Wall clock time and date at job start Tue Mar 31 2020 05:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47171 * 2 1 4 4 C 1.52999 * 109.47195 * 175.00261 * 3 2 1 5 5 C 1.52998 * 109.46929 * 185.00427 * 4 3 2 6 6 N 1.46503 * 109.47365 * 295.00298 * 3 2 1 7 7 C 1.34779 * 119.99956 * 115.13039 * 6 3 2 8 8 O 1.21586 * 119.99513 * 186.11493 * 7 6 3 9 9 N 1.34771 * 120.00251 * 6.12107 * 7 6 3 10 10 C 1.46495 * 120.00191 * 174.73301 * 9 7 6 11 11 C 1.52998 * 109.47369 * 180.27702 * 10 9 7 12 12 C 1.52997 * 109.47595 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47529 * 179.97438 * 12 11 10 14 14 H 1.08005 * 120.00030 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00071 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00219 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99788 * 180.02562 * 15 13 12 18 18 H 1.48491 * 109.47138 * 59.99956 * 17 15 13 19 19 H 1.48497 * 109.46620 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46866 * 299.99734 * 17 15 13 21 21 C 1.46502 * 120.00010 * 295.13729 * 6 3 2 22 22 C 1.53001 * 117.49947 * 196.46920 * 21 6 3 23 23 C 1.52998 * 117.50054 * 127.84586 * 21 6 3 24 24 H 1.08997 * 109.47306 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46994 * 299.99848 * 1 2 3 26 26 H 1.09002 * 109.47045 * 59.99744 * 1 2 3 27 27 H 1.08997 * 109.46768 * 240.00650 * 2 1 3 28 28 H 1.08994 * 109.47409 * 119.99732 * 2 1 3 29 29 H 1.08998 * 109.46910 * 55.00050 * 3 2 1 30 30 H 1.09002 * 109.47124 * 304.99648 * 4 3 2 31 31 H 1.08999 * 109.47098 * 65.00236 * 4 3 2 32 32 H 1.09011 * 109.47156 * 299.99462 * 5 4 3 33 33 H 1.09001 * 109.47661 * 59.99515 * 5 4 3 34 34 H 1.09003 * 109.47333 * 180.02562 * 5 4 3 35 35 H 0.97009 * 120.00002 * 355.00850 * 9 7 6 36 36 H 1.09006 * 109.47218 * 300.27606 * 10 9 7 37 37 H 1.08990 * 109.47246 * 60.27673 * 10 9 7 38 38 H 1.08998 * 109.47038 * 300.00419 * 11 10 9 39 39 H 1.09006 * 109.47331 * 59.99626 * 11 10 9 40 40 H 1.08998 * 109.47487 * 300.00410 * 12 11 10 41 41 H 1.09001 * 109.46468 * 59.99856 * 12 11 10 42 42 H 0.97000 * 120.00589 * 180.02562 * 16 15 13 43 43 H 1.09000 * 115.54470 * 342.18038 * 21 6 3 44 44 H 1.09001 * 117.49536 * 359.97438 * 22 21 6 45 45 H 1.08991 * 117.49677 * 145.01807 * 22 21 6 46 46 H 1.08995 * 117.49892 * 214.98133 * 23 21 6 47 47 H 1.09003 * 117.49681 * 359.97438 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4444 0.1257 5 6 4.0644 2.8850 0.2512 6 7 1.6524 2.0976 -1.2518 7 6 0.7928 3.1355 -1.2312 8 8 0.3847 3.6076 -2.2747 9 7 0.3858 3.6501 -0.0540 10 6 -0.4558 4.8489 -0.0304 11 6 -0.7677 5.2248 1.4195 12 6 -1.6462 6.4772 1.4441 13 6 -1.9539 6.8470 2.8723 14 1 -1.5624 6.2484 3.6815 15 6 -2.7361 7.9490 3.1458 16 7 -3.2132 8.6777 2.1605 17 14 -3.1169 8.4078 4.9162 18 1 -1.8495 8.6786 5.6409 19 1 -3.9706 9.6226 4.9399 20 1 -3.8340 7.2865 5.5748 21 6 2.1991 1.6244 -2.5260 22 6 2.0801 2.5547 -3.7348 23 6 1.2062 1.3021 -3.6445 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6054 1.9815 0.8418 30 1 3.8571 0.8801 1.0113 31 1 4.0029 0.9837 -0.7597 32 1 3.7722 3.4494 -0.6345 33 1 3.6263 3.3458 1.1365 34 1 5.1508 2.8864 0.3402 35 1 0.6534 3.2290 0.7780 36 1 0.0705 5.6720 -0.5139 37 1 -1.3861 4.6503 -0.5624 38 1 -1.2940 4.4018 1.9030 39 1 0.1627 5.4235 1.9516 40 1 -1.1196 7.3000 0.9608 41 1 -2.5766 6.2788 0.9120 42 1 -3.7632 9.4532 2.3529 43 1 3.0932 1.0053 -2.4529 44 1 1.5947 3.5187 -3.5821 45 1 2.8962 2.5480 -4.4572 46 1 1.4473 0.4714 -4.3076 47 1 0.1462 1.4418 -3.4322 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531393598.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:58 Heat of formation + Delta-G solvation = -13.875628 kcal Electronic energy + Delta-G solvation = -23272.260392 eV Core-core repulsion = 20069.824584 eV Total energy + Delta-G solvation = -3202.435807 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.73519 -37.40994 -36.54158 -34.90896 -33.22889 -32.31847 -32.01895 -30.71301 -26.84900 -26.37568 -23.70308 -22.33074 -22.29414 -22.15427 -21.62076 -20.51234 -19.15032 -17.86388 -16.56747 -16.05505 -15.82822 -15.26770 -14.73509 -14.58388 -14.47701 -14.27309 -14.10993 -13.77560 -13.51630 -13.18718 -12.89488 -12.48053 -12.25029 -11.86470 -11.83234 -11.80969 -11.66995 -11.41840 -11.15036 -11.10432 -10.97372 -10.86521 -10.73136 -10.64938 -10.60425 -10.31859 -9.84663 -9.63576 -9.33316 -9.12240 -8.74828 -8.36087 -8.23510 -6.00746 -4.03947 2.65728 3.27381 3.32413 3.37239 3.39034 3.87038 4.04070 4.35549 4.45220 4.69758 4.73947 4.86587 4.95464 5.02888 5.13944 5.17812 5.24002 5.32394 5.34894 5.41479 5.64544 5.66296 5.72457 5.73701 5.76417 5.79184 5.82877 5.83999 5.94403 6.06721 6.10994 6.17402 6.20198 6.41890 6.53414 6.63786 6.81266 6.85777 7.05459 7.06741 7.64569 7.77861 7.98007 8.11631 8.39040 8.79449 9.02498 9.60099 11.10504 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021794 B = 0.003463 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.472183 B = 8084.033267 C = 8477.750588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.132 4.132 3 C 0.141 3.859 4 C -0.133 4.133 5 C -0.152 4.152 6 N -0.595 5.595 7 C 0.706 3.294 8 O -0.584 6.584 9 N -0.742 5.742 10 C 0.135 3.865 11 C -0.120 4.120 12 C 0.025 3.975 13 C -0.523 4.523 14 H 0.054 0.946 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.091 3.909 22 C -0.192 4.192 23 C -0.188 4.188 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.391 0.609 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.262 0.738 43 H 0.124 0.876 44 H 0.140 0.860 45 H 0.083 0.917 46 H 0.088 0.912 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.223 -18.813 -6.011 24.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.171 4.171 3 C 0.036 3.964 4 C -0.171 4.171 5 C -0.210 4.210 6 N -0.330 5.330 7 C 0.408 3.592 8 O -0.463 6.463 9 N -0.398 5.398 10 C 0.011 3.989 11 C -0.158 4.158 12 C -0.013 4.013 13 C -0.561 4.561 14 H 0.073 0.927 15 C -0.144 4.144 16 N -0.533 5.533 17 Si 0.721 3.279 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.014 4.014 22 C -0.230 4.230 23 C -0.227 4.227 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.105 0.895 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.227 0.773 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.071 0.929 43 H 0.141 0.859 44 H 0.157 0.843 45 H 0.101 0.899 46 H 0.107 0.893 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 13.799 -18.260 -6.777 23.870 hybrid contribution -0.128 0.038 1.401 1.407 sum 13.671 -18.222 -5.377 23.406 Atomic orbital electron populations 1.21736 0.95209 1.01628 1.02355 1.21912 0.96834 0.95832 1.02487 1.21239 0.95078 0.93732 0.86324 1.21903 0.94555 0.98213 1.02423 1.21743 1.00673 0.96114 1.02438 1.46517 1.47304 1.33363 1.05866 1.15955 0.79117 0.79607 0.84512 1.90754 1.60391 1.64337 1.30782 1.45672 1.55708 1.31853 1.06582 1.21493 0.93449 0.84586 0.99333 1.21881 1.00670 1.00937 0.92300 1.19013 0.94245 0.90762 0.97246 1.21166 1.31419 1.11222 0.92322 0.92740 1.25021 0.95894 0.96374 0.97101 1.69953 1.34727 1.17453 1.31130 0.86651 0.78304 0.77852 0.85139 1.20253 1.21267 1.20258 1.21276 0.98037 1.02808 0.79297 1.23867 1.02075 0.99050 0.97963 1.23236 0.98473 0.99264 1.01762 0.92741 0.92694 0.92402 0.91366 0.90982 0.89533 0.90831 0.91436 0.92285 0.92576 0.92739 0.77271 0.92083 0.91942 0.92867 0.92883 0.96275 0.96271 0.92872 0.85890 0.84294 0.89863 0.89347 0.88546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.80 37.16 0.36 -1.06 16 2 C -0.13 -1.03 5.42 -26.73 -0.14 -1.17 16 3 C 0.14 1.24 2.03 -67.93 -0.14 1.10 16 4 C -0.13 -0.98 5.30 -26.73 -0.14 -1.12 16 5 C -0.15 -1.35 9.80 37.16 0.36 -0.98 16 6 N -0.60 -6.82 1.63 -164.23 -0.27 -7.09 16 7 C 0.71 10.77 8.00 -86.92 -0.70 10.07 16 8 O -0.58 -10.86 12.09 5.29 0.06 -10.79 16 9 N -0.74 -11.01 5.46 -65.23 -0.36 -11.37 16 10 C 0.13 2.41 5.68 -4.05 -0.02 2.39 16 11 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 12 C 0.02 0.64 4.97 -27.89 -0.14 0.50 16 13 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 14 H 0.05 1.46 7.74 -52.48 -0.41 1.06 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -26.88 13.29 55.43 0.74 -26.15 16 17 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 21 C 0.09 0.97 5.54 -67.93 -0.38 0.59 16 22 C -0.19 -2.35 9.63 -26.73 -0.26 -2.60 16 23 C -0.19 -2.15 9.87 -26.73 -0.26 -2.42 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.67 7.69 -51.93 -0.40 0.27 16 27 H 0.07 0.52 7.65 -51.93 -0.40 0.12 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.09 0.79 5.46 -51.93 -0.28 0.51 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.47 6.52 -51.93 -0.34 0.13 16 32 H 0.06 0.64 7.75 -51.92 -0.40 0.24 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.39 4.93 5.86 -40.82 -0.24 4.69 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 43 H 0.12 1.01 6.64 -51.93 -0.34 0.67 16 44 H 0.14 2.20 5.22 -52.10 -0.27 1.93 16 45 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 46 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 47 H 0.10 1.35 7.58 -51.93 -0.39 0.96 16 LS Contribution 369.63 15.07 5.57 5.57 Total: -1.00 -31.21 369.63 -9.81 -41.02 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -8.53 Total: 2.93 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -2.00 Total: -10.59 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: 0.11 Total: -44.61 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.06 Total: -10.79 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.21 -9.81 -41.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531393598.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.140 kcal (2) G-P(sol) polarization free energy of solvation -31.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds