Wall clock time and date at job start Tue Mar 31 2020 05:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47055 * 2 1 4 4 C 1.53003 * 109.47043 * 119.99776 * 2 1 3 5 5 C 1.52997 * 109.46935 * 240.00092 * 2 1 3 6 6 H 1.08997 * 109.47332 * 305.49280 * 5 2 1 7 7 N 1.46899 * 109.46691 * 185.49368 * 5 2 1 8 8 C 1.50701 * 109.47163 * 65.49072 * 5 2 1 9 9 O 1.21283 * 119.99599 * 94.85570 * 8 5 2 10 10 N 1.34766 * 120.00257 * 274.85579 * 8 5 2 11 11 C 1.46929 * 120.63130 * 355.94319 * 10 8 5 12 12 C 1.52762 * 109.00925 * 233.58657 * 11 10 8 13 13 C 1.53041 * 109.38092 * 305.58724 * 12 11 10 14 14 C 1.52998 * 109.45195 * 181.25478 * 13 12 11 15 15 C 1.50704 * 109.47219 * 64.93632 * 14 13 12 16 16 H 1.07998 * 119.99850 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00162 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99852 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00062 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46925 * 59.99591 * 19 17 15 21 21 H 1.48495 * 109.47139 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47074 * 299.99713 * 19 17 15 23 23 C 1.53043 * 109.54228 * 61.24000 * 13 12 11 24 24 C 1.46928 * 120.63033 * 176.22200 * 10 8 5 25 25 H 1.08997 * 109.47456 * 175.23953 * 1 2 3 26 26 H 1.08993 * 109.47373 * 55.23197 * 1 2 3 27 27 H 1.09002 * 109.46963 * 295.23615 * 1 2 3 28 28 H 1.08999 * 109.46724 * 60.00443 * 3 2 1 29 29 H 1.08995 * 109.46574 * 179.97438 * 3 2 1 30 30 H 1.08993 * 109.47112 * 299.99911 * 3 2 1 31 31 H 1.08999 * 109.46990 * 60.00343 * 4 2 1 32 32 H 1.09000 * 109.46969 * 179.97438 * 4 2 1 33 33 H 1.08994 * 109.47464 * 300.00396 * 4 2 1 34 34 H 1.00913 * 110.99650 * 176.04798 * 7 5 2 35 35 H 1.00895 * 111.00359 * 299.99426 * 7 5 2 36 36 H 1.09000 * 109.58488 * 353.41248 * 11 10 8 37 37 H 1.08997 * 109.59028 * 113.84137 * 11 10 8 38 38 H 1.08998 * 109.56560 * 185.55177 * 12 11 10 39 39 H 1.08999 * 109.36353 * 65.49311 * 12 11 10 40 40 H 1.09008 * 109.46098 * 301.21971 * 13 12 11 41 41 H 1.08996 * 109.47771 * 184.93520 * 14 13 12 42 42 H 1.09007 * 109.46954 * 304.93848 * 14 13 12 43 43 H 0.97004 * 120.00026 * 180.02562 * 18 17 15 44 44 H 1.09002 * 109.50007 * 178.68856 * 23 13 12 45 45 H 1.09000 * 109.49554 * 58.58357 * 23 13 12 46 46 H 1.09006 * 109.58596 * 246.15315 * 24 10 8 47 47 H 1.08989 * 109.58986 * 6.43717 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 2.0400 -0.7212 -1.2492 6 1 1.5985 -1.7165 -1.2998 7 7 3.5029 -0.8371 -1.1847 8 6 1.6517 0.0634 -2.4759 9 8 2.4328 0.8529 -2.9631 10 7 0.4365 -0.1123 -3.0316 11 6 -0.4867 -1.1279 -2.5070 12 6 -0.9310 -2.0356 -3.6526 13 6 -1.5115 -1.1811 -4.7818 14 6 -1.9857 -2.0907 -5.9169 15 6 -3.1294 -2.9442 -5.4323 16 1 -3.4823 -2.8478 -4.4162 17 6 -3.7243 -3.8489 -6.2859 18 7 -3.2941 -3.9667 -7.5231 19 14 -5.1414 -4.9073 -5.6850 20 1 -6.2612 -4.0345 -5.2499 21 1 -5.6017 -5.7901 -6.7868 22 1 -4.6880 -5.7383 -4.5408 23 6 -0.4356 -0.2282 -5.3077 24 6 0.0122 0.7038 -4.1773 25 1 -0.3634 -1.0241 -0.0853 26 1 -0.3634 0.5860 -0.8441 27 1 -0.3633 0.4382 0.9296 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 -1.7489 1.2493 32 1 3.1300 -0.7216 1.2491 33 1 1.6766 -0.2075 2.1392 34 1 3.8586 -1.3663 -1.9669 35 1 3.9360 0.0729 -1.1372 36 1 0.0185 -1.7229 -1.7462 37 1 -1.3588 -0.6393 -2.0723 38 1 -1.6909 -2.7300 -3.2944 39 1 -0.0725 -2.5949 -4.0243 40 1 -2.3548 -0.6032 -4.4032 41 1 -2.3182 -1.4807 -6.7567 42 1 -1.1639 -2.7317 -6.2363 43 1 -3.7130 -4.6029 -8.1237 44 1 -0.8429 0.3637 -6.1273 45 1 0.4183 -0.8046 -5.6637 46 1 -0.8184 1.3448 -3.8816 47 1 0.8455 1.3188 -4.5164 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000521438216.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:08 Heat of formation + Delta-G solvation = -60.398664 kcal Electronic energy + Delta-G solvation = -23959.742989 eV Core-core repulsion = 20755.289792 eV Total energy + Delta-G solvation = -3204.453198 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.78080 -37.93800 -36.91139 -34.08757 -32.64536 -32.19034 -30.96134 -28.26572 -27.47240 -27.35114 -26.01360 -24.24790 -22.86540 -21.83218 -20.30591 -19.24176 -18.17715 -17.26190 -16.46637 -16.32167 -15.99144 -15.11494 -14.75962 -14.56891 -14.07993 -13.79764 -13.70081 -13.50186 -13.34737 -12.98163 -12.92106 -12.61095 -12.37529 -12.12099 -12.03864 -11.86542 -11.69366 -11.22154 -11.11842 -11.01721 -10.91795 -10.75695 -10.73255 -10.69275 -10.44607 -10.18341 -10.05930 -9.68091 -9.30310 -9.01468 -8.79882 -8.40073 -8.36540 -6.02807 -4.05250 2.63289 3.12441 3.29649 3.35213 3.36374 4.27176 4.42342 4.47712 4.61850 4.64905 4.90877 5.09585 5.23845 5.30406 5.32126 5.35545 5.45632 5.47746 5.52182 5.57449 5.64471 5.68722 5.71455 5.80241 5.83082 5.93822 5.95044 6.02501 6.04602 6.19425 6.28744 6.32953 6.34368 6.47126 6.62444 6.85079 6.91532 6.94551 7.06717 7.22924 7.53560 7.62981 7.77492 7.96374 8.21115 8.38450 9.00982 9.58729 11.08411 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025404 B = 0.004052 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.914032 B = 6908.341134 C = 7449.952298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.052 4.052 3 C -0.145 4.145 4 C -0.129 4.129 5 C 0.080 3.920 6 H 0.103 0.897 7 N -0.818 5.818 8 C 0.485 3.515 9 O -0.557 6.557 10 N -0.598 5.598 11 C 0.098 3.902 12 C -0.122 4.122 13 C -0.080 4.080 14 C 0.028 3.972 15 C -0.518 4.518 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.889 3.111 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.128 4.128 24 C 0.109 3.891 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.344 0.656 35 H 0.348 0.652 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.015 0.985 42 H 0.015 0.985 43 H 0.261 0.739 44 H 0.069 0.931 45 H 0.059 0.941 46 H 0.063 0.937 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.125 7.735 15.162 19.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.053 4.053 3 C -0.202 4.202 4 C -0.186 4.186 5 C -0.036 4.036 6 H 0.121 0.879 7 N -0.348 5.348 8 C 0.272 3.728 9 O -0.436 6.436 10 N -0.331 5.331 11 C -0.024 4.024 12 C -0.160 4.160 13 C -0.099 4.099 14 C -0.009 4.009 15 C -0.556 4.556 16 H 0.073 0.927 17 C -0.144 4.144 18 N -0.535 5.535 19 Si 0.717 3.283 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.167 4.167 24 C -0.013 4.013 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.156 0.844 35 H 0.163 0.837 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.034 0.966 42 H 0.033 0.967 43 H 0.070 0.930 44 H 0.088 0.912 45 H 0.078 0.922 46 H 0.081 0.919 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 9.395 7.662 15.428 19.622 hybrid contribution -0.988 -0.204 -0.891 1.346 sum 8.407 7.458 14.538 18.375 Atomic orbital electron populations 1.22323 0.94134 1.02567 1.02524 1.20442 0.95490 0.95550 0.93807 1.21924 1.01345 0.95054 1.01888 1.21727 1.02252 0.99592 0.95076 1.21716 0.90598 0.99541 0.91731 0.87909 1.59194 1.02714 1.23278 1.49569 1.21909 0.81354 0.83465 0.86104 1.90650 1.50524 1.38037 1.64400 1.48280 1.15603 1.36986 1.32220 1.22208 0.92925 0.89908 0.97371 1.21874 1.01174 0.97785 0.95178 1.21184 0.95373 0.96049 0.97250 1.19118 0.95891 0.93595 0.92303 1.21187 1.16375 1.20388 0.97643 0.92654 1.25018 0.97175 0.97284 0.94918 1.69953 1.41829 1.36375 1.05298 0.86705 0.82832 0.80434 0.78306 1.20288 1.21353 1.20254 1.22014 0.99738 0.98034 0.96875 1.21676 0.99803 0.93488 0.86377 0.91655 0.91822 0.92184 0.92508 0.92242 0.92509 0.92720 0.91232 0.93125 0.84389 0.83749 0.90015 0.91147 0.89570 0.92398 0.92351 0.96627 0.96688 0.92962 0.91209 0.92192 0.91912 0.89858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 6.61 37.16 0.25 -1.24 16 2 C -0.05 -0.51 0.62 -154.51 -0.10 -0.60 16 3 C -0.14 -1.48 7.81 37.16 0.29 -1.19 16 4 C -0.13 -1.12 8.26 37.16 0.31 -0.82 16 5 C 0.08 0.89 2.16 -68.87 -0.15 0.74 16 6 H 0.10 1.12 6.06 -51.93 -0.31 0.80 16 7 N -0.82 -8.57 8.02 -5.66 -0.05 -8.62 16 8 C 0.49 6.77 5.20 -10.99 -0.06 6.72 16 9 O -0.56 -9.31 15.05 5.55 0.08 -9.22 16 10 N -0.60 -8.34 2.45 -173.03 -0.42 -8.77 16 11 C 0.10 1.27 4.00 -3.93 -0.02 1.26 16 12 C -0.12 -2.03 5.17 -26.83 -0.14 -2.17 16 13 C -0.08 -1.51 2.10 -90.58 -0.19 -1.70 16 14 C 0.03 0.69 4.45 -27.88 -0.12 0.56 16 15 C -0.52 -13.83 8.39 -34.44 -0.29 -14.11 16 16 H 0.06 1.41 7.05 -52.49 -0.37 1.04 16 17 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 18 N -0.90 -26.39 13.29 55.43 0.74 -25.66 16 19 Si 0.89 21.02 29.54 -169.99 -5.02 15.99 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 C -0.13 -2.15 5.36 -26.61 -0.14 -2.29 16 24 C 0.11 1.61 6.44 -3.71 -0.02 1.58 16 25 H 0.06 0.57 6.35 -51.93 -0.33 0.24 16 26 H 0.06 0.68 5.76 -51.93 -0.30 0.38 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.60 6.78 -51.93 -0.35 0.25 16 30 H 0.06 0.70 6.72 -51.93 -0.35 0.35 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.64 7.46 -51.93 -0.39 0.25 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.34 3.56 9.06 -39.29 -0.36 3.20 16 35 H 0.35 3.75 6.93 -39.29 -0.27 3.48 16 36 H 0.08 0.90 3.97 -51.93 -0.21 0.70 16 37 H 0.07 0.86 7.13 -51.93 -0.37 0.49 16 38 H 0.09 1.52 6.91 -51.93 -0.36 1.16 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 46 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.08 1.28 7.00 -51.93 -0.36 0.92 16 LS Contribution 346.75 15.07 5.23 5.23 Total: -1.00 -29.79 346.75 -8.04 -37.83 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -8.11 Total: 5.00 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -0.48 Total: -11.78 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: 0.27 Total: -43.05 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.08 Total: -9.22 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.79 -8.04 -37.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000521438216.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.571 kcal (2) G-P(sol) polarization free energy of solvation -29.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds