Wall clock time and date at job start Tue Mar 31 2020 05:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46992 * 2 1 4 4 C 1.53000 * 109.46992 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47273 * 179.97438 * 4 3 2 6 6 N 1.46499 * 109.47555 * 179.97438 * 5 4 3 7 7 C 1.34777 * 120.00199 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99750 * 359.97438 * 7 6 5 9 9 C 1.50702 * 119.99928 * 180.27479 * 7 6 5 10 10 N 1.46902 * 109.47027 * 179.72353 * 9 7 6 11 11 C 1.46848 * 110.99759 * 294.20938 * 10 9 7 12 12 C 1.53031 * 109.52183 * 174.16278 * 11 10 9 13 13 C 1.53125 * 109.28019 * 59.17805 * 12 11 10 14 14 C 1.50700 * 109.57267 * 182.40843 * 13 12 11 15 15 H 1.07998 * 119.99727 * 119.71375 * 14 13 12 16 16 C 1.37871 * 120.00453 * 299.71254 * 14 13 12 17 17 N 1.31520 * 119.99633 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00247 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47096 * 59.99933 * 18 16 14 20 20 H 1.48506 * 109.47305 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47284 * 300.00017 * 18 16 14 22 22 C 1.53118 * 109.15784 * 302.34549 * 13 12 11 23 23 C 1.46843 * 110.99818 * 169.99758 * 10 9 7 24 24 H 1.09005 * 109.46653 * 60.00592 * 1 2 3 25 25 H 1.09001 * 109.47222 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47307 * 300.00526 * 1 2 3 27 27 H 1.08998 * 109.47307 * 239.99474 * 2 1 3 28 28 H 1.08997 * 109.47276 * 119.99454 * 2 1 3 29 29 H 1.08992 * 109.47264 * 59.99968 * 3 2 1 30 30 H 1.08997 * 109.47093 * 299.99507 * 3 2 1 31 31 H 1.08998 * 109.47307 * 59.99474 * 4 3 2 32 32 H 1.09011 * 109.46819 * 299.99831 * 4 3 2 33 33 H 1.08998 * 109.47382 * 59.99521 * 5 4 3 34 34 H 1.09002 * 109.47216 * 299.99958 * 5 4 3 35 35 H 0.97000 * 119.99484 * 359.97438 * 6 5 4 36 36 H 1.09004 * 109.46965 * 299.72211 * 9 7 6 37 37 H 1.08994 * 109.46990 * 59.72065 * 9 7 6 38 38 H 1.09003 * 109.45649 * 294.17520 * 11 10 9 39 39 H 1.08995 * 109.46466 * 54.14585 * 11 10 9 40 40 H 1.09001 * 109.50516 * 299.23843 * 12 11 10 41 41 H 1.09000 * 109.50603 * 179.12077 * 12 11 10 42 42 H 1.08994 * 109.51952 * 62.24835 * 13 12 11 43 43 H 0.97001 * 119.99715 * 179.97438 * 17 16 14 44 44 H 1.09001 * 109.50142 * 297.71135 * 22 13 12 45 45 H 1.08995 * 109.50409 * 177.59757 * 22 13 12 46 46 H 1.08996 * 109.46300 * 305.85393 * 23 10 9 47 47 H 1.09004 * 109.46280 * 65.83399 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 7 5.5450 2.8851 0.0012 7 6 6.2189 4.0523 0.0015 8 8 5.6124 5.1026 0.0002 9 6 7.7259 4.0523 -0.0035 10 7 8.2155 5.4373 -0.0089 11 6 7.8567 6.1174 -1.2600 12 6 8.2526 7.5930 -1.1717 13 6 9.7604 7.6980 -0.9260 14 6 10.1482 9.1469 -0.7790 15 1 10.6020 9.4940 0.1375 16 6 9.9237 10.0291 -1.8144 17 7 9.3706 9.6064 -2.9302 18 14 10.4050 11.8248 -1.6323 19 1 11.8664 11.9232 -1.3877 20 1 10.0616 12.5580 -2.8773 21 1 9.6703 12.4207 -0.4876 22 6 10.1145 6.9408 0.3569 23 6 9.6645 5.4841 0.2243 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5137 0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.9285 -0.8890 32 1 3.9329 0.9288 0.8910 33 1 3.7163 3.3994 0.8894 34 1 3.7171 3.3983 -0.8905 35 1 6.0300 2.0450 0.0026 36 1 8.0921 3.5409 0.8867 37 1 8.0862 3.5360 -0.8932 38 1 8.3832 5.6492 -2.0917 39 1 6.7815 6.0389 -1.4206 40 1 7.7161 8.0651 -0.3487 41 1 8.0004 8.0940 -2.1063 42 1 10.2978 7.2606 -1.7673 43 1 9.2123 10.2272 -3.6586 44 1 9.6071 7.4027 1.2039 45 1 11.1924 6.9758 0.5144 46 1 9.9023 4.9456 1.1416 47 1 10.1826 5.0191 -0.6145 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541954366.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:15 Heat of formation + Delta-G solvation = -84.411235 kcal Electronic energy + Delta-G solvation = -22188.822070 eV Core-core repulsion = 18983.327609 eV Total energy + Delta-G solvation = -3205.494461 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.98054 -39.29856 -37.37858 -35.66246 -35.30188 -33.31856 -31.88437 -31.41653 -29.19612 -27.24395 -25.91193 -23.77109 -23.36456 -22.67080 -22.09565 -21.15041 -20.36039 -18.43381 -17.89270 -17.26015 -17.03091 -16.62309 -16.30697 -15.99719 -15.51859 -15.26370 -14.93776 -14.60279 -14.50760 -14.30844 -14.12323 -13.91061 -13.77333 -13.33614 -13.06075 -12.81344 -12.80426 -12.58695 -12.53297 -12.37746 -12.03263 -11.98204 -11.93898 -11.85437 -11.68116 -11.38958 -11.34691 -10.95622 -10.79757 -10.49235 -10.34687 -10.03803 -9.14848 -8.07169 -6.20733 1.40140 1.42860 1.49998 1.70738 2.14017 2.44063 3.12674 3.19530 3.82888 3.88516 4.00234 4.17264 4.18296 4.29670 4.31597 4.32950 4.42011 4.44587 4.52842 4.60922 4.62766 4.71346 4.79810 4.85608 4.92587 4.95658 5.02426 5.03527 5.11156 5.11956 5.20115 5.24218 5.31221 5.34057 5.44250 5.50557 5.52805 5.59789 5.62644 5.99070 6.01364 6.21870 6.31863 6.41519 6.67208 6.91229 7.37733 7.46620 8.97387 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034315 B = 0.002594 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.778811 B =10792.057123 C =11344.301515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.121 4.121 3 C -0.119 4.119 4 C -0.117 4.117 5 C 0.119 3.881 6 N -0.719 5.719 7 C 0.507 3.493 8 O -0.570 6.570 9 C 0.037 3.963 10 N -0.538 5.538 11 C 0.071 3.929 12 C -0.091 4.091 13 C 0.044 3.956 14 C -0.534 4.534 15 H 0.052 0.948 16 C 0.008 3.992 17 N -0.919 5.919 18 Si 0.956 3.044 19 H -0.268 1.268 20 H -0.284 1.284 21 H -0.274 1.274 22 C -0.101 4.101 23 C 0.068 3.932 24 H 0.051 0.949 25 H 0.059 0.941 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.051 0.949 34 H 0.047 0.953 35 H 0.417 0.583 36 H 0.136 0.864 37 H 0.080 0.920 38 H 0.015 0.985 39 H 0.064 0.936 40 H 0.018 0.982 41 H 0.056 0.944 42 H -0.008 1.008 43 H 0.259 0.741 44 H 0.046 0.954 45 H 0.061 0.939 46 H 0.099 0.901 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.870 -23.672 6.242 26.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.159 4.159 3 C -0.157 4.157 4 C -0.155 4.155 5 C -0.005 4.005 6 N -0.374 5.374 7 C 0.293 3.707 8 O -0.448 6.448 9 C -0.094 4.094 10 N -0.263 5.263 11 C -0.057 4.057 12 C -0.129 4.129 13 C 0.025 3.975 14 C -0.572 4.572 15 H 0.070 0.930 16 C -0.191 4.191 17 N -0.559 5.559 18 Si 0.781 3.219 19 H -0.193 1.193 20 H -0.210 1.210 21 H -0.200 1.200 22 C -0.139 4.139 23 C -0.059 4.059 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.254 0.746 36 H 0.154 0.846 37 H 0.098 0.902 38 H 0.033 0.967 39 H 0.083 0.917 40 H 0.037 0.963 41 H 0.074 0.926 42 H 0.011 0.989 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.080 0.920 46 H 0.118 0.882 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -11.587 -22.614 6.451 26.216 hybrid contribution 0.604 0.726 -0.968 1.352 sum -10.984 -21.888 5.482 25.095 Atomic orbital electron populations 1.21803 0.95903 1.01929 1.01740 1.21502 0.95902 0.95968 1.02517 1.21540 0.94260 0.97703 1.02230 1.21724 0.96253 0.93617 1.03898 1.21355 0.79432 0.98794 1.00933 1.45855 1.07422 1.08488 1.75592 1.21043 0.90870 0.83583 0.75171 1.90708 1.71044 1.33212 1.49802 1.22079 0.91042 0.91071 1.05210 1.61576 1.14643 1.14162 1.35933 1.22042 0.99527 0.95359 0.88725 1.21359 0.98276 0.93284 1.00005 1.18677 0.92128 0.93964 0.92724 1.21584 1.39843 0.95394 1.00355 0.92958 1.25809 0.95218 1.02953 0.95074 1.70031 1.44356 1.36134 1.05383 0.85652 0.78939 0.80021 0.77278 1.19273 1.20964 1.19954 1.21552 0.99415 0.94598 0.98349 1.22114 0.85714 0.97133 1.00973 0.93008 0.92190 0.92857 0.91582 0.91389 0.92014 0.92261 0.90198 0.89855 0.93028 0.93453 0.74558 0.84643 0.90217 0.96655 0.91735 0.96299 0.92555 0.98940 0.93161 0.93564 0.92039 0.88232 0.94969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 9.91 71.98 0.71 -0.80 16 2 C -0.12 -1.13 5.93 30.60 0.18 -0.95 16 3 C -0.12 -1.36 5.21 30.60 0.16 -1.20 16 4 C -0.12 -1.27 5.33 30.59 0.16 -1.11 16 5 C 0.12 2.21 5.67 86.38 0.49 2.70 16 6 N -0.72 -13.55 5.56 -463.06 -2.57 -16.12 16 7 C 0.51 14.52 7.50 87.66 0.66 15.18 16 8 O -0.57 -23.04 14.33 -3.04 -0.04 -23.09 16 9 C 0.04 0.93 5.45 85.56 0.47 1.39 16 10 N -0.54 -19.70 4.40 -900.94 -3.96 -23.66 16 11 C 0.07 3.14 5.11 86.32 0.44 3.58 16 12 C -0.09 -4.85 5.12 30.65 0.16 -4.70 16 13 C 0.04 2.33 2.16 -11.46 -0.02 2.30 16 14 C -0.53 -31.13 8.56 25.60 0.22 -30.91 16 15 H 0.05 2.98 7.74 -2.91 -0.02 2.95 16 16 C 0.01 0.44 5.31 84.65 0.45 0.89 16 17 N -0.92 -55.99 11.37 21.45 0.24 -55.74 16 18 Si 0.96 45.77 29.54 68.60 2.03 47.80 16 19 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 20 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 21 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 22 C -0.10 -4.35 5.32 30.65 0.16 -4.19 16 23 C 0.07 2.30 5.46 86.33 0.47 2.77 16 24 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 25 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.42 4.47 8.47 -92.71 -0.79 3.68 16 36 H 0.14 2.40 7.99 -2.38 -0.02 2.38 16 37 H 0.08 1.70 8.12 -2.39 -0.02 1.68 16 38 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.06 2.97 5.78 -2.39 -0.01 2.96 16 40 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.06 3.36 6.17 -2.39 -0.01 3.34 16 42 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 43 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 44 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 46 H 0.10 2.61 8.01 -2.39 -0.02 2.59 16 47 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 Total: -1.00 -74.52 367.58 0.53 -74.00 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: 0.13 Total: 11.85 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: 4.71 Total: -15.03 kcal Atomic # 7 Polarization: -89.23 SS G_CDS: -6.29 Total: -95.52 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.04 Total: -23.09 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -74.52 0.53 -74.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541954366.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.416 kcal (2) G-P(sol) polarization free energy of solvation -74.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds