 20 18 23 23 C 1.34422 * 111.30041 * 17.01231 * 22 21 20 24 24 O 1.21278 * 124.93946 * 179.62942 * 23 22 21 25 25 H 1.09009 * 109.47236 * 59.99995 * 1 2 3 26 26 H 1.08997 * 109.47284 * 179.97438 * 1 2 3 27 27 H 1.08990 * 109.47449 * 300.00023 * 1 2 3 28 28 H 1.09002 * 109.47259 * 240.00401 * 2 1 3 29 29 H 1.09000 * 109.47063 * 179.97438 * 3 2 1 30 30 H 1.08993 * 109.47489 * 300.00037 * 3 2 1 31 31 H 1.08998 * 109.46962 * 60.00558 * 3 2 1 32 32 H 1.09002 * 109.47521 * 305.00083 * 4 2 1 33 33 H 1.09005 * 109.47573 * 184.99776 * 4 2 1 34 34 H 1.09002 * 109.47251 * 59.37535 * 5 4 2 35 35 H 1.08997 * 109.46915 * 299.37531 * 5 4 2 36 36 H 1.09006 * 109.46784 * 306.04497 * 7 6 5 37 37 H 1.08999 * 109.46885 * 186.05229 * 7 6 5 38 38 H 0.96997 * 120.00011 * 0.27174 * 11 10 8 39 39 H 1.08993 * 109.47826 * 48.27404 * 16 6 5 40 40 H 1.09006 * 109.47188 * 168.28064 * 16 6 5 41 41 H 1.09003 * 109.47249 * 297.94102 * 17 16 6 42 42 H 1.09002 * 109.46829 * 57.93536 * 17 16 6 43 43 H 1.08999 * 110.96713 * 24.23438 * 20 18 17 44 44 H 1.08996 * 110.97093 * 147.99858 * 20 18 17 45 45 H 1.09002 * 110.24156 * 215.57780 * 21 20 18 46 46 H 1.09008 * 110.24374 * 93.58326 * 21 20 18 47 47 H 0.96997 * 124.34702 * 197.04237 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 1.2491 5 6 1.6352 -2.1955 1.1878 6 7 2.1377 -2.8914 2.3800 7 6 1.5656 -2.3170 3.6050 8 6 0.0817 -2.5776 3.6366 9 1 -0.3893 -3.1164 2.8277 10 6 -0.6747 -2.1291 4.6987 11 7 -0.1001 -1.4785 5.6867 12 14 -2.5139 -2.4527 4.7381 13 1 -3.0911 -1.8783 5.9799 14 1 -3.1533 -1.8202 3.5564 15 1 -2.7596 -3.9170 4.7092 16 6 3.6058 -2.8680 2.4234 17 6 4.1628 -3.8029 1.3479 18 6 5.6914 -3.7396 1.3588 19 1 6.0307 -2.7123 1.2255 20 6 6.2789 -4.6537 0.2587 21 6 6.5339 -5.9621 1.0394 22 7 6.7055 -5.5558 2.4392 23 6 6.2360 -4.3137 2.6482 24 8 6.2477 -3.7371 3.7150 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6053 -0.2619 2.1369 33 1 3.1263 -0.6444 1.2951 34 1 2.0607 -2.6523 0.2942 35 1 0.5485 -2.2728 1.1530 36 1 1.7462 -1.2421 3.6210 37 1 2.0340 -2.7771 4.4751 38 1 0.8551 -1.3107 5.6663 39 1 3.9587 -1.8531 2.2407 40 1 3.9457 -3.1998 3.4045 41 1 3.8400 -4.8240 1.5514 42 1 3.7933 -3.4931 0.3704 43 1 5.5577 -4.8120 -0.5431 44 1 7.2107 -4.2446 -0.1319 45 1 7.4382 -6.4490 0.6743 46 1 5.6790 -6.6315 0.9430 47 1 7.1067 -6.1119 3.1252 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000517074711.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:10 Heat of formation + Delta-G solvation = -60.142702 kcal Electronic energy + Delta-G solvation = -23384.262161 eV Core-core repulsion = 20179.820063 eV Total energy + Delta-G solvation = -3204.442098 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.49118 -37.97844 -36.41404 -35.26853 -33.40991 -32.27575 -29.54820 -28.28452 -27.04431 -26.80825 -25.01619 -23.60382 -22.20126 -21.90957 -20.12530 -19.95426 -19.04294 -17.39765 -16.55310 -16.03758 -15.70107 -15.14171 -14.78568 -14.46095 -14.00624 -13.81441 -13.62777 -13.58655 -13.16335 -13.04851 -12.85621 -12.55450 -12.34422 -12.06232 -11.86913 -11.85179 -11.52261 -11.20737 -11.03759 -10.87620 -10.78695 -10.74971 -10.55200 -10.35067 -10.28795 -10.11255 -10.00215 -9.75333 -9.49914 -9.18970 -8.56619 -8.28078 -7.14282 -6.27313 -3.95222 2.65308 3.30055 3.47939 3.50841 3.69108 4.24986 4.29096 4.56125 4.62378 4.82610 5.02692 5.17470 5.22925 5.24375 5.30146 5.36678 5.45437 5.49844 5.54705 5.66245 5.77087 5.83106 5.87562 5.91056 5.95034 6.04435 6.10310 6.14476 6.17680 6.30806 6.39685 6.49630 6.54771 6.58232 6.61600 6.75221 6.81824 6.94728 6.95546 7.22251 7.27800 7.91767 8.12477 8.26636 8.44265 8.67907 8.96813 9.75027 11.11642 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013111 B = 0.005049 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.063615 B = 5544.758032 C = 6940.161883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 C -0.145 4.145 4 C -0.153 4.153 5 C 0.066 3.934 6 N -0.529 5.529 7 C 0.181 3.819 8 C -0.582 4.582 9 H 0.055 0.945 10 C 0.013 3.987 11 N -0.916 5.916 12 Si 1.069 2.931 13 H -0.284 1.284 14 H -0.289 1.289 15 H -0.288 1.288 16 C 0.045 3.955 17 C -0.093 4.093 18 C -0.123 4.123 19 H 0.102 0.898 20 C -0.130 4.130 21 C 0.102 3.898 22 N -0.737 5.737 23 C 0.523 3.477 24 O -0.524 6.524 25 H 0.044 0.956 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.052 0.948 34 H 0.050 0.950 35 H 0.083 0.917 36 H -0.012 1.012 37 H 0.016 0.984 38 H 0.267 0.733 39 H 0.030 0.970 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.092 0.908 44 H 0.080 0.920 45 H 0.076 0.924 46 H 0.072 0.928 47 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.846 -4.633 -15.400 19.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.108 4.108 3 C -0.203 4.203 4 C -0.191 4.191 5 C -0.063 4.063 6 N -0.251 5.251 7 C 0.055 3.945 8 C -0.621 4.621 9 H 0.073 0.927 10 C -0.190 4.190 11 N -0.552 5.552 12 Si 0.898 3.102 13 H -0.209 1.209 14 H -0.215 1.215 15 H -0.215 1.215 16 C -0.083 4.083 17 C -0.131 4.131 18 C -0.145 4.145 19 H 0.120 0.880 20 C -0.168 4.168 21 C -0.022 4.022 22 N -0.394 5.394 23 C 0.309 3.691 24 O -0.399 6.399 25 H 0.063 0.937 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.101 0.899 36 H 0.005 0.995 37 H 0.034 0.966 38 H 0.077 0.923 39 H 0.048 0.952 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.111 0.889 44 H 0.099 0.901 45 H 0.095 0.905 46 H 0.090 0.910 47 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 10.260 -4.516 -14.021 17.951 hybrid contribution 1.954 0.279 -0.563 2.053 sum 12.214 -4.236 -14.584 19.489 Atomic orbital electron populations 1.21854 0.95154 1.02253 1.01080 1.21005 0.96093 0.95486 0.98193 1.21840 1.00378 0.96738 1.01317 1.22284 0.99921 0.98616 0.98327 1.22103 1.01533 0.90118 0.92498 1.62239 1.03834 1.54875 1.04175 1.19856 0.95819 0.92297 0.86497 1.21928 0.92188 1.39062 1.08877 0.92711 1.25781 1.06416 0.94271 0.92536 1.70776 1.13295 1.38776 1.32401 0.83537 0.74577 0.76165 0.75927 1.20940 1.21531 1.21496 1.22164 0.90154 0.97055 0.98967 1.21427 0.89687 1.01545 1.00486 1.22032 0.98319 1.01081 0.93101 0.87960 1.22682 1.02056 0.94425 0.97624 1.22040 1.01868 0.97386 0.80946 1.46215 1.63587 1.17545 1.12018 1.20899 0.76282 0.81601 0.90285 1.90774 1.56064 1.63916 1.29159 0.93720 0.92097 0.92427 0.92076 0.93281 0.93283 0.92758 0.90820 0.92981 0.93127 0.89891 0.99477 0.96647 0.92298 0.95225 0.90972 0.91155 0.90838 0.88923 0.90146 0.90544 0.90960 0.75417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 8.95 37.16 0.33 -1.89 16 2 C -0.09 -1.31 2.92 -90.63 -0.26 -1.57 16 3 C -0.15 -1.93 9.19 37.16 0.34 -1.59 16 4 C -0.15 -2.73 4.04 -26.73 -0.11 -2.84 16 5 C 0.07 1.26 4.75 -3.82 -0.02 1.24 16 6 N -0.53 -11.61 4.66 -236.07 -1.10 -12.71 16 7 C 0.18 4.82 3.80 -4.98 -0.02 4.80 16 8 C -0.58 -16.67 8.50 -34.44 -0.29 -16.97 16 9 H 0.05 1.56 7.11 -52.48 -0.37 1.19 16 10 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 11 N -0.92 -28.61 13.65 55.43 0.76 -27.85 16 12 Si 1.07 25.82 29.90 -169.99 -5.08 20.74 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 15 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 16 C 0.05 0.86 4.59 -3.82 -0.02 0.84 16 17 C -0.09 -1.33 4.71 -26.73 -0.13 -1.45 16 18 C -0.12 -1.46 2.98 -90.63 -0.27 -1.73 16 19 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 20 C -0.13 -0.99 6.71 -25.10 -0.17 -1.16 16 21 C 0.10 0.74 7.78 -3.12 -0.02 0.72 16 22 N -0.74 -7.75 6.24 -59.20 -0.37 -8.12 16 23 C 0.52 7.59 7.32 -10.86 -0.08 7.51 16 24 O -0.52 -10.15 16.84 5.56 0.09 -10.06 16 25 H 0.04 0.58 8.14 -51.92 -0.42 0.15 16 26 H 0.06 0.96 6.58 -51.93 -0.34 0.62 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 1.59 6.33 -51.93 -0.33 1.26 16 33 H 0.05 0.90 6.21 -51.93 -0.32 0.58 16 34 H 0.05 0.84 6.55 -51.93 -0.34 0.50 16 35 H 0.08 1.75 5.28 -51.93 -0.27 1.48 16 36 H -0.01 -0.34 5.91 -51.93 -0.31 -0.65 16 37 H 0.02 0.45 7.72 -51.93 -0.40 0.05 16 38 H 0.27 8.41 7.22 -40.82 -0.29 8.11 16 39 H 0.03 0.56 5.87 -51.93 -0.31 0.26 16 40 H 0.07 1.58 6.39 -51.93 -0.33 1.24 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.07 0.95 6.62 -51.93 -0.34 0.60 16 43 H 0.09 0.59 7.90 -51.93 -0.41 0.18 16 44 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 47 H 0.41 3.71 8.96 -40.82 -0.37 3.34 16 LS Contribution 358.56 15.07 5.40 5.40 Total: -1.00 -34.01 358.56 -9.30 -43.31 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -8.19 Total: 3.07 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: -0.81 Total: -13.79 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: -0.71 Total: -48.68 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 25.82 SS G_CDS: -5.08 Total: 20.74 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.01 -9.30 -43.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517074711.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.834 kcal (2) G-P(sol) polarization free energy of solvation -34.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds